LOC110496554 (LOC106588828)


Basic Information

Item Value
gene id LOC110496554
gene name LOC106588828
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55173706 ~ 55213167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953304.1
GTAGAGCTCAGCTGTCATCACTGGTCTTCTTGCGTGGCAGTGACGCTAACGAGACTACCACCTTGAAAGTCCTCCCAACAGTTCTGAGAGAACGCCACTTTTGAAGAGGAACAAGAAAGAGATCTGACAGCAGTTACTGCTCTCCATCCACATTCTCCGGTGTAGTCACGGGATTTCAATGTTCAACCTGCTCTTTTGTTTCTGTGTTGATTTGGGCCATACATATATGGCGTATGTGAGTGTCAGTGGAGACTTTTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCGGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAATCCCGGTCTCCTCCAACGATCCCCTGGGATACCGCGTAGTCCTTGGCCAGATCGCCTAGCTCTGTCCCCTGAGCCGCCAATAAGAAAACTGCTCAGTTCTCTTCTACTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCGCTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTGCCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTTACCGAGGAGCTGAAGAAGTTTGAGGTGAGCACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGGGGGGATCGAGGTCGTGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCCAGATAGTGGATGACTGGCTGAACCTGCTGAAGACCAAGTTCCGAGACGAGCCTGGCTGCTGCATCGCTGTGCATTGTGTGGCGGGGCTGGGccgAGCTCCAGTCCTGGTGGCCTTAGCTCTGATTGAGACCGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgAAGAGACGTGGAGCTTTCAACTCCAAACAGCTACTTTACCTGGAGAAGTACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCACAACTGCTGCGtccaatagtgtgtgtgtgtgtgtgcagcctctCCATCAAACAACATTATTCCAACCAATGGGAGATAAAACAACGAGAGAAAGCGATCAGTAATTAATGTGATTTGTTAACACTGAGACATGGCTAATTGATCACAGAATTGATGACCTAATGAGCGAATGATTCCATTTTAATGAATGCAAATCTAAAGGTCTGAACCAATGAAGGAAAAGGTCAAAGCACACAGACGTCTCCAAGTTATCGTTGCCCAATCATGGGCCTAGAATTTCTTTGAGTCCTTAATTTTTATTTTCAGTCTTGAATCATGGGATAgcttttccttcttttttttttacacacatgTACATGAAAGTTTAACGATGGTGATAAAAAAAACATCCGAAAATGTTAAGGTATCGATTGatcatttgtttatttttctgaTGATATTAATTATGCCAcgggttattttttatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggccaatcCCGGATGACGCTCGGCCATTGTgcaccgccctgtgggactccaaaacacaaccggttgtgatacagcctggaataaaaccagggtgtctatagtgacgcctctagcactgagatgcagtgccttagaccactgcaccaacTTTTTAATAAAAATTAATTGTTTTTACCCTTTAGCACATTACAATATTATTCTCTTTAGGACTaaaaataacagtccatttggctTATTGAGGTATTTTTTACAACACAAAATCTCCCAAAAGTTCTCCCAAAAAAAATGCAGTAATGTTTCCCGCCCCCTCTCGCTTCTAGTCACTTTTTAATTACGGGGTTGGCTGGGTTTGAAATATTATGTCCGCTGTATTTATTTACTGGCTATAACTCGCAGGCCAATCTGGATTTTGGTTGGGGCAAGGACTATTTTCAGGTTcttattgtcttttttttttttgccatcttaactttatttttattttttatttgttttacctCACAGGAGTGCAATATTCAGTCCACCTCGGAAAAGCCCCCAAACCCCCAATGACCGTcctgcgcacgcacacacacacacacacacacacacacacccatagagacagtTTCACAGGAAGACACTTGGCTAGTCTTACTGTAGGTACTTTTTTCCATTCATCAATGCTGCTTACTGGGTTTACAATAAGACTTCCTTACAATGACTGCACACGCACACAgtttcaagcacacacacagatgcacacacacacactctcaatgaTACAACTGTTAATCCCTACTCTGAAGGAAAGTAGGTGGAAAAGAAAGCAAATGGTCAGTTATTTTATCATTGTACCCATTTTGAAGACATTCCTATTGGTTTTAAGataaataaagacatttaaataAGA
>XM_036953305.1
ATGTTGGCAAAATACCAAGTGTTTCTGTGTTGATTTGGGCCATACATATATGGCGTATGTGAGTGTCAGTGGAGACTTTTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCGGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAATCCCGGTCTCCTCCAACGATCCCCTGGGATACCGCGTAGTCCTTGGCCAGATCGCCTAGCTCTGTCCCCTGAGCCGCCAATAAGAAAACTGCTCAGTTCTCTTCTACTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCGCTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTGCCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTTACCGAGGAGCTGAAGAAGTTTGAGGTGAGCACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGGGGGGATCGAGGTCGTGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCCAGATAGTGGATGACTGGCTGAACCTGCTGAAGACCAAGTTCCGAGACGAGCCTGGCTGCTGCATCGCTGTGCATTGTGTGGCGGGGCTGGGccgAGCTCCAGTCCTGGTGGCCTTAGCTCTGATTGAGACCGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgAAGAGACGTGGAGCTTTCAACTCCAAACAGCTACTTTACCTGGAGAAGTACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCACAACTGCTGCGtccaatagtgtgtgtgtgtgtgtgcagcctctCCATCAAACAACATTATTCCAACCAATGGGAGATAAAACAACGAGAGAAAGCGATCAGTAATTAATGTGATTTGTTAACACTGAGACATGGCTAATTGATCACAGAATTGATGACCTAATGAGCGAATGATTCCATTTTAATGAATGCAAATCTAAAGGTCTGAACCAATGAAGGAAAAGGTCAAAGCACACAGACGTCTCCAAGTTATCGTTGCCCAATCATGGGCCTAGAATTTCTTTGAGTCCTTAATTTTTATTTTCAGTCTTGAATCATGGGATAgcttttccttcttttttttttacacacatgTACATGAAAGTTTAACGATGGTGATAAAAAAAACATCCGAAAATGTTAAGGTATCGATTGatcatttgtttatttttctgaTGATATTAATTATGCCAcgggttattttttatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggccaatcCCGGATGACGCTCGGCCATTGTgcaccgccctgtgggactccaaaacacaaccggttgtgatacagcctggaataaaaccagggtgtctatagtgacgcctctagcactgagatgcagtgccttagaccactgcaccaacTTTTTAATAAAAATTAATTGTTTTTACCCTTTAGCACATTACAATATTATTCTCTTTAGGACTaaaaataacagtccatttggctTATTGAGGTATTTTTTACAACACAAAATCTCCCAAAAGTTCTCCCAAAAAAAATGCAGTAATGTTTCCCGCCCCCTCTCGCTTCTAGTCACTTTTTAATTACGGGGTTGGCTGGGTTTGAAATATTATGTCCGCTGTATTTATTTACTGGCTATAACTCGCAGGCCAATCTGGATTTTGGTTGGGGCAAGGACTATTTTCAGGTTcttattgtcttttttttttttgccatcttaactttatttttattttttatttgttttacctCACAGGAGTGCAATATTCAGTCCACCTCGGAAAAGCCCCCAAACCCCCAATGACCGTcctgcgcacgcacacacacacacacacacacacacacacccatagagacagtTTCACAGGAAGACACTTGGCTAGTCTTACTGTAGGTACTTTTTTCCATTCATCAATGCTGCTTACTGGGTTTACAATAAGACTTCCTTACAATGACTGCACACGCACACAgtttcaagcacacacacagatgcacacacacacactctcaatgaTACAACTGTTAATCCCTACTCTGAAGGAAAGTAGGTGGAAAAGAAAGCAAATGGTCAGTTATTTTATCATTGTACCCATTTTGAAGACATTCCTATTGGTTTTAAGataaataaagacatttaaataAGA

Function

NR:

description
PREDICTED: protein tyrosine phosphatase type IVA 2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953304.1 False 2426 mRNA 0.45 7 55173706 55213167
XM_036953305.1 True 2249 mRNA 0.45 7 55174113 55213167

Neighbor

gene id symbol gene type direction distance location
LOC110496553 LOC106588826 coding upstream 2312 55051875 ~ 55171394 (+)
tppc3 tppc3 coding upstream 314628 54853906 ~ 54859078 (+)
armh2 cssa27h6orf229 coding upstream 346087 54823660 ~ 54827619 (+)
LOC110496551 fam65b coding upstream 356347 54738253 ~ 54817359 (+)
LOC110496550 LOC106588820 coding upstream 485825 54657406 ~ 54687881 (+)
LOC110496862 LOC106588838 coding downstream 815703 56028870 ~ 56504444 (+)
LOC110496558 LOC106588839 coding downstream 1356193 56569360 ~ 56704104 (+)
LOC110496561 LOC106588843 coding downstream 1608367 56821534 ~ 56833489 (+)
LOC110496562 LOC106588845 coding downstream 1632006 56845173 ~ 56849827 (+)
LOC110496564 LOC106588844 coding downstream 1648330 56861497 ~ 56876018 (+)
G1563478 NA non-coding upstream 127101 55046405 ~ 55046605 (+)
G1563371 NA non-coding upstream 236220 54936824 ~ 54937486 (+)
G1562398 NA non-coding upstream 310689 54862797 ~ 54863017 (+)
G1562377 NA non-coding upstream 342258 54830351 ~ 54831448 (+)
G1562366 NA non-coding upstream 366336 54805589 ~ 54807370 (+)
G1563607 NA non-coding downstream 72777 55285944 ~ 55287562 (+)
G1563621 NA non-coding downstream 95258 55308425 ~ 55308791 (+)
G1563773 NA non-coding downstream 100290 55313457 ~ 55313770 (+)
G1563780 NA non-coding downstream 105097 55318264 ~ 55318516 (+)
G1563798 NA non-coding downstream 116466 55329633 ~ 55329929 (+)
G1563547 NA other upstream 34475 55138648 ~ 55139231 (+)
LOC110496545 LOC106588816 other upstream 662960 54412770 ~ 54510923 (+)
G1561856 NA other upstream 1296776 53872173 ~ 53876930 (+)
G1561845 NA other upstream 1332835 53817164 ~ 53840871 (+)
LOC110514975 LOC106588804 other upstream 1449042 53713836 ~ 53730416 (+)
G1564470 NA other downstream 695083 55908085 ~ 55908934 (+)
G1564638 LOC106607612 other downstream 837421 56050588 ~ 56051793 (+)
G1565672 NA other downstream 1818454 57031621 ~ 57031963 (+)
LOC110496571 hoxa7aa other downstream 1895961 57109128 ~ 57112335 (+)

Expression


Co-expression Network