LOC110496860 (LOC106588819)


Basic Information

Item Value
gene id LOC110496860
gene name LOC106588819
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54636849 ~ 54652932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572874.2
TAGCCAATCTGCTTGAGCACGTATAGACGCTTGTAATTCACCAGCCCCCTTGCTGTCTCGCGCAGTGCTCTCTTTCCCCACACAGCAGTGTTCTTGCTGACTCAGTGCCTTGCTCGCTTTTTTCGCCAAGCACCGATCAGTAACTGCGACGCACGCTCCCTCCAGTAGCCTATAGCCCACTTCAGCAGCACCAACGCCGCACAAACCGACAGACATGGCTAAAACAGCAATTGCATACAAAGAGAAGATGAAGGAGATTTCTGTCctatctctcctctgctcctgccTGTACCCTGAGGCACGCAAGAACCTGATGGGAGAGTTCCAAGTAGCAGGCATGGAGGTGAAGCCCATCAACAAGCGTGCCTCTGGCCAGGCCTTCGAGGTGATCCTGAAGCCCCCCTCCCCGATGTCGGACGCAGCCCACTGTGTCACCTCGCCCCCTAAGAGGGAGGTCTCTCTGGAGGACATCCAGAAGAAGCTGGAGGCCGCTGAGGACCGGAGGAGATCCCAGGAGGCCCAGGTTCTCAGGGCCCTTTCAGAGAAGCGGGAGCACGAAAGGGACGTGCTGCTCAAGGCCATGGAGGAGAACAGCAACTTCAGCAAGATGGCAGAGGAGAAGCTTACCATGAAGATGGAGCAGATCAAGGAGAACCGCCAGGCCTACCTAGCCTCCATCATGGAGCGCCTGCAGGAGAAGGAGAGGCATGCCCAGGTGGTGCGCAGGAACAAAGAGCTGAGGGAAGAGCTGACAGCGTGAGCAGATGAGGGGCGCCACCGACCATCATACCCCCCTACAGCCACCCTTCCCCccgacagccccccccccccccccccccccagatcccCCTACTACTACAGCCCCCACAGCATCAGacaaccccccccctcccttgagGGAGGAGGATGACCAACCCACCCACCGCCAGCCCACACCAACAGCGTTAGCAAATGGGGGGATCACAAACAAATATGAAAATGTCTCCCACTCCTCCCTATAAAAGAATGTGTTTGCTCAATTTCAAATgatgaaaaagaaagaaaagagaagcCAACCAAGTGAAAGTGGGTATTGTTTTTTGTAAATACTTCCTTTtttgttatatacagtatgataaTACAGCTAAAGTATTGCAGTTTGCGATTGGATCATTTTCTCTATCTATGGATGTACTTTGTTGTGTAGTTTTTCTCAGAACAAAAAACGTTTGCAGTTTCTCTTGTACTATCAGGCTTCTGTGATGTTGTGAGTTTGCCAGCTAGCTGACGTGTGTTTGCGGTGGTTATTttctgaccatgtctgtgtctgtgtctgtgtctgtgtcggtcagtcagtcagtatgggGATGATTAGAATGCAAGCTGCACATTGACTCCTGGAAGAGAGACTAGCTAGACTTCAGGAGACTTATTATAGCATTTATGAGCCGattttctcctgtctgtctgtctgatcccCCACTCTCTTACATACAGttgtacattcacacacacacatgcacgctcacacacacacatactctcaaacacacttacacacacacacacacattttgagaAATTTGGCAAACATGACACGTCGCTCAAGAGGAGCTTGCTAAATTCTGTCAGTTGGGCATTGCAGAGGTCACATGACATCCCTGGCTCATACCATGATGTCACAGAGGGGTGTTATGATCCTTCCTGGTTCCCAAGACCCCCTGCGTCCCCTGTCAATCACTCTCTCAGCATGTATGTACCATCTTAGACATGTAGATAATGTAATCGTGCCTAGAATGCTACAAACTCATATAGCGGCTAACATAGAGGCAATGGTAGATCCATAAGTTACATCCATGTCCTGCAAGCTTATGTGCCCTCTCATTTCTTTCACGTCGTACCAGAGAGGAACCAATGCCAAATGCTACTAGGAAGGTTTCACACTATATATGGAGAATCGTAGAATAACTCTCGCACTATGGAGAATGAATCATTGTACCTTCTTCTTAGTATTTAAACAGCTTTTAACTGGGTACAGCAGACAATGGCATACGAAGGGCATAAACAGCTAAAGTGGGCAACATGTAAGCCAATCAACACATAGACTTCAAATAACAGTTAGATGATGTTAGATGTGTTAACATGACAAAGGAAGACAGTGGCCATCTGCAAAGGGTGCATGCAAGTGTATacaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaggagggGTGGGtggattgtgtgtgcgtgtgtgatgggGAGCACAGGGAGCACAGCCAGGAGGTTGGAGCTGTATATCTGACCATCGGTCACATACTGATGACATCACAGCGTCCTGTCCATGGTGATGaatctgcctgcctctctctcttcctgtttgtgTTTCCCCCCTCCGCATATATCTTTGTGAGCAACCTGTGGTTAATAAAGGTTTGGGGTTCTGTGAATGa
>TU1788544
CAGCAGTGTTCTTGCTGACTCAGTGCCTTGCTCGCTTTTTTCGCCAAGCACCGATCAGTAACTGCGACGCACGCTCCCTCCAGTAGCCTATAGCCCACTTCAGCAGCACCAACGCCGCACAAACCGACAGACATGGCTAAAACAGCAATTGCATACAAAGAGAAGATGAAGGAGATTTCTGTCctatctctcctctgctcctgccTGTACCCTGAGGCACGCAAGAACCTGATGGGAGAGTTCCAAGTAGCAGGCATGGAGGTGAAGCCCATCAACAAGCGTGCCTCTGGCCAGGCCTTCGAGGTGATCCTGAAGCCCCCCTCCCCGATGTCGGACGCAGCCCACTGTGTCACCTCGCCCCCTAAGAGGGAGGTCTCTCTGGAGGACATCCAGAAGAAGCTGGAGGCCGCTGAGGACCGGAGGAGATCCCAGGAGGCCCAGGTTCTCAGGGCCCTTTCAGAGAAGCGGGAGCACGAAAGGGACGTGCTGCTCAAGGCCATGGAGGAGAACAGCAACTTCAGCAAGATGGCAGAGGAGAAGCTTACCATGAAGATGGAGCAGATCAAGGAGAACCGCCAGGCCTACCTAGCCTCCATCATGGAGCGCCTGCAGGAGAAGG

Function

NR:

description
PREDICTED: stathmin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572874.2 False 2445 mRNA 0.49 5 54636849 54652932
TU1788544 True 619 TUCP 0.57 4 54638867 54652850

Neighbor

gene id symbol gene type direction distance location
tpd52 tpd52 coding downstream 84532 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 319225 54316124 ~ 54317624 (-)
LOC110496544 LOC106588813 coding downstream 321204 54314224 ~ 54315645 (-)
LOC110496543 LOC106588812 coding downstream 350272 54280544 ~ 54286577 (-)
atxn1a LOC106588811 coding downstream 392694 54048864 ~ 54244155 (-)
LOC110496552 gmnn coding upstream 174785 54827717 ~ 54839922 (-)
LOC118941190 LOC106588825 coding upstream 189502 54842434 ~ 54853844 (-)
LOC110496559 LOC106570512 coding upstream 2051920 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 2075409 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2405605 57058537 ~ 57061029 (-)
G1563234 NA non-coding downstream 27149 54606755 ~ 54609700 (-)
G1563217 NA non-coding downstream 69239 54557544 ~ 54567610 (-)
G1563100 NA non-coding downstream 265542 54369121 ~ 54371307 (-)
G1563002 NA non-coding downstream 401407 54235048 ~ 54235442 (-)
G1563255 NA non-coding upstream 12797 54665729 ~ 54666665 (-)
G1563266 NA non-coding upstream 31081 54684013 ~ 54687483 (-)
G1563284 NA non-coding upstream 67283 54720215 ~ 54720509 (-)
G1563272 NA non-coding upstream 161929 54814861 ~ 54817329 (-)
G1563328 NA non-coding upstream 219854 54872786 ~ 54873168 (-)
mrpl3 mrpl3 other downstream 741900 53887137 ~ 53895002 (-)
G1562828 NA other downstream 761257 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 884166 53752406 ~ 53752683 (-)
tomm7 NA other downstream 1008427 53621900 ~ 53628443 (-)
G1562762 NA other downstream 1034155 53598650 ~ 53602694 (-)
G1563253 NA other upstream 7694 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 1828536 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3374579 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3422691 58074209 ~ 58078146 (-)

Expression


Co-expression Network