LOC110496560 (LOC106588840)


Basic Information

Item Value
gene id LOC110496560
gene name LOC106588840
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56728341 ~ 56737381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572529.2
CTAATGCGTTTTCTTGGGGCGTAGCCACGAGACGGTACAGAATATGCACTGTGTCAAGTTTCTGACACACTTTTTAAAGGTGGGGTAATTTACCTGAGAATCAGACACACTTTCATCTTCCAACAGGACAGAGAGCAAGTTGCAATGGGGGACACAGAGAAAGGGAAGAAGGCTTTTGTCCAGAAGTGTTCCCAGTGCCACACGGTGGATGAGGGGGGACGACACAAGGTGGGACCTAACCTCTGGGGCCTGTTTGGCCGGAAGACAGGACAGTCACCTGGATACTCATACACACAGGCCAACATCAACAAGGGTGTAGTCTGGGAGGAGAAGACACTAATGGTCTATCTAGAGAACCCTAAGAAGTACATCCCAGGTACCAAGATGATCTTTGCTGGTatcaagaagaagaaagagagagaggacctgATAGCCTATTTAAAGGATGCCACTTCGTAGACAGACACCGtatcatact
>XM_021572528.2
TACTAATGCGTTTTCTTGGGGCGTAGCCACGAGACGGTACAGAATATGCACTGTGTCAAGTTTCTGACACACTTTTTAAAGGTGGGGTAATTTACCTGAGAATCAGACACACTTTCATCTTCCAACAGGCAGACAGCATAGTTCTCTTTCTGTCCAGGACAGAGAGCAAGTTGCAATGGGGGACACAGAGAAAGGGAAGAAGGCTTTTGTCCAGAAGTGTTCCCAGTGCCACACGGTGGATGAGGGGGGACGACACAAGGTGGGACCTAACCTCTGGGGCCTGTTTGGCCGGAAGACAGGACAGTCACCTGGATACTCATACACACAGGCCAACATCAACAAGGGTGTAGTCTGGGAGGAGAAGACACTAATGGTCTATCTAGAGAACCCTAAGAAGTACATCCCAGGTACCAAGATGATCTTTGCTGGTatcaagaagaagaaagagagagaggacctgATAGCCTATTTAAAGGATGCCACTTCGTAGACAGACACCGtatcatact
>TU1790882
CGGTACAGAATATGCACTGTGTCAAGTTTCTGACACACTTTTTAAAGGTGGGGTAATTTACCTGAGAATCAGACACACTTTCATCTTCCAACAGGCAGACAGCATAGTTCTCTTTCTGTCCAGGACAGAGAGCAAGTTGCAATGGGGGACACAGAGAAAGGGAAGAAGGCTTTTGTCCAGAAGTGTTCCCAGTGCCACACGGTGGATGAGGGGGGACGACACAAGGTGGGACCTAACCTCTGGGGCCTGTTTGGCCGGAAGACAGGACAGTCACCTGGATACTCATACACACAGGCCAACATCAACAAGGGTGTAGTCTGGGAGGAGAAGACACTAATGGTCTATCTAGAGAACCCTAAGAAGTACATCCCAGGTACCAAGATGATCTTTGCTGGTatcaagaagaagaaagagagagaggacctgATAGCCTATTTAAAGGATGCCACTTCGTAGACAGACAC

Function

NR:

description
cytochrome c iso-1/iso-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572529.2 False 478 mRNA 0.48 3 56728341 56737379
XM_021572528.2 False 509 mRNA 0.48 3 56728341 56737381
TU1790882 True 464 TUCP 0.48 3 56728352 56737347

Neighbor

gene id symbol gene type direction distance location
LOC110496559 LOC106570512 coding downstream 2033 56704852 ~ 56726308 (-)
LOC118941190 LOC106588825 coding downstream 1874497 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 1888419 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 2075409 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 2176024 54525693 ~ 54552317 (-)
LOC110496863 NA coding upstream 321156 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 330459 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 336081 57073462 ~ 57109628 (-)
LOC110496568 hoxa4aa coding upstream 353406 57090787 ~ 57094267 (-)
LOC110496567 hoxa5aa coding upstream 364845 57102226 ~ 57105455 (-)
G1565404 NA non-coding downstream 24232 56701428 ~ 56704109 (-)
G1565401 NA non-coding downstream 31204 56696822 ~ 56697137 (-)
G1565323 NA non-coding downstream 161010 56567096 ~ 56567331 (-)
G1565322 NA non-coding downstream 164845 56563215 ~ 56563496 (-)
G1565178 NA non-coding downstream 217905 56510226 ~ 56510436 (-)
G1565461 NA non-coding upstream 42573 56779954 ~ 56780159 (-)
G1565536 LOC106588845 non-coding upstream 107893 56845274 ~ 56849179 (-)
G1565574 NA non-coding upstream 158818 56896199 ~ 56896418 (-)
G1565575 NA non-coding upstream 160162 56897543 ~ 56897751 (-)
G1565638 NA non-coding upstream 260057 56997438 ~ 56997665 (-)
G1565122 LOC106613431 other downstream 240052 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2062698 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 2833392 53887137 ~ 53895002 (-)
G1562828 NA other downstream 2852749 53874410 ~ 53875592 (-)
G1566899 NA other upstream 1290130 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1338242 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1430003 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1673118 58410499 ~ 58411129 (-)
G1567875 NA other upstream 2131982 58869363 ~ 58870007 (-)

Expression


Co-expression Network