LOC110496559 (LOC106570512)


Basic Information

Item Value
gene id LOC110496559
gene name LOC106570512
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56704852 ~ 56726308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953314.1
gtatgtgtgtgtgtgtgtgaggggcttTCAGGAGCTCCTGTGTTCACTGGGGCAGGCTGTAGGGCTGCGTTACAactctctctcattccatctctccctccatccaaccaTTCCTCTACACCACTTTTACTGGGTGGAATCTTCGGGGCTGTGCACATAGCCCCCATCCCCCTTTGGATTCCCTAACGTTTCTGTCCCGGCTTGAAGGAGAAGACAGGGGAGAGCGGGAGAAAGCAAGAGAAGAGAGGATTTagtgctgaggagagagagagggagaggagagagggatcatgACTGGACTCTCGGCTGTGTTGAAGAGCTGGGTCGCCCTGCAGACTCTGTGCCTGGCTCTGGCCCAAGTGAGCGGTCCTCCAGGACCTCAGGGCAATCCCGGCCTGCCTGGGCCCTCTGGCACCCCCGGGTCCGACGGCATTGATggGGAGAAAGGACCTCCTGGTCCTCCTGGCCCAACAGGCTTGAAGGGGGAGCCAGGTGAACCTGGTCCAGGTGGAGCTCCAGGAGAGAATGGCATTGACGGTTTGATTGGAGCAAAGGGAGATCGGGGTCCTGTCGGGAACCCTGGACCTAAGGGCCAGCCTGGACCTGGTGGTGAACCTGGACCCACTggacCCGGACTGCCTGGGCTCGCTGGAGCCCCGGGCCCAATTGGCCTCCCCGGTAAAATTGGACAGACTGGATCTCAGGGCATATTGGGAGCACCTGGACCTCCAGGAATTCCAGGACCCCCAGGAAAACCAggACCTCCGGGGAAGTtcttgggaggagaggagggcagcgCAGACTTCCAGTGTCCAATCAACTGCCCAGCAGGGCCTAAGGGTCCCCAGGGACTGCAGGGGGTCAAGGGACACAAAGGTCGTGCTGGTGTGCTGGGAGAGCCTGGTAGCATTGGGAAACTGggtacGAAGGGAGAGGTCGGCGTCTCTGGGGAACAGGGAATCCCAGGACCCCCGGGTCCTATGGGATTGAGGGGTTACCCTGGAATGATGGGCCCCAAGGGAGAGGTGGGACCTCGTGGTTACAAGGGCATCAACGGACCAGTTGGCCAACCTGGACCCCCAGGTGAGGAGGGACCCCAGGGACCACCTGGAGAGGCAGGGAAGAAAGGAGATTTGGGTGGCCGAGGTATCAAGGGCCCACATGGAGCCGTTGGCAAGAAGGGAGAGAACGGTCTGCCTGGTATTGATGGAAAGGACGGCACTCCTGGCATCCCTGGAATCAAGgGTGCCCCAGGGCAGGCTGGGAGGCCTGGTGGTCCCGGTCACCAGGGAACAGCAGGTTTGCCTGGCAGCCCCGGAACCAAGGGTGGACCTGGAGGCAAGGGAGAGCCTGGTCCCAGAGGCCATGTTGGAATGTCTGGTGCCCCAGGACCTCAGggTGAGCCTGGTCTTCCCGGTGAAGCTGGTATGGAGGGTGTTCCTGGTCCTAAGggTGACAGAGGCCAGAGGGGAGCTGTAGGGCCACAGGGTGTTCTCGGCAAGGCAGGCAACAAGGGTATGAGAGGACCCATGGGTGTTCCAGGGGCTCAAGGCATCTCAGGAACTAAGGGAGATaagGGATTCCAAGGAAAAGTTGGGGCGAAGGGTGACTTTGGGGATCCTGGTGTAGAAGGCTTGgctggggagaaaggagagacgGGTTTGGGTGGGGAGCCTGGACCCAAAGGACAGCAAGGAGTGAGGGGAGAGCTAGGGTTCAACGGCCCCACAGGAGACTCAGGTAAACCAGGAGACCAGGGACCAGGAGGACTGCCCGGGCCTCGTGGCCTCAACGGAGAGAGAGGACTGCCAGGCATGCCAGGAATCGTGGGGGCAGCTGGACGGGATGCATCTGACCAGCACATCATTGAGGTGGTTCTGAAGATGCTGCAAGAGCGTCTGGCGGCTGTAGCGGTGAGCGCTAAGCGTGCCGTACTGGGTGGAGCCGGTGTCATGGGTCCCCCTGGTCCTCCTGGACCCCCAGGAGCTCCAGGTGGTCAGGGCCCACACGGCCTCACCGGCGCCCGCGGCATCCCTGGCATGTTTGGAGCCTCCGGCCAGATTGGCAACACCGGACTGAAAGGAAAGAGAGGAGCAAAGGGAGACAGAGGAAATTCTGGCAAACCACATCCTGGTCAGCCAGGACCCCCTGGAATACCAGgTCCTCCTGGTATTGACGGCGTGGCTCGAAACGGTAAGCCTGGCGAGCGAGGCCCCCAGGGCTCGGCAGGAGAGGCTGGTCGTCCCGGTAAGGCGGGCCCCACTGGTCTTCCAGGGTTCTGTGAGGCTGCAGCCTGCCTAGCTGCCTCGGCCTACACCTCCCCCAGACTACAGGACTCCACCAGGGTCAAGGGCCCCGGAGTCTAACCTGAGACCTCTCCATCAAGAGCCCCACAAcaccaggagggagagagagagagagagagagagagagagagagagagagagacagacagaagagagagaggagggatagaggagagagaaagagagagaccactcTCCTTCATTGGATATCATTGAGAGCGAGAAGTGGGGGCAATACGATCGTGAATGATGTTGTTCCCTGACCCTTAAACTGATGACCTTCAGTTCTACTGTTTAGAGACTCTGTTTGCAACACATACCACATCCACCCACTTTAAATCACCATGATGACAGCCACTCACAGCCAATAACACCCCTCTGAATTTATAATCTCTGGTCAGGGATTGGCGGATGTAAATATCAGTCACGTCCAACTGCCCCACCCCcaccacagagggagagagaatgagagagagagacgtagtgACATCTGAACATCATGTCCAGGGACATCATTGATGACTTCATCATCAGCCGTAGCCCCTGGACTGGGAGGAGCAGAGATATACTTTGAGTCCAATGATTGGTGTTTTTGTTTTGTACCGTGGTCACTTTAAATTGGATTGATTTATATCTGAAATATTCATATTTAAATATATGTTTTGAGGGAAATAATGCAAACATATGCCCGCCTCCTCTCCCCACCAAACAACAAGTGCCGTACAAGTGTACACAAAGGTACCAATAAAATATTAAAATCAAAATCTACACTCCATACTGTACCTTTGGAAGATGTATTGCTAAACCTGTCACCTGTATGCTTGAGGGAAATAGTCAAACCCCTTTTTGTTCACATGTACAGTGCCACCCCCGTCCACTTTCGCCTCATTTAGAAACAAATTATTTCTTTAGATTTGATCTTTTTCTGTAGTTACCTGGCAACGGCATATCCTGATGGGCACTCCCATCTATCTCCCATAATACAGTGCTGTAAATCTTTGTAAATGTGTGTTGATTTTAtgtagagaaaaaaaagaggaTGGGTTAGAATATGAACCGACCAAAACAACCCCTGTGTTAATGAATCTAATCAGCAATAAAGTTTCAATGTTCAAATGACTGCTTTTCCAAACAGATCAGTTACACAAATCAATATTTATATGCCACTGTCAACTAACTTCCATGGAGTCAATCAATGTCAACATTCTAACAACAAACAGGACTGGTTATTTTCATTAACAGAAGCAATTCTATTTGTTGTTCTTTATATGATTCATCTGTAAAGACTTAGGTTAGATTTTTTTCCCTGGTTGTTCAGGTCAACCAATTCCAAACCAATAAAGAAGAACGTTTTGTAAAAACCTGAA

Function

NR:

description
collagen alpha-2(IX) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953314.1 True 3673 mRNA 0.54 32 56704852 56726308

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 1851008 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 1864930 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 2051920 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 2152535 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 2387228 54316124 ~ 54317624 (-)
LOC110496560 LOC106588840 coding upstream 2033 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 332229 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 341532 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 347154 57073462 ~ 57109628 (-)
LOC110496568 hoxa4aa coding upstream 364479 57090787 ~ 57094267 (-)
G1565404 NA non-coding downstream 743 56701428 ~ 56704109 (-)
G1565401 NA non-coding downstream 7715 56696822 ~ 56697137 (-)
G1565323 NA non-coding downstream 137521 56567096 ~ 56567331 (-)
G1565322 NA non-coding downstream 141356 56563215 ~ 56563496 (-)
G1565178 NA non-coding downstream 194416 56510226 ~ 56510436 (-)
G1565461 NA non-coding upstream 53646 56779954 ~ 56780159 (-)
G1565536 LOC106588845 non-coding upstream 118966 56845274 ~ 56849179 (-)
G1565574 NA non-coding upstream 169891 56896199 ~ 56896418 (-)
G1565575 NA non-coding upstream 171235 56897543 ~ 56897751 (-)
G1565638 NA non-coding upstream 271130 56997438 ~ 56997665 (-)
G1565122 LOC106613431 other downstream 216563 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2039209 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 2809903 53887137 ~ 53895002 (-)
G1562828 NA other downstream 2829260 53874410 ~ 53875592 (-)
G1566899 NA other upstream 1301203 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1349315 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1441076 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1684191 58410499 ~ 58411129 (-)

Expression


Co-expression Network