LOC110496566 (hoxa2ab)


Basic Information

Item Value
gene id LOC110496566
gene name hoxa2ab
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57067840 ~ 57070602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572540.2
ACCGTTTTGGAACACATTGGATTGTTAGGGGTTGTTGCTGTCAGGATCTCTAAATATCAGTTTATGGGGTGTTTTTTCCCAGAGAGAACTCTACATGAATGGCTAACTTTGCTAATGACCGCATGCATAGTGTGTAGCTACTGGTGTAATTTGTGTGGCGCGGGGGCGTTCTCTCCAGACATACTCAAACAATACGAGAAAATAGGACTGCATGAGCCCGGGCAATATAGTTACTTCACTTTCACAGCGCTCAGACAGCCATTCTAAAAAAACATTCATAGTTTAGTTGACTAGGAGGCTAGGGGACAATAAACTGGGGTGGGCGTAAAAAAGGTGTAAATAAAAACAGCCGTCCCCATAGAGACAAGGCGTTCTTCACCAGAGTTTTTGGATCAATCACGCAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCATTGGGCAGAAGTTATCATGTGACTTGGCTCCAATTTCAACCTTGTCTCCATGAATTCAATAGTTTAATAGCTGTTCGGTCACCATACGGCCGTAATCAGTGAATTTGAAAAAAATGCCACCACCTCTTTCTCATTGAGCCGCTACATTTATAAAAATACGCGCAGCAAACTTTCCTCGGCTCTCAGCGAGCGGAGATGAATTACGAATTCGAGCGAGAGAGCGGTTTTATCAATAGTCAGCCTTCGCTTGCTGAGTGCCTGACATCTTTCCCCCCTGTCGGTGATTCATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACACTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTCAACCCAGGCATCCACCCGAGGCATAGCCGGCCCAGACACAGCCCCGATGGATGCATCCCGCTGCCCACTGCCTCCCTACCCCCGGAATACCCCTGGATGCGAGAGAAGAAAGCCTCCAAGAAGAATCACCTGCCGACTTCCACCGCGACTGCCATAACGAGTGGACCTGTATGCTTCTCCCCGGAAGGTTCGCCGGAGATTctagagagtggaggagagggttCCCGGCGGTTGAGGACTGCGTACACCAACACACAGCTcctggagctggagaaggagTTCCACTTCAACAAGTATCTTTGCCGACCGAGGAGGGTGGAGATAGCCGCCCTGCTGGACCTCACCGAGCGGCAGGTCAAAGTATGGTTCCAGAACCGGCGCATGAAGCACAAGAGGCAGACCCAATGCAAGGAGAACCACAATGGCGAAGGGAAAGAGCCGAGTGCTGAGGACAGGACCCAGAGcgacgaggaggaggatgagggctCGGTGTTTGAGCAGAGCCTCAATATAGTGACCGGGGCCCTTATGGAGAGAGGGGCCTGCTCCTTTCAGCAGAACTCACTCAGTACTTCCCAGCAGCTCCAGAATGTTGGCCCGCACAATGGCGTGGCCCAGAGTTACACAGTTTTACCACTGAGCAGCAATGACAAAAATCTGAAGCATTTCCCCAACCCGTCACCCACTGTTCCAGGCTGCGTGTCAACAATAGGGCCCGGCTCTGCACCTGGCCAGGACAATGGCGGTAGTCCCGCGGCCCTGGACGTCTCAATACAAGACTTCCAAGTATTCTCCTCGGATTCTTGCCTTCACTTCTCTGATGCCACCTCGCCTAGTGTGTCAGAATCCCTGGACAGCCCCGTGGACAATCTGGACATATCTACCGACAACTTCTACTTTTTCTCGGAGTCATTAACTACAATTGACTTACAGCATCTGAGCTattgaaatcaatgaaaaatAGAGCGAGACTTTCACCTGGAACatttaaagaaagaaaaaaactcCGGTATTAACTATGAAGTAAATTTTGGTGGTTGTTTGATATGATCGGCACATTTCCTTTTTATTGATTAATTGATTAGGCCTAGTCGATTAATTCAAGGTAAGAGTCTGGAAAAATATACCATTGTGGCCTGCAATTACAATAACACAATTATTTCTTAAGATGCAATAATATGGGTATGTGAAAAGTTGCACAATAGTATGAATTCTGGTCATTTTATTTTTGTATAGCTTACAGTGCCATGGATATTTTTGTTAGAATAAATCTGACTTGCTATAAGGAACTTGCAA
>TU1791342
ACATATCTACCGACAACTTCTACTTTTTCTCGGAGTCATTAACTACAATTGACTTACAGCATCTGAGCTattgaaatcaatgaaaaatAGAGCGAGACTTTCACCTGGAACatttaaagaaagaaaaaaactcCGGTATTAACTATGAAGTAAATTTTGGTGGTTGTTTGATATGATCGGCACATTTCCTTTTTATTGATTAATTGATTAGGCCTAGTCGATTAATTCAAGGTAAGAGTCTGGAAAAATATACCATTGTGGCCTGCAATTACAATAACACAATTATTTCTTAAGATGCAATAATATGGGTATGTGAAAAGTTGCACAATAGTATGAATTCTGGTCATTTTATTTTTGTATAGCTTACAGTGCCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572540.2 False 2107 mRNA 0.48 2 57067840 57070602
TU1791342 True 374 lncRNA 0.32 1 57067888 57068261

Neighbor

gene id symbol gene type direction distance location
LOC110496863 NA coding downstream 6811 57058537 ~ 57061029 (-)
LOC110496560 LOC106588840 coding downstream 330459 56728341 ~ 56737381 (-)
LOC110496559 LOC106570512 coding downstream 341532 56704852 ~ 56726308 (-)
LOC118941190 LOC106588825 coding downstream 2213996 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 2227918 54827717 ~ 54839922 (-)
LOC110496565 hoxa3ab coding upstream 2860 57073462 ~ 57109628 (-)
LOC110496568 hoxa4aa coding upstream 20185 57090787 ~ 57094267 (-)
LOC110496567 hoxa5aa coding upstream 31624 57102226 ~ 57105455 (-)
LOC110496569 hoxa7aa coding upstream 31624 57101716 ~ 57114109 (-)
LOC110496573 LOC106588846 coding upstream 46866 57117468 ~ 57122355 (-)
G1565715 NA non-coding downstream 10744 57056799 ~ 57057096 (-)
G1565681 NA non-coding downstream 31349 57036254 ~ 57036491 (-)
G1565674 NA non-coding downstream 35134 57032409 ~ 57032706 (-)
G1565671 NA non-coding downstream 36369 57031271 ~ 57031471 (-)
G1565665 NA non-coding downstream 44462 57023161 ~ 57023378 (-)
G1565781 NA non-coding upstream 5526 57076128 ~ 57076570 (-)
G1565789 NA non-coding upstream 36243 57106845 ~ 57107370 (-)
G1565792 NA non-coding upstream 44955 57115557 ~ 57116585 (-)
G1565122 LOC106613431 other downstream 579551 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2402197 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2414990 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3172891 53887137 ~ 53895002 (-)
G1566899 NA other upstream 956909 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1005021 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1096782 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1339897 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1798761 58869363 ~ 58870007 (-)

Expression


Co-expression Network