LOC110496570


Basic Information

Item Value
gene id LOC110496570
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57085681 ~ 57087010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469574.2
TTTTCTGTCAACACTGAGCAGCGGGCGTGGAAATGTTCCACCATAACTATTAATCACGTCAAGCGGACATGGAGCGCATCCCACTCCCACACCACGCCACCCTTTGTCTTCTCAAACTACAACTTGAGCCGTTTAAACTTTTTAAAATCCGAGCAGGAGGGGACCATCTCTTATCAGTTTACCTTTCAGACTACTTTGTGGAAGATTGGGAGTGAGGAGTTCGGCCAGATTTGCATACCACTGCACCAGCTCAGAGTGCACATGCATGGCATGCCGGGGAGCGTCTGTGACTGGAGCTGACGGTGGAGGGAAAACAGACCCTCTCTCCCACGCCGGGTTTCGCCACCGCACCTGAACTTTTTCCTGACCCAAGCCGAGGCCCAGAGAGTCGAGTGTGAAGTTATTTGGGGTCAAAAACAAGGAGAGGATGGAGACTACAAAACCAATTACGAACATAGCTAAACCTCCGTTTTCAGCTGGGAAAGTTTTGGATACTTTTTAGGATGGGTGTTTGTCCTTTTCAGCAGTTTCAAGTTTCAAAGTTTATTCGCCACTGCACAGAATTCAACAGGTGTAAAACCGTACAGTGGAATTCTTGATTTGAGAGCTAGTTCCAATAATCCGTGATAatactatagtaatactataCACTAGTGATAATACTATAGAAAATAACCGAACATATAATACAAAATGCAATCAAGAATAAAAACCACACAAGATGATTAGCCTATTACAGCATTTGGTTAGTTTCTTTGTTTATACTTTTGCTGAGTTATTTCTTCAGATATATCAAACTCCCAACATTCCCCGGCCACCAAGAGGACTTGAGCTGTCGACCTCTCCACACCCTCTGTCTTTGGGTGTTCGCCAGACGGCGgtggctataggctacatatctccCCACAATGTTGACATTTGAAGCTCTTAACAGCGAGCCTTGGGTTACCGATACACTCAGCAGAAGATAACTCTTTCTCAGGGGTTTACATTGACCAACATCAAGGCTAATGCGAAATTCAACGCCTTAAACTGGCTTGGCGTCCAAGCTAAGACAAAGAAGCCTCGGTGGATCTCGACTACACGGACTGACTTCTGTTCTGCTGGTTTGTTTCAGTACGTATTGtagaaataaaattgtattaaTGTT
>TU1791279
CTTCTCAAACTACAACTTGAGCCGTTTAAACTTTTTAAAATCCGAGCAGGAGGGGACCATCTCTTATCAGTTTACCTTTCAGACTACTTTGTGGAAGATTGGGAGTGAGGAGTTCGGCCAGATTTGCATACCACTGCACCAGCTCAGAGTGCACATGCATGGCATGCCGGGGAGCGTCTGTGACTGGAGCTGACGGTGGAGGGAAAACAGACCCTCTCTCCCACGCCGGGTTTCGCCACCGCACCTGAACTTTTTCCTGACCCAAGCCGAGGCCCAGAGAGTCGAGTGTGAAGTTATTTGGGGTCAAAAACAAGGAGAGGATGGAGACTACAAAACCAATTACGAACATAGCTAAACCTCCGTTTTCAGCTGGGAAAGTTTTGGATACTTTTTAGGATGGGTGTTTGTCCTTTTCAGCAGTTTCAAGTTTCAAAGTTTATTCGCCACTGCACAGAATTCAACAGGTGTAAAACCGTACAGTGGAATTCTTGATTTGAGAGCTAGTTCCAATAATCCGTGATAatactatagtaatactataCACTAGTGATAATACTATAGAAAATAACCGAACATATAATACAAAATGCAATCAAGAATAAAAACCACACAAGATGATTAGCCTATTACAGCATTTGGTTAGTTTCTTTGTTTATACTTTTGCTGAGTTATTTCTTCAGATATATCAAACTCCCAACATTCCCCGGCCACCAAGAGGACTTGAGCTGTCGACCTCTCCACACCCTCTGTCTTTGGGTGTTCGCCAGACGGCGgtggctataggctacatatctccCCACAATGTTGACATTTGAAGCTCTTAACAGCGAGCCTTGGGTTACCGATACACTCAGCAGAAGATAACTCTTTCTCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469574.2 False 1150 mRNA 0.44 2 57085681 57087010
TU1791279 True 877 lncRNA 0.44 2 57085788 57086844

Neighbor

gene id symbol gene type direction distance location
LOC110496564 LOC106588844 coding upstream 209663 56861497 ~ 56876018 (+)
LOC110496562 LOC106588845 coding upstream 235854 56845173 ~ 56849827 (+)
LOC110496561 LOC106588843 coding upstream 252192 56821534 ~ 56833489 (+)
LOC110496558 LOC106588839 coding upstream 381577 56569360 ~ 56704104 (+)
LOC110496862 LOC106588838 coding upstream 584090 56028870 ~ 56504444 (+)
LOC110496572 NA coding downstream 1542 57088552 ~ 57099306 (+)
LOC110496571 hoxa7aa coding downstream 22344 57109128 ~ 57112335 (+)
LOC110496577 NA coding downstream 50478 57137204 ~ 57140625 (+)
LOC110496950 LOC106588852 coding downstream 76115 57163125 ~ 57167993 (+)
tax1bp1a LOC106588861 coding downstream 205740 57292750 ~ 57336282 (+)
G1565736 NA non-coding upstream 109 57085186 ~ 57085572 (+)
G1565733 NA non-coding upstream 2668 57082783 ~ 57083013 (+)
G1565726 hoxa3ab non-coding upstream 6552 57078550 ~ 57079129 (+)
G1565728 NA non-coding upstream 16739 57067935 ~ 57068942 (+)
G1565723 NA non-coding upstream 20373 57064976 ~ 57065308 (+)
G1565731 NA non-coding downstream 250 57087260 ~ 57087811 (+)
G1565741 NA non-coding downstream 11532 57098542 ~ 57098866 (+)
G1565744 hoxa5aa non-coding downstream 15399 57102409 ~ 57102795 (+)
G1565746 NA non-coding downstream 19348 57106358 ~ 57106586 (+)
G1565747 NA non-coding downstream 19750 57106760 ~ 57106991 (+)
G1565672 NA other upstream 53718 57031621 ~ 57031963 (+)
G1564638 LOC106607612 other upstream 1033888 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1176747 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1946450 55138648 ~ 55139231 (+)
LOC110496591 LOC106588881 other downstream 764211 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 829605 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 854087 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 1277246 58364256 ~ 58377006 (+)

Expression


Co-expression Network