LOC110496545 (LOC106588816)


Basic Information

Item Value
gene id LOC110496545
gene name LOC106588816
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54412770 ~ 54510923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953282.1
GACAGAAAAATGTGCGTAGCCCAGTGGAGGCGTGTGCTGGGTCGACCAATGGGAGCTCGAGTCAACCGCGAGACCGCACATGTTTACAGGCAGCAATCCGCCGGTAGAGGCGCTGGCTCTTGGCAGTCGGCTACGGACTGGATTATCTAGAATATGGATCCGGAGTTACTGTACGCGGCTATTTCAGCAAATTTCACCCTGTCAGACGGCAAACCGGTGTAAAATATGTGTGTGAAACTTAAATAATTTTTCATGTAGATCACAATTAATATCTTTGTTTGTGTATTGGCGAAGCCCTTTTGTTCGGATGAAAATGTACTGTACAAATGTCATTGTCGGTCCTTAAATACATTTCCGTGTTTTTGTGCTCTCTTACGAGTTTAGAGGGAACAGTCAGGAAAACAAACAGGTCGAACGAAGAAATATCAGTAACCGGTCTGTTGAAGAGGTTATTTCACGGGGAATGGCTTGTTTTCATGCATTTGTTAATCCATGCATGTAGCTTTTTCTACACATATTCGTGCTTTTGAATATCGTTCGTTTTGACCCGTGCTAGCAGCAGAGTATGTTGCCGCTTTCTAACATTGGGTTAGGGTTTATGGAGCACGTAGTCTATCCGCTGCGGTGTTGTGTTTTTCATGTCAGTGTTTATCAATTCTAACTCGACGTCCATAGATATACATTGACCGCATTCCGCTTTAATTTCGGTGCTATAAATTGATCGCTATGCATACGAGGCGGTTGGTGAAGCGTTCAATCCTGGGGAGCCGGGTGTATGCGCCGAGTCCGACTGGGGACGGGGCTCCGTTGACAGGACTGGTACAGGCTGTCAAGCAGGAAAACAGAGACGTTTCAACCGGACCTCGGCGTAACGTCTACACGGTACTAATGCAAGACGGAAGCCTGAAAGAATTCTCCGAGGACGAGATAGCCGTGGGCTTCAACCAAACGACGGCGAAAGGACCGCTCAAATCCAGCTTGaagcagagctccAGTAACGGCCGGGGGGACGGGACTCCACACCAGGGCCAGAACGGGGAGGCCAACTCCCTGAGCCCAGATGCGGTGGAGGGGGAGCGGGCAGTGGATGGCAGGAGGACAGGGCGCACCTTGGAGGGTCCTGAGAGGGACCACACCCGCTCTGTCTCCCTGCTGGACCAGAAACGTAAAGTGGTGTCATCCAGCATCGATGTGCCCCATGCCAGgaagtcagaggaggaagtggacatGGACAAGGTGACAGCAGCCATGGTTCTGACCAGCCTGTCCAGCAGTCCACTGGTCAGGAGCCCCCCAGTCAAAGTCAGCGagggtCTGAATGGCTCGTGGAAGGAGAGTGGTGGGGGCTTCACACCCTCCAGTTACAGCAGTAGTGGCTATTGGAGCTGGAGTGGCCCTAGTGACCAGTCCAACCCGTCCACCCCCTCCCCACCGCTATCTGCAGACAGCTTCAAGCCATTCCGCATGTCCAGCGTCAACGGCCCGCCCCCCGACGACGCCATCGACGAACAGGATGGCAGCAGCCTGCTCTTCGACGAGCCAATCCCACGGAAGCGCAAGAACTCCATGAAGGTGATGTTTAAGTGTCTGTGGAAAAACTGTGGGAAGGTTCTGAGCACGGCTGCTGGGATACAGAGACACATCCGGACCGTTCACCTGGGGCGTAACTGTGACTCTGACTGCAGTGATGGAGAGGAGGATTTCTACTACTCGGAGATCAAACTCAACACAGACTCAGTCGCTGACAGTCTGAGCAGCCTGTCCCCCGTCTCCCCCTCCGtactctcccccatctctcccccccatGACCACCACAGACGACCCCCTGCAGAGGGCAGCAACGGGACCAATGGGAACAAGGATAATCACAGCCACACCCACTCCAACAGTACGCCCCTCAGTCGCTCTGCCCCCAGCGCCCTCTACCTCATCCACGCAGAGCACGCTTACCAGGCCACAGCTCCAGTCACCATCCCCTTCTCTGGCTCTGCTGCCTCAGGCTCTGCTGCCTCAGGCTCTGTTGCCTCAGGCTCTGTTGCCTCAGGCTCTGCTGCCCCAGGCTCTGCTGCCTCCACCTCCTTCACCCCCAGCAGCAGCTCGACCTTCAGTATCTCCTGGCAGTCACCTCCTGTCACCTTCACTGGCACTGCTgcatCTCCCACCCACAGTCGGACACAGAGCTTTGGGGAGCAGCGGTCCCAGACAATAgcagtcctctcctcccctcccagagCCACTGGCTCACTCAGCCGTAAGTCCCGTGGCGAGGGTAAGAAGTGTCGTAAAGTGTACGGAATGGAGAACAGGGACATGTGGTGCACTGCCTGCCGATGGAAGAAAGCCTGCCAGAGATTTACCGACTGAACCAACCAAGTAACCGACCAACCGTGAGGGTTCCCCGTGGGAACCAGGGGTGTTCCTTTCTGTTCCCGTCCTACGCAAGCGTTGTCACTCCAAAACCAACGTTGTCACACCCTTCTACAGTCCTGGTCCACTCCACCCCAACCATAACCCGACCCCTCCTGACCCACCCCAGCAGGACCAAGGGGGTGGAGCCTCCTACTGTTCTGAGTATATCCCAAGCTAACTCCAGCTCTCTCCCAAGACTTCCAACCGGGGAACAAAAATAACCTCGGACCTAATTGTCAGGTCAGCCATTAAGGGACCAGAAAAGAAGCACATTTTGTCCCAGAACGTctcagtattttttttaaaattgagaaTGGGCTTTTTTTTTGCTTTGAGAGAAGGTCATAATAAAAAGATAATGGGGAAAAT
>TU1787303
CCCAGCAGCAGCTCGACCTTCAGTATCTCCTGGCAGTCACCTCCTGTCACCTTCACTGGCACTGCTgcatCTCCCACCCACAGTCGGACACAGAGCTTTGGGGAGCAGCGGTCCCAGACAATAgcagtcctctcctcccctcccagagCCACTGGCTCACTCAGCCGTAAGTCCCGTGGCGAGGGTAAGAAGTGTCGTAAAGTGTACGGAATGGAGAACAGGGACATGTGGTGCACTGCCTGCCGATGGAAGAAAGCCTGCCAGAGATTTACCGACTGAACCAACCAAGTAACCGACCAACCGTGAGGGTTCCCCGTGGGAACCAGGGGTGTTCCTTTCTGTTCCCGTCCTACGCAAGCGTTGTCACTCCAAAACCAACGTTGTCACACCCTTCTACAGTCCTGGTCCACTCCACCCCAACCATAACCCGACCCCTCCTGACCCACCCCAGCAGGACCAAGGGGGTGGAGCCTCCTACTGTTCTGAGTATATCCCAAGCTAACTCCAGCTCTCTCC

Function

NR:

description
zinc finger protein 704-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953282.1 False 2778 mRNA 0.54 9 54412770 54510923
TU1787303 True 516 TUCP 0.58 3 54509758 54510746

Neighbor

gene id symbol gene type direction distance location
LOC110496546 LOC106588814 coding upstream 2849 54322817 ~ 54409921 (+)
LOC118940998 NA coding upstream 154387 54254893 ~ 54258383 (+)
gmpr gmpr coding upstream 376056 54022282 ~ 54036714 (+)
LOC110496857 LOC106588809 coding upstream 404732 53983637 ~ 54008038 (+)
dync1li1 LOC106588808 coding upstream 484589 53916292 ~ 53928304 (+)
LOC110496548 LOC106588817 coding downstream 43455 54554378 ~ 54576444 (+)
LOC110496549 LOC106588818 coding downstream 120462 54631385 ~ 54635257 (+)
LOC110496550 LOC106588820 coding downstream 146483 54657406 ~ 54687881 (+)
LOC110496551 fam65b coding downstream 227330 54738253 ~ 54817359 (+)
armh2 cssa27h6orf229 coding downstream 312737 54823660 ~ 54827619 (+)
G1562140 NA non-coding upstream 72965 54339237 ~ 54339805 (+)
G1562121 LOC106588813 non-coding upstream 97430 54314229 ~ 54315340 (+)
G1562086 NA non-coding upstream 151673 54260873 ~ 54261097 (+)
G1562066 NA non-coding upstream 188890 54222678 ~ 54223880 (+)
G1562039 NA non-coding upstream 225913 54185916 ~ 54186857 (+)
G1562195 NA non-coding downstream 15121 54526044 ~ 54528153 (+)
G1562197 NA non-coding downstream 18705 54529628 ~ 54552380 (+)
G1562239 NA non-coding downstream 22471 54533394 ~ 54534406 (+)
G1562259 NA non-coding downstream 86474 54597397 ~ 54716118 (+)
G1562262 NA non-coding downstream 128995 54639918 ~ 54653110 (+)
G1561856 NA other upstream 535840 53872173 ~ 53876930 (+)
G1561845 NA other upstream 571899 53817164 ~ 53840871 (+)
LOC110514975 LOC106588804 other upstream 688106 53713836 ~ 53730416 (+)
G1561544 LOC106588750 other upstream 1124305 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 1233833 53175661 ~ 53178938 (+)
G1563547 NA other downstream 627725 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1397327 55908085 ~ 55908934 (+)
LOC110496862 LOC106588838 other downstream 1518015 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other downstream 1539665 56050588 ~ 56051793 (+)
G1565672 NA other downstream 2520698 57031621 ~ 57031963 (+)

Expression


Co-expression Network