LOC110496863


Basic Information

Item Value
gene id LOC110496863
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57058537 ~ 57061029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496863
ATGAGTATCTCCTTAGATTACGGAATTACAACTTTCCAGTCATGCGTGGTCATTAGAACAACTGTGGGGCAGATGCGCGCTTCATGCCCAGTAGAGATGGTATCCCTCACAGACATGGTCATACCAGACTCCTACCAGCTCTCTGGGCTTAGCCTATGGTGCCCATCCTGCCTGCATCTCGGGTTATGGACGCCAGGGCTTCTGTACCACCCACAACTATTACGcactgaaccaggatgtggagtcGGTCACGGGGTTCCCCCAGTGCGCCTGGTTAATGTACTCCAGGAACATTTCCTCATCCATGGTACCGCAGCATTGCCAAGGTTACGGGGTGCGGCCCTTGGTCAGCTCCATTGCGCTCATTCTACCTATGGTGGTGAGCACAAGCAGGCCAACCTGTGTCCTTTCAATGGGTGCTTGAACCCGCTGCCACCCCTGCACGCGGCCCACCTTGACGCGTGCTGCTCGCCCCTGTCAGAGAGAGCCTCCAACTCACAGACCTTCGACAGGATGAAAGTGAAGAGGAACCCGCCGAAGACAGcactctccaagGAGTTCATCTTCAACAAGTACCTGACCCAGGCACGGTGCGTGGAGATCACCACAGCGTTTCAGCTAAACAAGACTCAGGTCAAAATCTGCTTCCAGAATCGCCGGATGAAACAGAAGAAGCGCGAGAAGGAAGGCCTGCTGCCCAACAAAGCCCCTGCGTCAGACCTGGTGATAGCTGCCTGGTGA

Function

NR:

description
homeobox protein Hox-A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496863 True 741 mRNA 0.55 3 57058537 57061029

Neighbor

gene id symbol gene type direction distance location
LOC110496560 LOC106588840 coding downstream 321156 56728341 ~ 56737381 (-)
LOC110496559 LOC106570512 coding downstream 332229 56704852 ~ 56726308 (-)
LOC118941190 LOC106588825 coding downstream 2204693 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 2218615 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 2405605 54636849 ~ 54652932 (-)
LOC110496566 hoxa2ab coding upstream 6811 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 12433 57073462 ~ 57109628 (-)
LOC110496568 hoxa4aa coding upstream 29758 57090787 ~ 57094267 (-)
LOC110496567 hoxa5aa coding upstream 41197 57102226 ~ 57105455 (-)
LOC110496569 hoxa7aa coding upstream 41197 57101716 ~ 57114109 (-)
G1565715 NA non-coding downstream 1441 57056799 ~ 57057096 (-)
G1565681 NA non-coding downstream 22046 57036254 ~ 57036491 (-)
G1565674 NA non-coding downstream 25831 57032409 ~ 57032706 (-)
G1565671 NA non-coding downstream 27066 57031271 ~ 57031471 (-)
G1565665 NA non-coding downstream 35159 57023161 ~ 57023378 (-)
G1565781 NA non-coding upstream 15099 57076128 ~ 57076570 (-)
G1565789 NA non-coding upstream 45816 57106845 ~ 57107370 (-)
G1565122 LOC106613431 other downstream 570248 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2392894 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 3163588 53887137 ~ 53895002 (-)
G1566899 NA other upstream 966482 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1014594 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1106355 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1349470 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1808334 58869363 ~ 58870007 (-)

Expression


Co-expression Network