LOC110496571 (hoxa7aa)


Basic Information

Item Value
gene id LOC110496571
gene name hoxa7aa
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57109128 ~ 57112335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469576.2
GACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTAATcaattaataaataaaaacatgttgtGCCTGTGa
>TU1791303
CGGACATAACCCGTttaaccctacaacacaacattccAACCACTCTTCTGAAAGGCATCGCTATTTAAAACTAAACAAGCATAGAACGTTGTTTTTACTTGAATGCTCACTCTATTATGATTTTGCATGATTACAAAATCATATCCAATCATGATAAGCAAGTAGTATTCTTACCGTATTGTGAGACGTTCGGGTCTCATGGTGTGTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGTAATGAATCCAAACCGTCCGGTTCCATGAGAAGGGAACTGCTCCTTGCACTGCGTGTTAAACAACAACTAAAAAGCAAAACAGCGTTACCCACGACGAAAAGAAATGGAAGAGCGAAAGCTTTTACGTTACAGAAAGGGTTGGATGGCAGACACAGGCTTTTAAATGAGTGCGGTTCTATTCTGGAAAAGGAAATTATGTATAAAAAGTTCATGTTCACGGCTCCATGCCATATGACCAGCGGCGACCAATGGGGAGCCGAGGAGCCTCGTAAAGTTGCATTGCAATGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCAGTGAGAGAgcgacaggaggagagaggggaagaaacagagagggagaggacgggGCAGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTA
>TU1791305
CGGACATAACCCGTttaaccctacaacacaacattccAACCACTCTTCTGAAAGGCATCGCTATTTAAAACTAAACAAGCATAGAACGTTGTTTTTACTTGAATGCTCACTCTATTATGATTTTGCATGATTACAAAATCATATCCAATCATGATAAGCAAGTAGTATTCTTACCGTATTGTGAGACGTTCGGGTCTCATGGTGTGTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGTAATGAATCCAAACCGTCCGGTTCCATGAGAAGGGAACTGCTCCTTGCACTGCGTGTTAAACAACAACTAAAAAGCAAAACAGCGTTACCCACGACGAAAAGAAATGGAAGAGCGAAAGCTTTTACGTTACAGAAAGGGTTGGATGGCAGACACAGGCTTTTAAATGAGTGCGGTTCTATTCTGGAAAAGGAAATTATGTATAAAAAGTTCATGTTCACGGCTCCATGCCATATGACCAGCGGCGACCAATGGGGAGCCGAGGAGCCTCGTAAAGTTGCATTGCAATGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCAGTGAGAGAgcgacaggaggagagaggggaagaaacagagagggagaggacgggGCAGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTAATcaattaataaataaaaacatgttgtGCCTGTGacattgttactaagatgtcTTTCTCAAAATGACAGTCAATGATGTTTTGCCTCATGTAGCCTA
>TU1791307
CGGACATAACCCGTttaaccctacaacacaacattccAACCACTCTTCTGAAAGGCATCGCTATTTAAAACTAAACAAGCATAGAACGTTGTTTTTACTTGAATGCTCACTCTATTATGATTTTGCATGATTACAAAATCATATCCAATCATGATAAGCAAGTAGTATTCTTACCGTATTGTGAGACGTTCGGGTCTCATGGTGTGTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGTAATGAATCCAAACCGTCCGGTTCCATGAGAAGGGAACTGCTCCTTGCACTGCGTGTTAAACAACAACTAAAAAGCAAAACAGCGTTACCCACGACGAAAAGAAATGGAAGAGCGAAAGCTTTTACGTTACAGAAAGGGTTGGATGGCAGACACAGGCTTTTAAATGAGTGCGGTTCTATTCTGGAAAAGGAAATTATGTATAAAAAGTTCATGTTCACGGCTCCATGCCATATGACCAGCGGCGACCAATGGGGAGCCGAGGAGCCTCGTAAAGTTGCATTGCAATGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCAGTGAGAGAgcgacaggaggagagaggggaagaaacagagagggagaggacgggGCAGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTAATcaattaataaataaaaacatgttgtGCCTGTGacattgttactaagatgtcTTTCTCAAAATGACAGTCAATGATGTTTTGCCTCATGTAGCCTATATACACTTCAATAAAcgttatttttttaaagacttCCTTCCATTAAAAATATTCCAGCTGGGATTCTAGCCTGTAGCCTATAGCTAATGCACTGCATGCCTCTCCAATTAGAAGCATGTGCTTGTCCACCACTTCTAGGTCATACCCACATAGCCCTTAAGCAATTACTACTGCTACTTTCATTGGTAGGGTATATCTTTATTAAACACTGGCTTGCCTACCAATTCCCTACTAGCCAGAAACTATACTATTAATAGGCTACCACTGCTCCAAC
>TU1791310
CGGACATAACCCGTttaaccctacaacacaacattccAACCACTCTTCTGAAAGGCATCGCTATTTAAAACTAAACAAGCATAGAACGTTGTTTTTACTTGAATGCTCACTCTATTATGATTTTGCATGATTACAAAATCATATCCAATCATGATAAGCAAGTAGTATTCTTACCGTATTGTGAGACGTTCGGGTCTCATGGTGTGTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAA
>TU1791300
GTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAA
>TU1791304
GTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTA
>TU1791308
GTGGTGATGTCACAGGGAGAGGACGGACAAGTGCTGCTGGCGCAAAGCGACCAGATCCCCTGTTCTGACAGCTGGATCCTGGACAAATCCAAACGCTCCCGGGATCAGGCAACGACGCACTCAACCCGTCCAATGTGCCAAACCGTCACGAGGACCCCGGTAATGAATCCAAACCGTCCGGTTCCATGAGAAGGGAACTGCTCCTTGCACTGCGTGTTAAACAACAACTAAAAAGCAAAACAGCGTTACCCACGACGAAAAGAAATGGAAGAGCGAAAGCTTTTACGTTACAGAAAGGGTTGGATGGCAGACACAGGCTTTTAAATGAGTGCGGTTCTATTCTGGAAAAGGAAATTATGTATAAAAAGTTCATGTTCACGGCTCCATGCCATATGACCAGCGGCGACCAATGGGGAGCCGAGGAGCCTCGTAAAGTTGCATTGCAATGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCAGTGAGAGAgcgacaggaggagagaggggaagaaacagagagggagaggacgggGCAGGGGTTTCTGACGCAACACGGGTGGACTGAGAATCTCCGTCCTCGGCGTCCTCGGCCTTGGACTGTCCGTCGGTTACCGGATCACTGTCATCATCCTCGTTTACGTCCTCGCTGGTGGCACCGGGGGTCGAGCTCGAGGACTCGTCCTTGTGATCTTTCTTCCATTTCATCCTCCGGTTCTGGAACCATATTTTGATTTGGCGCTCGGTCAGGCAGAGCACTTGTGCTATCTCCACGCGCCTACGACGGGTCAGGTACCGGTTGAAGTGGAATTCTTTCTCCATCTCCAGTGTCTGGTACCGGGAGTAGGTCTGACGTCCACGCTTTCGGTTTGGATCTACAAGAGAAAAGGGTTTCAATCTGCTAGGTCCAATAATAAAAATACTACAACACTAAAACCATGTTCTACACAAGCATGGCATATGTAATAACTCTGATGATATCATGATATTGATAATGACATATGTGACAATTCTGTAATTTTGCATTCATGTATTATTTCTATAGAAGTTA

Function

NR:

description
homeobox protein Hox-A7-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469576.2 False 685 mRNA 0.49 2 57109354 57111998
TU1791303 False 1260 lncRNA 0.47 2 57109128 57111963
TU1791305 False 1357 lncRNA 0.46 2 57109128 57112060
TU1791307 False 1632 lncRNA 0.45 2 57109128 57112335
TU1791310 False 753 TUCP 0.50 2 57109128 57111840
TU1791300 False 548 TUCP 0.55 2 57109333 57111840
TU1791304 False 671 TUCP 0.50 2 57109333 57111963
TU1791308 True 1055 lncRNA 0.49 2 57109333 57111963

Neighbor

gene id symbol gene type direction distance location
LOC110496572 NA coding upstream 10048 57088552 ~ 57099306 (+)
LOC110496570 NA coding upstream 22344 57085681 ~ 57087010 (+)
LOC110496564 LOC106588844 coding upstream 233336 56861497 ~ 56876018 (+)
LOC110496562 LOC106588845 coding upstream 259527 56845173 ~ 56849827 (+)
LOC110496561 LOC106588843 coding upstream 275865 56821534 ~ 56833489 (+)
LOC110496577 NA coding downstream 25490 57137204 ~ 57140625 (+)
LOC110496950 LOC106588852 coding downstream 51127 57163125 ~ 57167993 (+)
tax1bp1a LOC106588861 coding downstream 180752 57292750 ~ 57336282 (+)
LOC110496864 LOC106588860 coding downstream 278773 57390771 ~ 57420005 (+)
LOC110496582 LOC106588858 coding downstream 329379 57441377 ~ 57476399 (+)
G1565747 NA non-coding upstream 2363 57106760 ~ 57106991 (+)
G1565746 NA non-coding upstream 2768 57106358 ~ 57106586 (+)
G1565744 hoxa5aa non-coding upstream 6559 57102409 ~ 57102795 (+)
G1565741 NA non-coding upstream 10488 57098542 ~ 57098866 (+)
G1565731 NA non-coding upstream 21543 57087260 ~ 57087811 (+)
G1565752 NA non-coding downstream 2902 57114900 ~ 57115405 (+)
G1565753 NA non-coding downstream 4641 57116639 ~ 57116947 (+)
G1565756 hoxa10ab non-coding downstream 12154 57124152 ~ 57125142 (+)
G1565760 NA non-coding downstream 18293 57130291 ~ 57130610 (+)
G1565672 NA other upstream 77391 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 940151 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1057561 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1200420 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1970123 55138648 ~ 55139231 (+)
LOC110496591 LOC106588881 other downstream 739223 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 804617 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 829099 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 1252258 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1758901 58864013 ~ 58873692 (+)

Expression


Co-expression Network