LOC110496568 (hoxa4aa)


Basic Information

Item Value
gene id LOC110496568
gene name hoxa4aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57090787 ~ 57094267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572543.2
TTCGTGAGGTTGAATATATTTTCAGGTGATGGCTTGAATATTGTTATTTTAGGTCTAGTTGTTTATTTCAGTTGTTTGGCATTGTACTTATTAATAGTATACTATATttatgatgattattattatgcCCTTAGTCTTATGTTGTAGGCCTAATTATTATCTGACATCCACCTCAATAGTTTAAAATGCTGCACAAATGATGGGTGTTTATGTTAGATATTTGAGTAAAGTCAACAACTAACCTAGTAAAGTCAACTAAGTAAGTTATAATCAATCGCAGGCAGTTACTTCTAAAAATGAGTCGTATAGGCCTATCTTTGTGCTTACTGACAAGCTCTTTGTAGATAGGCCGATGCATGTTGATCACTTACTTTTGTATTGAGTTGCTTTTCATTTCAACACAAGTGTTCACTTCTCATCTACTAACATCATTGCAAATTCGCAACCGGTTATTTTGGCCTTCTTTTGGCCTTCTTTTAAGATACCATCTTGTATATGATGAGCCAAATATAAACTATTTGATGATACAATTAAAATGCAGAGTTATCATAGGTTTAAGTGACAATGTGTACCGCAGAGCCGCGTAACTGCGCCCAGGCAATGTTTTATCTTTGCttcgctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcacaaaTCAAGTTAAATATTTGCCTTCCTCGATTGTGCGTGCACATAATCTGTCACTCTCTAGTCTTCAGTTCACGATCAATATCAGTATCTATGTAAACACGTTTCCATTTAATTTAGTTCATCACCATCAGTAAAATGTTACAATACAGATTTACATTTTACGAACGGAATTACCAACTGATAATTGACTAGAAAGGAAAGCATCTTGGAAAGGAGTGGATTGGAAAGGCGCTCCAATGTCATCTTTGACAGAAAATAAGACACGTACAGTTTGCTTGTTTCCAAAGAGCCCATCCTTTTCCTGGGCAACAGTATGAGATacccaacatcatcatcatcatcctcctcctcatcatctcctCAAGGCCGTGGTCTACTGTGGGTTACTGCTAAATAAAGGGGTTACTTACTCTAGTTGAGTCAATGTGGTAAACAACTGCCTTGATACTTTTTTCTTTATCTATTTTGATTAAATAAGGAAATCACCAACGTAGGCTACTGAGACATTTTCGTTGTGCCAATGCCAGGCTTTCCATTGGTTCCTGTTTACATGATGCCCACAGGAGACGCGGTGATTGGTGGCGGTTTACACGTGACCAGACAACTTTGTACACTTGACAGAGAGTAGGAGGGTTTTGTGGAGATCAGAATAACGACAGAGCGATAAAAATTAGTATTGTTGCACTTCACAAATTAATGATCATGAGTTCATACTTGATAAACTCGAACTATATCGAACCTTCCTTTCCTCCATGCGACGAATATCAACAGAACGGATACATCCCCGCCCCTACTGAGTACTACGAACGGCCAAAAGATTCGGGCTTTCCCCATCACGACGAGGCGTCCTATCCGAGGTCAAACTACACAGAACCGAGCTACGACTACGGTAATGTCCCTAACAACGGTCTCGACGATTTCACCGACAGGCATCACGCACAGGCTCACCCCGTTGCCCAGAACCATGCCCCTCGCCTCAACCCAGTCCCAGACAGCGGTGCCGTGGCGGACGTGAGCAAAGACTGCAGCCTCGCCACTGAGTCTTATTCCAGCGCACAGAAGGGAAAGGAAGTGCCGGTGGTCTACCCCTGGATGAAGAAGGTCCATGTTGTCAATGCTACTTACAATGGAGGAGTGCCCAAGAGGTCTCGCACTGCCTACACCCGCCAGCAGGCTCTCGAGCTGGAGAAAGAATTCCACTTCAACCGCTACCTGACCCGACGCAGGCGCGTGGAGATCGCGCACACGATGTGCCTGACCGAACGTCAGGTGAAGATCTGGTTCCAGAACAGAAGAATGAAGTGGAAGAAAGATCACAAGCTGCCGAACACAAAGATCCGCTCCGCAAGCTCAGCCTCGTCCTTGGGagcacagcagcagcaacaacagaaaATCAAAACAGCCACGCACCAGCAGCTTGTTCCCACGCCTTGCACCGCGAGCCTATAGTGATGGAATCCTCGCGCCAAACCAACAGACTGAGAACAGAACACAGAAACTGAATTTTGTGGCCCGATTCTCGAGTATGGCCCCCATGGTATTACCCCATTCCCTTGGCCCTTGGGCCTGTCGCGTCCTTTCAAAACCATTTCCCCTCTCAACCTCCTCTTTCTGTTTGTTCACTCTCTCCTCATTATTGAGCTCGAAATCCGCCACGTACTGCCCAAGATGGCAACTGAAATGTATGTACTTGTTTATTAAGACAGAAGGTTAACGCACATTCAAATGCACCACAGGACCTTGGATTATATGTATCATTGCATAGAATAAAAAGAAAGATAATGAGACGAGATATGTGAGGACgcgtttttctttttcttctatgCAATGTTTTTGTTTATTCTCGTGGAAAGTTTTAATATACTTGAAAGAATGACAATGTTTTAGGAAAGCTCGAGTGCCCGGTCTGAGACCTATCACGAGGTTTAGAACGGGACAGGGTAGTAGTTAGGGTTAAGCTCGTGATGTGTGAATGAGTTGGTTTACTGTTGAATGTGTTATTAAGTCGTGTAATGTCCAGGTGACTTTCACCCCTAATGTACATAGACAAATCATAGCGAAGGCACAATACTGAATCCATTTTGTCGGCTAAAAAAAGACAACCTCGTTTGTTTGTTCGTGTAGTAGTGTAGACTCGTTTCATCTGTGATAGTGTGTCCCTATTTTGTGGTGTGATCTAAACTGTGAATATTTGTATATGTTGTTTGATCAATGAacggtgtaataatgtattgtagtttAGGCACATGCAAGAAACGTTTCCCGTGAAATAAATATGTACTTCAATTGTA

Function

NR:

description
homeobox protein Hox-A4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572543.2 True 2948 mRNA 0.43 2 57090787 57094267

Neighbor

gene id symbol gene type direction distance location
LOC110496566 hoxa2ab coding downstream 20185 57067840 ~ 57070602 (-)
LOC110496863 NA coding downstream 29758 57058537 ~ 57061029 (-)
LOC110496560 LOC106588840 coding downstream 353406 56728341 ~ 56737381 (-)
LOC110496559 LOC106570512 coding downstream 364479 56704852 ~ 56726308 (-)
LOC118941190 LOC106588825 coding downstream 2236943 54842434 ~ 54853844 (-)
LOC110496567 hoxa5aa coding upstream 7959 57102226 ~ 57105455 (-)
LOC110496569 hoxa7aa coding upstream 7959 57101716 ~ 57114109 (-)
LOC110496573 LOC106588846 coding upstream 23201 57117468 ~ 57122355 (-)
LOC110496574 hoxa10ab coding upstream 29860 57124127 ~ 57130231 (-)
LOC110496576 hoxa11ab coding upstream 37198 57131465 ~ 57134795 (-)
G1565781 NA non-coding downstream 14217 57076128 ~ 57076570 (-)
LOC110496565 hoxa3ab non-coding downstream 16782 57073462 ~ 57109628 (-)
G1565715 NA non-coding downstream 33691 57056799 ~ 57057096 (-)
G1565681 NA non-coding downstream 54296 57036254 ~ 57036491 (-)
G1565789 NA non-coding upstream 12578 57106845 ~ 57107370 (-)
G1565792 NA non-coding upstream 21290 57115557 ~ 57116585 (-)
G1565795 NA non-coding upstream 35210 57129477 ~ 57129703 (-)
G1565797 NA non-coding upstream 36594 57130861 ~ 57131087 (-)
G1565122 LOC106613431 other downstream 602498 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2425144 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2437937 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3195838 53887137 ~ 53895002 (-)
G1566899 NA other upstream 933244 58027511 ~ 58027790 (-)
G1566923 NA other upstream 981356 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1073117 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1316232 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1775096 58869363 ~ 58870007 (-)

Expression


Co-expression Network