LOC110496567 (hoxa5aa)


Basic Information

Item Value
gene id LOC110496567
gene name hoxa5aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57102226 ~ 57105455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572541.2
ACAACATGTGTTTAAATTATGACATGTGTTTAGATTACAACATGTGTTTAAATTATGACATGTGTTTAAATTATGACATGTGTTTAAATTATGACATGTGTAAATTATGACATGTGTTTAGATTACAACATGTGTTTAAATTATGACATGTGTAAATTATGACATGTGTAAATTATGACATGTGTTTACATTACAATATGTTCTGAAAATGGACTTTAGTTATCCATATTTGCAAAAAAACGGAAGCAAAATGTATATTATTGTTATGCCATTCATGTTTTCTAGAGATGAGGCTATTCATTACACACAGCTGCAAGAttttatgcagatttttttttgtgcCTAATTATCTAATTATCATAATTCAGTCATAATTTGTTGATCAAAACCTGGGTTATTTTCATTCAGACTTCTAAAAGTATTTATGGAATTTCACTTGAGGGGTGAAGTGTTGTCTATTGAGACTACTGTATTGTAGCCTACTTTCTGTCGTCATCTAAAATAAATGTACGTTGTTTCAAATGCCACATTTTTTGCGTATCTAACATTTAGATGACTGCCTTTCTATTAGATTGGATCATAACTGCAGGTTGTGACGGCTCTATGCATATCAGTAAACTAAGCTTCACCTGTAAAATTATTCTTAGTGATAAACACATTTGCAATTTATTCAAATGTCCAAAGAGTTGATTCATATAGGATATTCCAACATGGTTTAACGAAATATTTAACCAAATTTAAGGTTctagacaaatatttttttatatattttttttcttgtaCTTGTTTTTTCTTGTAGTGTACGTGTTTTATTCCCAACGCGACGGTTAATGAGGATAACATTGAATACAGAtttctctctatactctctatcAGTGGAGAGGTTGCATATTCAGTATACACTGCGTTTCTTGTTGTATTGTTTGGGGAGACCATGCTTTTGCCGCAATGGTCGTTAACCTCTGAACGACCCCGTTCGGAGCCCACGCCTCAAACACTGTCGCAGGCAGTGCCAGACTGCGACCAGAAGATGGCGCGCGACGACAATCCAAGAGACGCAACCCGGGCCCCGCGAGCGCCCTGCCTAGGCGCATACCCAGGCGCGCCTCCCTAACATCCCACCAAGATTTCCTATTTGTGCACGAGTTTACCTCTGGAGGTCATCAAGCAGGATTTACGACTGGTCAACAAAAGCACGTGATTCTCAGCCGTACCCCATATTTGGGTGCCTACGTAAGAGAGAATCAAGTACATGTTCTACTCATTTCCATAATTCATCATAAATTGTGCAAGGGTGCTATAGAACGCGCAAAACCATCAAGAGCCACAAATCAAGTACACACGTTATTACTTTCTCCACAAAAAAAGCAACAAATACCTGCTAAACAACAATATTGGAATTATCAACCAATGAGCTCCTATTTTGTAAACTCATTCTGCGGTCGCTATCCCAATGGCGCGGATTTCCAGTTACATAATTATGGAGACCACAGCTCTGCAAACGAGCAATACAGGGACCCCACGACCATGCATTCCAGCAGGTACGGTTATGGCTACAACGGGATGGACCTCACTGTCAGTCGCGGTAACGGGCACTTTATGGCCAGCGTGCGGGCACAGGGCTACTCCCCGAACCAGTCGGTGGCGACAACAACGTCCTCGGTCGAGACGCCCAGGTACACCCAGCCCGCGAGTGCCACCGAGACGACGTCCCTCTCGCCTCCACCTGACCCGCTCCCGTGCTCCTCCTCTGTCGCGAGCTGCTCGTCTCCGGTCAGCGAGTCTCAACCTCAACACCGAGACATAAAGAACTCCATAACGAGCCCCTGCACGACCCCGAGTTCGAATGGAGGCACGCTGTTGAACCGGGTGTGTGTGTCCAAAGCGTCCCCCCTCCAGGAAGAGAAGCCCGCGGGAAGGGCGCAGACAACTTCCCAAAATGTCACCGACGGTGCCCAGCCCCATATTTACCCCTGGATGAGGAAACTGCACATAAATCATGACAGTCTGACCGGACCAGAGGGGAAGAGGGCGAGGACAGCCTACACGCGTTACCAGACACTGGAGCTCGAGAAAGAGTTTCACTTCAACCGTTATCTGACCCGCAGACGGAGGATCGAGATAGCGCACGCGCTCTGCCTATCAGAACGCCAGATCAAAATCTGGTTCCAGAACCGGAGGATGAAGTGGAAAAAGGACAACAAACTAAAAAGCATGAGCATGGCAGCGGCAGGGGGTATAGGTTACCACCATCCCTGATACTCGGTTCCCCGATGAGCactaataaaataatacaaaGCTTAGGAAAACTTCCCATCATGTCAAAAGCCCAAGAGACTTTCCGAGGGCTTCTTAGGACAGTGAACATCCACGTGTCCATGCAAGCTCCAGCCTTTAAAAATAATTTCCtccttatttattttattttgaccaTGATAATGCTTGTGTGAGTAAAAACTTGCGTTCTGTAAATGTTTGTCTTAAAGGAACAACCAATGGGAAATACATGTTTGTTTAACTTATTTCTTGTTCAAAATTGAAAAAACTTTAAAGTTACCACAAATAAGTCTATTAACTATCCAA

Function

NR:

description
homeobox protein Hox-A5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572541.2 True 2583 mRNA 0.43 2 57102226 57105455

Neighbor

gene id symbol gene type direction distance location
LOC110496568 hoxa4aa coding downstream 7959 57090787 ~ 57094267 (-)
LOC110496566 hoxa2ab coding downstream 31624 57067840 ~ 57070602 (-)
LOC110496863 NA coding downstream 41197 57058537 ~ 57061029 (-)
LOC110496560 LOC106588840 coding downstream 364845 56728341 ~ 56737381 (-)
LOC110496559 LOC106570512 coding downstream 375918 56704852 ~ 56726308 (-)
LOC110496573 LOC106588846 coding upstream 12013 57117468 ~ 57122355 (-)
LOC110496574 hoxa10ab coding upstream 18672 57124127 ~ 57130231 (-)
LOC110496576 hoxa11ab coding upstream 26010 57131465 ~ 57134795 (-)
LOC110496578 hoxa13 coding upstream 40694 57146149 ~ 57148279 (-)
LOC110496951 NA coding upstream 173611 57279066 ~ 57284390 (-)
G1565781 NA non-coding downstream 25656 57076128 ~ 57076570 (-)
LOC110496565 hoxa3ab non-coding downstream 28221 57073462 ~ 57109628 (-)
G1565715 NA non-coding downstream 45130 57056799 ~ 57057096 (-)
G1565681 NA non-coding downstream 65735 57036254 ~ 57036491 (-)
G1565789 NA non-coding upstream 1390 57106845 ~ 57107370 (-)
G1565792 NA non-coding upstream 10102 57115557 ~ 57116585 (-)
G1565795 NA non-coding upstream 24022 57129477 ~ 57129703 (-)
G1565797 NA non-coding upstream 25406 57130861 ~ 57131087 (-)
G1565803 NA non-coding upstream 35662 57141117 ~ 57142923 (-)
G1565122 LOC106613431 other downstream 613937 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2436583 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2449376 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3207277 53887137 ~ 53895002 (-)
G1566899 NA other upstream 922056 58027511 ~ 58027790 (-)
G1566923 NA other upstream 970168 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1061929 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1305044 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1763908 58869363 ~ 58870007 (-)

Expression


Co-expression Network