LOC118941190 (LOC106588825)


Basic Information

Item Value
gene id LOC118941190
gene name LOC106588825
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54842434 ~ 54853844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953300.1
GGAATACATTTTCTGCCTGTGGTGAAAAAATAAGTAGCTAGCAAAACACAAAGAAATCTCGACGTTCATACCTCTCAAAATGTCTAAACTGGCATTGTTCAATGTGTATATAACTGAACGGCTAACAGCGGTGGCTGTGGAGATAGCCGGGGTGGTAGAGAGAACAATAACAGAATACCAGGAAGAAATCTCTCGTTCAAAGGAGGAGAACGAACGTCTTCGACGGCTGCTGGATTTCAAACTGCACAGAACAGACCCCCAGCAGCTCACGCTCCCAGTCTCTGAAGAGGAGGTTCCCCCTGCGCGGCAGCATGGTGAGCAGAAGTGGGGCCCCAATCTGGGGCAGAAGGACCCAGAGTCAACACAGATTAAAGATGAACAAGAGGAAATCGGGACAAATCAGGAGGAAGAGCTTGAAAGGCTAGAATCTGATACCAACGACTCCATATTCACTGtctgtgaggagagagacagtaaccCACCTTATCCGCCCTATCAAATGGATTTCTCAAGCCACACTTTCGAGAGCAAAGAGGATGATGTGTTATGCATCCTCATTCCTAAAGAGATCAAAACTGAGCCTGATGGAGAGGACTACACAGTATCAGAAGCAACCAGTGCCTCTCAGTCCCTATCAGAAGGATATCTAGGCTGTTCTGCAGCTCAGAGTGAAAACAGCGGAAGTGACAACGAGGTGGAGAGTGGGGGACAACCGTCAGGGTCAAAGCCACTGGAATCATCCAGAAAATGGGCAAAGAAAGAACTAAGCTTCCATACCGTTGCTGGGGGCAGGGCGACCACAAATGCTTCTCCTTATTGTTGCAAGTTGTGTGGAAGTACATTTGTGTACATTGGTCCTTTAGTTAACCATGTGAAAAATGTGCACACAAAGCATACGaaaatgtgtggtgtgtgtgaagaAGTCTTTGAGTCCATGGCAAGTCTGACAGATCACCTGCAAACCCACATAAAAGCAACGCGTACTTGTAATGTTTGTGGCAAATGCTTCCCTAGTGATGCTAATCTGAGAACACACATGGTgtctcacacaggagagaaacagtaTCAATGCAAAGAATGTGGGAAATGCTTCAAAACTAAGGGATATATGAAATTGCATATGAGACTGCACACTGGGGAGAAACCATTTCAGTGCAAAGAATGTGGAGAAAGTTTCACTTGTAATGGATACTTGAAAGCACATATGAAgttccacacaggggagaaatcatATCGGTGTAAGGACTGTGGGCAAGACTTTGACCAGAAGACACAACTGGAAACGCATATGTGGACTCACAGAGGTGAGAAACCACATGGTTGCAAGCAGTGTCCCAAAAGCTTCAAGCGCAAGGAAGAACTGACCAGACACACAGcggttcacacaggagagagaccttTCAAGTGCACTGTTTGTGGACATTGCTTTGCCACCCCAGGCAACCTGACACAACACCTGACCACTCACTCCGGAGAGAAACCGTATCGGTGCAAATTCTGTGGCAGATGCTTTAGAAATAATCCGTTACTTAAAAGTCACCTGAGGAACCGGCACAAATTTCATGAAAGTGCCTGATTCTCAGAAGATGATTTAAAGGACAAGTTACgttttttacaaccaaatctcGATTTTTGATGTAAATAGCATGTTCTTGAAGAGTGCAGACACCTTTTTTGTGATTTTGCACAAGTCATTTCCCTTATCCAGCTGTTCCATTTTCTGTGTAgcctgctgctacataactgccaaaataaaggaaacaccaacataaagcatCTTAATATggcattgggccaccacgagccgccagaacagcttctaTACTCTTTGGCagagattctacaagtgtctggaacttcctgtgtggaagcaccccATGCTTTCaatatcaaattttattggtcacatacacatttagcagatgttattgcgggtgtagcgaaatgattgtgctcttacctccaacagtgcagtagtatctaaaaaatgattcacaacaatacacacatctaaaagttaAATCATGGAATGTATAAATATTAGATCGAGCAATGTAGgcgtggcattgactaaaatacaatataatagaatacagtatacatatgagagagtaaagcagtatgtaaacgttattaaagtgacaagtgttTCATTATTGAAggggccagtgattccaagtctatatAGAGCAGCAGCCTCTAAGATGAAGGCTTGCGTAACcaggtggaagccggctagtgatggactgaaaaacagctaatatcaggtcccagctttgatgcacctgtactgacctcgtcttctggatgatagcggggtgaacaggccgtggctcaggtggttgatgtctttgaatatctttttggccttcctgggtgctgtaggtgtcctggagggcaggtagtttgccccttgtgatgcgttgggcagagcacaccaccctctggagagccctgcggttgtgggtggtgcagttgccctACCAGGCGTTGATACAGCCCAACGGGATGCTCTCAATTATGCATCTATAAAAGTTTGATAgttttaggtgccaagacaaAATTCTTCAGGCACCCCTTTCCCTGCACCCCtttcccagggccctcacctcctccctttatACTTTGCATCTCTTGTTTACTCAATAcgttcctttattttggcagttacatgtagAATGGACAGAGGTATTGCTGGAGTCGCAACAAAATGTTGCGGATAAAGTTCTGAATGACACAATATCTAAAGACCTAATAAAATGACATATTTGTTCATGTTTTTCAGGGCCCTCATACTACACAATGGGGAAGTGATTTGCTGTTTAGtgtaagtttctcaaaaacatGTGAAATCACAAAAAAGGTTTCctggacccttctataacatgccatttacatcaAAAAGAGTGATTTGGTTCTAAAAAAAAGGAAACTTCTCCTTTAAGTTTAAAATAGATACTGTCTTTTGGTTGGTGGTGCATTGGAACATACTGTACAATATAATCTATAAAACAATGTAGTAGATGCTCTCTGTCAGGCTATGCCTTCAGTCAGAGTTGTGAATACTAATCTGCTTTTTACTATTAAATAAAGGCCTTCTATATATATT

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953300.1 True 3109 mRNA 0.43 2 54842434 54853844

Neighbor

gene id symbol gene type direction distance location
LOC110496552 gmnn coding downstream 2512 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 189502 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 290117 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 524810 54316124 ~ 54317624 (-)
LOC110496544 LOC106588813 coding downstream 526789 54314224 ~ 54315645 (-)
LOC110496559 LOC106570512 coding upstream 1851008 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1874497 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2204693 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 2213996 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 2219618 57073462 ~ 57109628 (-)
G1563272 NA non-coding downstream 25105 54814861 ~ 54817329 (-)
G1563284 NA non-coding downstream 121925 54720215 ~ 54720509 (-)
G1563266 NA non-coding downstream 154951 54684013 ~ 54687483 (-)
G1563255 NA non-coding downstream 175769 54665729 ~ 54666665 (-)
G1563234 NA non-coding downstream 232734 54606755 ~ 54609700 (-)
G1563328 NA non-coding upstream 18942 54872786 ~ 54873168 (-)
G1563369 NA non-coding upstream 80846 54934690 ~ 54934917 (-)
G1563370 NA non-coding upstream 81412 54935256 ~ 54935466 (-)
G1563372 NA non-coding upstream 83215 54937059 ~ 54937506 (-)
G1563377 NA non-coding upstream 89301 54943145 ~ 54943722 (-)
G1563253 NA other downstream 176791 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 947485 53887137 ~ 53895002 (-)
G1562828 NA other downstream 966842 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1089751 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1627624 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3173667 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3221779 58074209 ~ 58078146 (-)
G1566972 NA other upstream 3313540 58167384 ~ 58167697 (-)

Expression


Co-expression Network