LOC110496552 (gmnn)


Basic Information

Item Value
gene id LOC110496552
gene name gmnn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54827717 ~ 54839922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572521.2
ATCCAGAAGTAGCATCACGTCACGTGATTAAGAGGACATTTAAGCTCCTGGCGCGAGTTGGCGAGAAAGGAAAGTGACTTCCGATAAATAAAGAAGtaaaccaatctgattccactccCGGGAAGCTGCCAAAACTGTCTTGTCAAAATGTCCATTAGGAAAATTAAACCTGGGAATAAAGCCTCTGCGAACATAAAGAGCTTTTTTGGTGGGTCCATTCAAGACATGGGACCTACAAGGAAAACTCTGCAAGTCCTCCAGCAAGCTGCAGTCAATAAGAACCTTGGCAGAGGAATGCTGACAGGAAAGGTGGTTCCCAAAAGAAAACAGTGGAATCCGGAACAAGGGAAGGGCTCAAAGAGGATGAAGGCTGAAGTTGCCGTCAAATCTATAAACACAGAAAATGATGATCTACCTGATGGTGTTACCAAGGAGGCCTATGAACTAATGGTCAAAGaaacccctccctcctcttacTGGAAGGAGGTAGCTGAGGAGAGACGAAAAGCGCTTTACAGCGTTCTCCAGGAGAATGAGAAATTGCACAAAGACATTGATGCCAAGGATGAGCAGATAGCCCAGCTGAAGACTGAGAATGATGAGCTTCAGGAGCTGGCCCAGCACATACATCACATGGCTGACATGATAGAGAGGTTGACTGGAAAGAGTCCGGAAAGTCTGGATGACTTGAGAGAGATCACCCTTGGTACCGAAGATGAGTTGAAAGCGCTAGATGAATCTGATGACCAATGTACCAGCAGTGATTTCACACCCAGGGCTGATGTCTTGGATGATGTCACAGAACAACAGGAAGATGAACCCTCAGAGGATGATTGAGTGACAGAACTCCAGTATACTGGTGAAACTCAACTTTGGGAGATTTCTGGACTATGTTATGGACTTGCCATTCTGTAGTTATATATTTTCTCTGCTTACATCTAAAGAGATACTTGTGCCTTATTTGCATAAGATTTTTACTTTGATAAACCACAACAGTTTACCACCTGATTTATGAAAATGGAAGTTTCCCTTTTATCTTTGCTGTTTAAATCTATTTGTGTTAACCTATGTTTGAGAAATGTTCATTATAGTGCTGTTTTAATGCGCTCTGTACATATGCTTCTGGACTTCTGtgaaataaactttttttttttaaactaa

Function

symbol description
gmnn Acts upstream of or within Kupffer's vesicle development; cilium assembly; and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in several structures, including Kupffer's vesicle; immature eye; mesoderm; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 6. Orthologous to human GMNN (geminin DNA replication inhibitor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006275 regulation of DNA replication biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K10749 GMNN; geminin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572521.2 True 1161 mRNA 0.42 7 54827717 54839922

Neighbor

gene id symbol gene type direction distance location
LOC110496860 LOC106588819 coding downstream 174785 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 275400 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 510093 54316124 ~ 54317624 (-)
LOC110496544 LOC106588813 coding downstream 512072 54314224 ~ 54315645 (-)
LOC110496543 LOC106588812 coding downstream 541140 54280544 ~ 54286577 (-)
LOC118941190 LOC106588825 coding upstream 2512 54842434 ~ 54853844 (-)
LOC110496559 LOC106570512 coding upstream 1864930 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1888419 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2218615 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 2227918 57067840 ~ 57070602 (-)
G1563272 NA non-coding downstream 10388 54814861 ~ 54817329 (-)
G1563284 NA non-coding downstream 107208 54720215 ~ 54720509 (-)
G1563266 NA non-coding downstream 140234 54684013 ~ 54687483 (-)
G1563255 NA non-coding downstream 161052 54665729 ~ 54666665 (-)
G1563234 NA non-coding downstream 218017 54606755 ~ 54609700 (-)
G1563328 NA non-coding upstream 32864 54872786 ~ 54873168 (-)
G1563369 NA non-coding upstream 94768 54934690 ~ 54934917 (-)
G1563370 NA non-coding upstream 95334 54935256 ~ 54935466 (-)
G1563372 NA non-coding upstream 97137 54937059 ~ 54937506 (-)
G1563377 NA non-coding upstream 103223 54943145 ~ 54943722 (-)
G1563253 NA other downstream 162074 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 932768 53887137 ~ 53895002 (-)
G1562828 NA other downstream 952125 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1075034 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1641546 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3187589 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3235701 58074209 ~ 58078146 (-)
G1566972 NA other upstream 3327462 58167384 ~ 58167697 (-)

Expression


Co-expression Network