LOC110496561 (LOC106588843)


Basic Information

Item Value
gene id LOC110496561
gene name LOC106588843
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56821534 ~ 56833489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572530.2
GGGTGAAAGAACAGGTTCGGGATATTTACTTTGTATTATAAGTCGTTTGTAACACCATACATAAACGGGAGATTCCCGTAGATCATAGTTTTATCTAAGTTTAAATTATTTATTGTATTCGATTGTGGTACAGTTCTTCGTTTGAGGACATGTCTCTGTCAGGAAGTTATCAGAAACCGGTAGtgcagtagctagctatctaaagctTTCGCCGGCCGCGTACAGTCAGGCAGACCTCTTTGTCTGATTGGAAAAGCGTGTTCTTTTGTTTGGCATTTTCTTTGTTTGGTAGtctaaagtgaactctggggccaGCGTTTCTCCACAGACGTTCTTCCAAAAGTGTGAAAAATATGCAAAACGTGAAGAAATACTTCACAGAAGGACTGATCCAATTTACGATCTTACTCAGTTTGATCGGAGTTCGCGTGGATGTCGACAGTTACTTGAACGGCTCCTACTCACCGCTAGAGATTAGCGACGGTCCTAGCTCAGCCTACATCCAGACACCGTTTCACAGTTTGAGGGACAACTGGGACGGGTACAGCGTGCACCCCAAATGTCCCGAGTTGGATTATTTCTTCGCCTGCCGTCGGCTCCTGGATGAGGTGAGGGCGCTTGGGTCGCCCATCCGGTTCCCTACGCAGCTGAGCGCGTGGCTCGTACACCAAGTACCTGACAGCTCTGAGTTCCGAGAGCCACCAAACAGCACGAGTAACAGTAATGTTAGCGCGGGGCTGTTGTCAGAGAGTACCGGGGAAGAGGCCAACGACACTGAACTTCTCGCCGTCGACGAAAGCCATACTGCCCCCCAGCTAAGTGGGCCGGGGCCTTATCCCAGCACTGGAGCCTGCGAGATACCCAATGAGGAGGTTGAGGAACTGAAGGGGCGGATCCAAGAGTATGGTGATGAAGGCAGAGAGGAACCTGTTTCCCTGACCCAGCTGGCTCTCAGTTCCACACTAGAACATGAGGGTTTGTTAGGTAGCGGAGCCCCTCTCTCCAGCTCTGAGGACCCCCACCCCCCTGACATCGACCAGCACTGGAGCCAATTCCTGTCCCTACCCATCTATGAATTTGACgATTTAGACCCACTGGTTCCTCAGCAGCTGTCTGATCTCGACGCCGACATCTCCAGCGCCATCAGCCAGGATGTCAGTCTCCGCGATGCCATGGTAACAGGCTCCGTCTACGACATGATCCCCCCGAGGGGTGGAGTCAGGACCCTGGTGGCACGGCAACCAAGAGGGCCCCTCTTCCGACTCGAGTCCACAAACTCCTCCAACTCGTCACCTGGTACAACCACAGGGCTGGTTGCACTACCGAACGCTGTGGTGGTCAACGGAACACGAAATGGGTCATCGTCCCATGGTGCACTGGAAGGCTGTTTGGATGAGGCAGTGTTTGACCAGATCAACCTCCTGGGGCTGGATGGCTGCTTGGAAACCATGGACGCCCAGCTGCTGGGGATTCTACAGGGCATCGACCCTCGTGTCCTGGAGGACCTTGACTCAGACTCCGGTCTTTCCCTGGAGAGCAGCTCTCGAGGCCCAGACTCCCCAAGTGCATCTGAGGTGTCGTCATCGTCTTCCAGTTCGTTTTTTGAGGATGAGGGTGGGGCTACGGGCTACAGCAGTGAGGTGGACTCCCTCCCCTCCAAGAGCATTGCCAACTACCACACATGGTCGCCTGTGGATTTCAGCGAGAGCGTGTGGCACGACCACAGCTACTCCTCCGCAGCCTTCTCCGAACCGTCAGCCACCACTTTTCCCCACAAAGCCATCAAAGAGGAGCCTTTCAGCGATGAAGACGGGGAAGATGACGAAGCCCGGGAGCTTAGCCGCGACGAACTCCGCACCCGGGCCCTGCATGTCCCGTTCTCGGCGGCGGAGATCGTCAGCATGCCCGTAGAGGAGTTTCTGGAGCTCCTGGAGGGGCATGGCCTCTCGCCCACCCAGGTTGCCTTCCTGAGGGACATCAGGCGGCGAGGGAAGAACAAGCTGGCGGCGCAGAACTGTCGCAAGCGCAAGCTGGATGCTATCACGGGGCtccaggaggaggtggagaggctgCAGGCCCAGAGGAGCAGGCTGCTCAGGGAGAGGCAGCACACGGCCAAGGCTCTTGGTGCCGCAGGCCAGCGCATGGAGCACCTCTCCAGGGacatattctccaggctgagggACGGCTCAGGACGACCCCTGACCCCAGAGAGATACACCTTGCAGTGCGAGGCCAACGGGAGGGTCGTGGTGCAGCATATCAGGCGGCCTAGTGTTGCCACGACAACAGCTGGAGGTAAACCGGACAaaaggaagaaggagaagaagccTTGATGCAGCAAGGGCTGCTGGTACTTGATACTTTTTAAGGGgtgttattgttttttttctgaaCTTACAGTCCAGATTCTGGTCTTGTGACTGTTTCCgtatctttctcttcctccttgtCTGGACTCTTTGACCTTGGGAGCCTAAAAGGGCAGACACTTATGTTAAATAAATACACCCaaaaacatacaaataaatacacccaaaaacatacatttaaatACAAATATTACAGAATGTGTGAATGgagtttttttctctttttttttctagAAAAATAATCATACCTCAAACACTGGACTCTTAACGTTTTCCTCACTATGTAAAGGAAAGGTTTGTATTATCTTTAAAGCATTTCTTACAAGGAGGATATATTGTTGTCCTGAGGATGTCAGGCTGCAGTATCATTTGTATAATTCCTACAAAAATAAATTGTAGGCCAgttaaaatgaaaaacagaacACCAATTCTATATCTTAAAGGGAccctttgggattttggcaatgaggccatATATCTACCTGAGAAAATAAAAGACTTCCCCATAGTCAGACCAGCTCGTGGATAccatgtgtatgtctgtgtcctgtatgaaggaagttagaggtagtttcacaaGCCAATGCTTACTAGTGTTagctcaatgactggaagtctatactAACAGATACCCATAGACTAGTTAGCAATTACTCTAGAGCTAGTTAGCAACTAACTTCAAACTGCACGCAAAGACATAGAAATgctatccacaagttcatctgactggggaagtagataaaaggcttcattgccaaaatcctgaagtaccCCTTTAACTTCAACGGTATCTAGATTCAGATTCTGATCTATGTTCCCTCATAGACCTTAGTTCTGGAGTTTAAGTTGAAATGTTTCAAAACTCAATCTAACTGGCGATATGTTAGACATGTCATTTGAAAGGCCTTATTTTAATTTGGAATCATGTTTTGATAGTTGTGTATTGGTGAAACACAGATGTACATGGCTATTGCTTTATGTGTGATCAATTTTtgtatgtttaaaaaaacaaatctaaataacttttttt

Function

NR:

description
nuclear factor erythroid 2-related factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572530.2 True 3402 mRNA 0.49 5 56821534 56833489

Neighbor

gene id symbol gene type direction distance location
LOC110496558 LOC106588839 coding upstream 117430 56569360 ~ 56704104 (+)
LOC110496862 LOC106588838 coding upstream 319943 56028870 ~ 56504444 (+)
LOC110496554 LOC106588828 coding upstream 1608367 55173706 ~ 55213167 (+)
LOC110496553 LOC106588826 coding upstream 1650140 55051875 ~ 55171394 (+)
tppc3 tppc3 coding upstream 1962456 54853906 ~ 54859078 (+)
LOC110496562 LOC106588845 coding downstream 11684 56845173 ~ 56849827 (+)
LOC110496564 LOC106588844 coding downstream 28008 56861497 ~ 56876018 (+)
LOC110496570 NA coding downstream 252192 57085681 ~ 57087010 (+)
LOC110496572 NA coding downstream 255063 57088552 ~ 57099306 (+)
LOC110496571 hoxa7aa coding downstream 275865 57109128 ~ 57112335 (+)
G1565483 NA non-coding upstream 4725 56816527 ~ 56816809 (+)
G1565476 NA non-coding upstream 13182 56807871 ~ 56808352 (+)
G1565206 NA non-coding upstream 56118 56725947 ~ 56765416 (+)
G1565307 NA non-coding upstream 72145 56748332 ~ 56749389 (+)
G1565273 NA non-coding upstream 124400 56696860 ~ 56697134 (+)
G1565523 NA non-coding downstream 55158 56888647 ~ 56888928 (+)
G1565524 NA non-coding downstream 55590 56889079 ~ 56889329 (+)
G1565529 NA non-coding downstream 66675 56900164 ~ 56900477 (+)
G1565533 NA non-coding downstream 72034 56905523 ~ 56905833 (+)
G1565639 NA non-coding downstream 165248 56998737 ~ 56999042 (+)
G1564638 LOC106607612 other upstream 769741 56050588 ~ 56051793 (+)
G1564470 NA other upstream 912600 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1682303 55138648 ~ 55139231 (+)
LOC110496545 LOC106588816 other upstream 2310788 54412770 ~ 54510923 (+)
G1565672 NA other downstream 198132 57031621 ~ 57031963 (+)
LOC110496591 LOC106588881 other downstream 1017732 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 1083126 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 1107608 57941097 ~ 57946763 (+)

Expression


Co-expression Network