tppc3 (tppc3)


Basic Information

Item Value
gene id tppc3
gene name tppc3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54853906 ~ 54859078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165097.2
GTTCAGGAAGTTGGGTGTTTGACAGCTGATACAGAAAATAGATCACGGGGACCGCtttcaaataaacaaataaataaaggataaataccCAGTCATCTTTACAAGCCTGTAACCCAATACACTATGTCAAGGCAATCCAACCGAACCACAGACAGCAAAAAGATGAACGCAGAGTTGTTCACACTGACATACGGGGCCCTGGTAACccagctgtgtaaggactatgAGAATGACGAGGAGGTCAACAAACAGCTGGATAAGATGGGATACAATATCGGAGTGCGTCTCATCGAGGACTTCTTGGCACGCTCCAGCGTTGGGAGGTGTCAGGATTTCCGAGAAACAGCCGATGTCATTGCTAAGGTGGCGTTTAAGATGTACCTGGGCATCACCCCCAGTGTGACCAACTGGAGCCCGGCGGGAGACGAGTTCTCCCTCATCCTGGAGAGTAACCCCCTAGTGGACTTTGTAGAGCTGCCTGACAACCACAGCTCCTTGGTCTACTCCAACCTGCTGTGTGGGGTACTCCGAGGAGCTCTGGAGATGGTGCAGATGGCAGTGGATGTGAAGTTTTCTCAGGACACCCTGAGAGGAGACAATGTCACAGAGATCCGCATGAAGTTCATCAAGAGGATGGAAGAGAACCTACCGGCCGGGGATGagtgagagaaacacacagagcgtgagtgagagagagaaacctctacctctcctctcgctctccatccATCCTGAATCTGATGTCACTCAGGGGGGtacggagagagagggcgagaaagagGTATTGGGTAACCCTTCACTGAAAGAATGGAGACAAGGAAATTAAGTCCTTGGGTGTGTCTCAAACGTATTCTatcttcctctccttgtctccttcccttcatctgcaCCGTGTAAAGATAATGGATAGATAGAGGAGGGTTCAACTCAGGGAAGGAGAGGACTTGGCCTTTGAGATGCACCGTTTGGTTTATGGAAGGACTTCTGCTGAACTATGATCCTTGACCTTTACTGTCTGCTCATATGACCCCTGACCTTTCCCCTTTAATCTCTGCTCCTGGGATGAGGAACTCCTTGGCCACTTCATCACATGTTAATTTCTGAGAAAAACGTTGTCCCTTAGATATTGTCTAGGCTTTTTGTCTAGTGAAAGTAGTCAGGAAAAGCTCCTGGCCCATTACAAATGGAAATGTTTTTGATTTTAAATTCTGTTCATTTAATCAATTTAGATCACTGAATGGAATGTGATGGTTTCACTACCAAGTCAATTGTGTTGTACACGGTGGACCAGATTTTGACATGATAAGTTTTGTTTTGAcatttagttttttaaatataaGATCAGAGGTTCTGTTAATGTCTGTGTATAATATGTTTATTTGTTGTCTATGCattaaatacat

Function

NR:

description
PREDICTED: trafficking protein particle complex subunit 3 isoform X2

GO: NA

KEGG:

id description
K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165097.2 True 1403 mRNA 0.45 5 54853906 54859078

Neighbor

gene id symbol gene type direction distance location
armh2 cssa27h6orf229 coding upstream 26287 54823660 ~ 54827619 (+)
LOC110496551 fam65b coding upstream 36547 54738253 ~ 54817359 (+)
LOC110496550 LOC106588820 coding upstream 166025 54657406 ~ 54687881 (+)
LOC110496549 LOC106588818 coding upstream 218649 54631385 ~ 54635257 (+)
LOC110496548 LOC106588817 coding upstream 277462 54554378 ~ 54576444 (+)
LOC110496553 LOC106588826 coding downstream 192797 55051875 ~ 55171394 (+)
LOC110496554 LOC106588828 coding downstream 314628 55173706 ~ 55213167 (+)
LOC110496862 LOC106588838 coding downstream 1169792 56028870 ~ 56504444 (+)
LOC110496558 LOC106588839 coding downstream 1710282 56569360 ~ 56704104 (+)
LOC110496561 LOC106588843 coding downstream 1962456 56821534 ~ 56833489 (+)
G1562377 NA non-coding upstream 22458 54830351 ~ 54831448 (+)
G1562366 NA non-coding upstream 46536 54805589 ~ 54807370 (+)
G1562341 NA non-coding upstream 89268 54764248 ~ 54764638 (+)
G1562329 NA non-coding upstream 107717 54745750 ~ 54746189 (+)
G1562315 NA non-coding upstream 120084 54733544 ~ 54733822 (+)
G1562398 NA non-coding downstream 3719 54862797 ~ 54863017 (+)
G1563371 NA non-coding downstream 77746 54936824 ~ 54937486 (+)
G1563478 NA non-coding downstream 187327 55046405 ~ 55046605 (+)
G1563607 NA non-coding downstream 426866 55285944 ~ 55287562 (+)
G1563621 NA non-coding downstream 449347 55308425 ~ 55308791 (+)
LOC110496545 LOC106588816 other upstream 343160 54412770 ~ 54510923 (+)
G1561856 NA other upstream 976976 53872173 ~ 53876930 (+)
G1561845 NA other upstream 1013035 53817164 ~ 53840871 (+)
LOC110514975 LOC106588804 other upstream 1129242 53713836 ~ 53730416 (+)
G1561544 LOC106588750 other upstream 1565441 53277790 ~ 53288465 (+)
G1563547 NA other downstream 279570 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1049172 55908085 ~ 55908934 (+)
G1564638 LOC106607612 other downstream 1191510 56050588 ~ 56051793 (+)
G1565672 NA other downstream 2172543 57031621 ~ 57031963 (+)

Expression


Co-expression Network