LOC110496564 (LOC106588844)


Basic Information

Item Value
gene id LOC110496564
gene name LOC106588844
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56861497 ~ 56876018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953315.1
AGCCATAGATTAAATTGTACGAATAAGAGTCAACATGTTCTTCTATAGCCTTCATCCAAGTCTTGTGGTTGTCATAAGTGGCCTCAATAGTCTAAATGGCTTCCTCTTCCTGGCTCCTTTAATGTTTTTTCTTCAGCTGCACTGATCTGAAAATACAGGACAGACAGATTGAAGCGATATGAAAGAAGCTctcatccttttttttttttgcatatgatCGTTGGTAAATCGTTATTTTAACATAAAATTTGTCCTTAATGATTGAAAATAATACAAGTGGAGGAAGCAAGCttgactattgagatgcaccccataTTGTCAATCATCTTGCAATGTACTATCTGCTAATTGCAATTAGGGGTAGGTGTGCACTGGAACTAAAACTGACTAAAGTCAGCGGTTATTTTACCAGTAAACAATACTGTGGGGGGGAAGTCAGCAAAGAAAGACCCATCCGCTCCTATAGCGCAGTAAAAtaattgtttatttaaaaaaaaacattttttttatatgcGCGATTTGGTTTTACACCAGTTTTAACAGGTCCAAAATAATCACACAATTTCAGACCAGGAGCGTGTACGTACGAAAGGAAACAGAGCGCGCGCCTCATTATCATATTCAAACGAACTGCAGCCGGCAGACCCGCGAAATAGAGCACTCAGTGAAGAATAGCCTGCTCATGCGGCACTAACGAATTGCCAGCTGAAAGGATAAATAATCCGATACAAAAGATTCCAGTCTACGATGGAGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTCTGGGTCCAGGAGCCACAATTCCACAAAGATGACTTCTGGCACACGCACGTTGACTATGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTCTGTGCGGAGGCGATACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAACACTATGCTCATTATCCTCCAGGACCCCCTGCTGCTGTCTGACAGTAGAGTGCACCTGTTCCTCCAATCCCAGCTGAGTATGACCAAGATGGAGGCATGTGTCTTGGGTCGGACACGCTACACAGTGGCACAGGCCATCCAGATGTGTAGTGACTGTCACCGCACACGCTTCCCCATAGAGAAGGGCAGCAAGGTGTACTTCAACTCAGACTGTGAAAGCCTCACCAGCACCACGTCAAGTCTGGGCCACAGCCATGACTCTGGGGTCCCCCAGAGCCCCAGCCCTCTACCCTTTGACTGCAGCACCTGTAAAAATTCTGACGGCAACATTCGCATCCGGGATGAGGGATTCTTCAGCAGTCTGTCAGAGTCGTCGTGTGACCAGGAACACATGGAGCCCTGACACACCActtccacacacacgcacaaagggGCTGTTTCCCAGACAAAGATTAAGCCTTGTCCTTTCAAGTGCTTTTTATTCCATGGCTAGGCTTAATCTTTGTCTGGGAAACCACTCAAAAGACTGTTTGCTACTGTTCCTGATGTGCTTCTCAAACCTCTGATTAACTGGTGGCGTAGAAAGGTATTTTTATGTGGTTCTGTTGGAATTCTCTCTGCGTCCCCATCGGTCTTTTTAAAATGACTGAGCCATGTTTTCTTAAAGGATTATTTTATTGACATACCCTCTATTGCGGACCAACTGGTGTTACTAGTGAATGAGTCTTGTCCAAAACAGAATGTTGTCTTAATGCAATATCTCATTCTTGAATTCTAACTTGTACCTTACATTTTGTTCCTTTGTATGTGAATCGGTTTACCTGCAATCATACTAGGAAAGGTTTTTAAATTatacttttaaaaaaataataataatttgcacGATTAAACTGTGCTATAAGGTTAGCAAGGGAGGCCGAGTGTTGTATAGGCTCACTTTTTAAAGTATTCCAAGtatcaatttttttatttttaagaactAACTTGATGGTTTATTGACTTGGTGGTTGGTGCCCTTTGAAATCCTGGAATGTCCAAGTAATTTTTGTTGAAATGTGCTTTGGTTTCTTAAGGTTATCCCTGGGCTTTCCTTCAGCATTAACTTCAGTAGGCTTAGAAGAGGCTGGTGGAAAGTGCTGTAAGACTTATTGTGATGGCTGCTATGGTATCAAACATATGAAACCACATTTGACGCTTCCATTCCGCCATGACAATGAGCCTGtcttatagctcctcccaccagcctctggCCTAGATGTCTTCTGTTATGAGTGacgatctatactgaacaaaaatataaacatgtaaagtgttggtcctatgagctgaaataaaagatcccagaaatgttcaatatg
>XM_021572534.2
GATTAAATTGTACGAATAAGAGTCAACATGTTCTTCTATAGCCTTCATCCAAGTCTTGTGGTTGTCATAAGTGGCCTCAATAGTCTAAATGGCTTCCTCTTCCTGGCTCCTTTAATGTTTTTTCTTCAGCTGCACTGATCTGAAAATACAGGACAGACAGATTGAAGCGATATGAAAGAAGCTctcatccttttttttttttgcatatgatCGTTGGTAAATCGTTATTTTAACATAAAATTTGTCCTTAATGATTGAAAATAATACAAGTGGAGGAAGCAAGCttgactattgagatgcaccccataTTGTCAATCATCTTGCAATGTACTATCTGCTAATTGCAATTAGGGGTAGGTGTGCACTGGAACTAAAACTGACTAAAGTCAGCGGTTATTTTACCAGTAAACAATACTGTGGGGGGGAAGTCAGCAAAGAAAGACCCATCCGCTCCTATAGCGCAGTAAAAtaattgtttatttaaaaaaaaacattttttttatatgcGCGATTTGGTTTTACACCAGTTTTAACAGGTCCAAAATAATCACACAATTTCAGACCAGGAGCGTGTACGTACGAAAGGAAACAGAGCGCGCGCCTCATTATCATATTCAAACGAACTGCAGCCGGCAGACCCGCGAAATAGAGCACTCAGTGAAGAATAGCCTGCTCATGCGGCACTAACGAATTGCCAGCTGAAAGGATAAATAATCCGATACAAAAGATTCCAGTCTACGATGGAGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTCTGGGTCCAGGAGCCACAATTCCACAAAGATGACTTCTGGCACACGCACGTTGACTATGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTCTGTGCGGAGGCGATACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAACACTATGCTCATAGAGTTGCCCAAACTGCCTCCCCGGAACCCTTTCTTCAGTATGAAAAACCCCTACAAGGTCAACCAGAGGATGAATGGCCTGCGGGAGTTTCTAGAGATTATCCTCCAGGACCCCCTGCTGCTGTCTGACAGTAGAGTGCACCTGTTCCTCCAATCCCAGCTGAGTATGACCAAGATGGAGGCATGTGTCTTGGGTCGGACACGCTACACAGTGGCACAGGCCATCCAGATGTGTAGTGACTGTCACCGCACACGCTTCCCCATAGAGAAGGGCAGCAAGGTGTACTTCAACTCAGACTGTGAAAGCCTCACCAGCACCACGTCAAGTCTGGGCCACAGCCATGACTCTGGGGTCCCCCAGAGCCCCAGCCCTCTACCCTTTGACTGCAGCACCTGTAAAAATTCTGACGGCAACATTCGCATCCGGGATGAGGGATTCTTCAGCAGTCTGTCAGAGTCGTCGTGTGACCAGGAACACATGGAGCCCTGACACACCActtccacacacacgcacaaagggGCTGTTTCCCAGACAAAGATTAAGCCTTGTCCTTTCAAGTGCTTTTTATTCCATGGCTAGGCTTAATCTTTGTCTGGGAAACCACTCAAAAGACTGTTTGCTACTGTTCCTGATGTGCTTCTCAAACCTCTGATTAACTGGTGGCGTAGAAAGGTATTTTTATGTGGTTCTGTTGGAATTCTCTCTGCGTCCCCATCGGTCTTTTTAAAATGACTGAGCCATGTTTTCTTAAAGGATTATTTTATTGACATACCCTCTATTGCGGACCAACTGGTGTTACTAGTGAATGAGTCTTGTCCAAAACAGAATGTTGTCTTAATGCAATATCTCATTCTTGAATTCTAACTTGTACCTTACATTTTGTTCCTTTGTATGTGAATCGGTTTACCTGCAATCATACTAGGAAAGGTTTTTAAATTatacttttaaaaaaataataataatttgcacGATTAAACTGTGCTATAAGGTTAGCAAGGGAGGCCGAGTGTTGTATAGGCTCACTTTTTAAAGTATTCCAAGtatcaatttttttatttttaagaactAACTTGATGGTTTATTGACTTGGTGGTTGGTGCCCTTTGAAATCCTGGAATGTCCAAGTAATTTTTGTTGAAATGTGCTTTGGTTTCTTAAGGTTATCCCTGGGCTTTCCTTCAGCATTAACTTCAGTAGGCTTAGAAGAGGCTGGTGGAAAGTGCTGTAAGACTTATTGTGATGGCTGCTATGGTATCAAACATATGAAACCACATTTGACGCTTCCATTCCGCCATGACAATGAGCCTGtcttatagctcctcccaccagcctctggCCTAGATGTCTTCTGTTATGAGTGacgatctatactgaacaaaaatataaacatgtaaagtgttggtcctatgagctgaaataaaagatcccagaaatgttcaatatg

Function

NR:

description
sorting nexin-10B-like

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0061512 protein localization to cilium biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953315.1 False 2308 mRNA 0.42 6 56861497 56876018
XM_021572534.2 True 2400 mRNA 0.43 7 56861504 56876018

Neighbor

gene id symbol gene type direction distance location
LOC110496562 LOC106588845 coding upstream 11670 56845173 ~ 56849827 (+)
LOC110496561 LOC106588843 coding upstream 28008 56821534 ~ 56833489 (+)
LOC110496558 LOC106588839 coding upstream 157393 56569360 ~ 56704104 (+)
LOC110496862 LOC106588838 coding upstream 359906 56028870 ~ 56504444 (+)
LOC110496554 LOC106588828 coding upstream 1648330 55173706 ~ 55213167 (+)
LOC110496570 NA coding downstream 209663 57085681 ~ 57087010 (+)
LOC110496572 NA coding downstream 212534 57088552 ~ 57099306 (+)
LOC110496571 hoxa7aa coding downstream 233336 57109128 ~ 57112335 (+)
LOC110496577 NA coding downstream 261470 57137204 ~ 57140625 (+)
LOC110496950 LOC106588852 coding downstream 287107 57163125 ~ 57167993 (+)
G1565483 NA non-coding upstream 44688 56816527 ~ 56816809 (+)
G1565476 NA non-coding upstream 53145 56807871 ~ 56808352 (+)
G1565206 NA non-coding upstream 96081 56725947 ~ 56765416 (+)
G1565307 NA non-coding upstream 112108 56748332 ~ 56749389 (+)
G1565273 NA non-coding upstream 164363 56696860 ~ 56697134 (+)
G1565523 NA non-coding downstream 12629 56888647 ~ 56888928 (+)
G1565524 NA non-coding downstream 13061 56889079 ~ 56889329 (+)
G1565529 NA non-coding downstream 24146 56900164 ~ 56900477 (+)
G1565533 NA non-coding downstream 29505 56905523 ~ 56905833 (+)
G1565639 NA non-coding downstream 122719 56998737 ~ 56999042 (+)
G1564638 LOC106607612 other upstream 809704 56050588 ~ 56051793 (+)
G1564470 NA other upstream 952563 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1722266 55138648 ~ 55139231 (+)
LOC110496545 LOC106588816 other upstream 2350751 54412770 ~ 54510923 (+)
G1565672 NA other downstream 155603 57031621 ~ 57031963 (+)
LOC110496591 LOC106588881 other downstream 975203 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 1040597 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 1065079 57941097 ~ 57946763 (+)

Expression


Co-expression Network