LOC110496573 (LOC106588846)


Basic Information

Item Value
gene id LOC110496573
gene name LOC106588846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57117468 ~ 57122355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572545.2
ggTTCGACACAATGTCTGTAAAGTGTTACGCAGGCGTTTCCTCTCTTCCTACTAGTCCATATAGTATCATATGTTGTGTCCAGACTTGGGGTGCACGTTCAGTAGCTTCTCACCTGCTCTTGAATTACCCCACATGTATTAGTTACCCCACATGTATTAGTTACCCCACATGTATTAGTTACCCCACGTGTATTAGTTTGTGTTGTTGCTTATCCATTCAAAAGATACACCTGAAAATCAAATGCATATATAGTGTAGGCTTGACTATAATTTCCAGCGTCTTGGTTTATATttcgtgtttcaagttttaatgtcacatgcacaattacagtgaaatgccattcttgcaagctctaacctcaacaatgcagtaatcaataacaatgtaatactaaaaataacatgaggtagacccaaaacacacaagaaataaaaataagaaatgaGAAGTATACGCGAAAGTAAGTCCgcgtactatatacagggtcagtcagttccaatgccatatttacaatgtgcagggatactgcagtggtagaggtagatatgtaggcaggcctataggggtaaggtgactaggcatcaggatgtatgatgaacagagtagcagcagcgtgtatTATGATTGTATGTCAAcgggtgtgtgtagagtcagtataaatgtatgttattatgtgtgtgtgaacaaatgatggagtgagtgtttgtgtgtgtgtgtgttggattgtcagtgtgcgtgagtgagtgtgtagtgagtgtgcatagagactttgcaaaaataaaatacaagggtcaactcagataATCATTGTAGTCATTTTGCTAGctatttagttagctatttattactcttatggcttggggatagaagctgttcgggagcctgttggtgtcagaatTGATGCACCCGTGCGGAAGCCAAGAggacagtctatggcttgggtggctggagatTGAACATGTGTTAGATTTCTGCTATCAAATTTGATTACAACGTGATCTATGTGTCTGAATGACATAAACAACCCCATTTGTAAACTATCTAGTGCCTATCTATTATCTATTAGTTGCATGTAAATGTCACGACGTAGGCCAatctccattttttttttgtatggaAACTCTTAAACTTCTAAGTGATTTAGTAGTTTACATAATGCTATCTTTGTTATAATTTTCTACTTAATAGTGCATTGTTGTTTTCGTTAGCCACGGCGGATTTCATAATTGGCTCGATAATGCTGATATTTGTAATAGTGCTTGTGTTTCTTATGATAGTGGTCTCTCATAATAGGTTAATAACATTCCTAGTAATAATAGGATAATGTATTTAATAGGATAATGTATTTAAAAAAGAAGCCAGGTATCGATTGACATGCTACTATGTGCACACTATTTTCTACGACGAGTTTTCATAATTGTCGTTTATTTGTTTTAGCTGAATGATTTAAATATGCCACAACTAGGCCATGCTTTTATGCTTCACCATTAGGCTATTGAGATACATGAATAAacatgtatgttttttttctgtaGGCTCAATATAAAAGTTGTTTAATTCCTCAGTTCTGTTTAATAACCAGAATACGTTTTTATCTTGTCCATGGATATACGAATATAATATTAGCCTAGGACAATAACATGATTTTTttccaaatgtattttttttaagacGTCAGTAAATTAACGAACATATTAGGGTTCTATAGCTGTGAGTAAATGGGCCTACTATGCAAACACAAATACAATTCTATACTAATTTCCATTTTCATACTCAAAATAATCTTACATTTActgaaataatgttttttttcttccggTAGCTGATATATAAACAATATCATAGGATGTTAAGGAAATAACAAATGAAACTAGTCAGATATTATTCTCAGCAGGGTTTTAGTCCGATTAGTCATTAATCTGATACTATATTATTATTGTATAATACCAAACTAATATGTTAATAGGCTATACAAAATAGCACGATATAGCACAACATTATGTGCTTATCTTTAAACCGTTTTTTCTTCGGGAATGTTTGCTCATAACTTTCTCTGGTTCGAAGACAATGAAAATATGAAAGGTTGAAACATTTTGACGGAAGATGAAAGAGGTTACATACTAGGATGGAAAGCGTCCCAAAGCATTAGTTTTAAGGAATAATATGTACATAATTTACCTTCTTTTGCGCCATAGAAAGAATGCAATTTCAGACATTTGGTTTTGTTAATAAGCCCCAATATGGAGAAGTTATTCTGGTTAATTTCAGCcactgtgtgttttgttgtgagtATCATTGGTAATGCTTATTACCCTGTAACGTATGTGTAGATATCCCTCGTTAAATGTGTGTTTTACCTAATTTGGGAGGATAATTTGGGGGATTTACTGACCTACGCTAACAGGGACAGATACTTTCAATGGCATTTTTCAATTGTATTTTTCTCAATGGAGTTCAGCCTCTCCCTTGTCACGGCCCAACATTTATATCAGAAATTGCGTACTAatcatataaaataataataatttgcttTTAAAACTAGACTTTGTCAGGTTTTAAGACAAGAGACCCGCAAGCATTTAATAGTCAAAGGGATTGATTTATTATTTATTGTTCAGCCTTTGTGATCACGTGCGCGCATCACCCAATCGAATGGCAGCCCTGCGTCCGAACTATTAGTAGACTGTAGTTCTTTGTGGTGCCAAGTTGCTACTTGATTTCTTCAGATTTTTATTTTGTGAGAGTGGGGTttagtgcgtgtgtatgtgtgtgtggtgtgtgtgtcgcGCTTGTATTTGTAAGTATCAGTGTATGTGTGCGTACATGTGAAAGTCTCTTTTGCCATGTCGACATCTGGAACGTTGACTAGCTACTACGTCGACTCCCTCATCTTGCCTGAGAGTGAGGCGCTCTCCGCGCCCAGATACTCCTCCGGTCCGGGGGGGCTCCAGCACGCGAGGCAGCCCACATCGATCACCGATCACACTGAGCTTGGGCCCTGCACCTTCCCGACGAAAGCCCCGGTCTTCAGCCCGTCCTGGGGCCATGTACCGACCCAGTTTCCAGCCGCCGTGTCGTCGGTGTACCACCACCCTTACGGGAATCACCGAAGTCCGGCTCCAGGCGACCTGGAGGGTCGCTACATGCAGTCCTGGCTGCTGGAGCCCATGTCAGGGTCCTTGCCTTTAACTGGATTACCAACGAGTCACCACTACGGGATCAAATCCGAGAGCCTGGATTCGGGAGCGGACAGCGTGCTGCCTGGATCCCACACCGCGCTGCTCCTGTCCGATTTCGCCGACGGAACGGCGGTGACTGCATCCCAGGTGGACAAGGACACACTACCAGGCCAGACCGGGGACCTGAACGAGGAGAAACCGGTCCTTGATCCAAATAACCCGGTATCCAACTGGCTCCACGCTAGCGCCACGAGAAAAAAGCGCTGTCCATACACCAAGCACCAGATCCTCGAGCTGGAGAAAGAGTTCCTCTTTAACACGTACCTCACGCGGGACCGTAGGTATGAGGTCGCGAGGCAGCTCAACCTTACGGAGAGACAAGTCAAAATCTGGTTTCAGAACCGCAGAATGAAGATGAAGAAATGTAATAAAGATGGTGGACCAAAAGATGATTTATAGGTATGATTGATTGAATGAGAACGTAAAAACATATCCGAAATAAGGGGGATATCTGTGAAAAGGCTCTTTCTCTGCTGGACTGCATTTTTATAGTCGTTGTTTCATTGTTTTATCCCTAACAGAAGCTGTTATGTGTCTTGTAAAAAGCATGTCCGGCTCTACTCGTCGGTTTGATGCAACTAACTACCTTTATATTGCACAATTTAGCAGTGCGCATTAttttttgttattgttattagGATGTTAATGACTGAATTATAGCCTCGGCTGTGAGGGCATCTGTGTAAGGCATGTACCCTATTAATAGGCCTGTTCTCTGTGCTCGTTTGTGTGTGGATGTGAGTAgctatgtgtgtgttctctggtttGTAGATATAGGCCTATGTGTATTTCAGGTTAAACTGAATTtagtttcaaatgtttttttgttgtcgtTATTTCAACTATTGGTCGATTTGAGTTGGAGGGATAGGCTAAGGTAATGGTGGCATTTTGAAGCGGGTGCATGAGCATCAAAAAGCCTCTTTAAAATGCATATTGGCCTGTTGATAATGTTACTAGAAGCTACATACAATGATATTGTCTCTCAACTACCTATAATTGCAAGAACCTAATTTCATTTTAACATGACTTTTCGTTGTGAAGAGACAGAATGCTTGTATAGATCGTAAACTATGTCTGAATTTCAGGGAGTAACATTTGAGAGGACATATTTGttagaaaggagagagactaAATAAACAGAAACACTGTATGCTACCTAATGAATACCTCATGGTCTGGGGACTTTCAGATTTTTGGTTCTCAAATGTAATTTCTACTATTTATTGAATAAAACAAATTATATCTGCGAATGCA

Function

NR:

description
homeobox protein Hox-A9-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K21950 HOXA9; homeobox protein Hox-A9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572545.2 True 4497 mRNA 0.40 2 57117468 57122355

Neighbor

gene id symbol gene type direction distance location
LOC110496569 hoxa7aa coding downstream 3359 57101716 ~ 57114109 (-)
LOC110496565 hoxa3ab coding downstream 7840 57073462 ~ 57109628 (-)
LOC110496567 hoxa5aa coding downstream 12013 57102226 ~ 57105455 (-)
LOC110496568 hoxa4aa coding downstream 23201 57090787 ~ 57094267 (-)
LOC110496566 hoxa2ab coding downstream 46866 57067840 ~ 57070602 (-)
LOC110496574 hoxa10ab coding upstream 1772 57124127 ~ 57130231 (-)
LOC110496576 hoxa11ab coding upstream 9110 57131465 ~ 57134795 (-)
LOC110496578 hoxa13 coding upstream 23794 57146149 ~ 57148279 (-)
LOC110496951 NA coding upstream 156711 57279066 ~ 57284390 (-)
LOC110496580 LOC106588863 coding upstream 213987 57336342 ~ 57373792 (-)
G1565792 NA non-coding downstream 883 57115557 ~ 57116585 (-)
G1565789 NA non-coding downstream 10098 57106845 ~ 57107370 (-)
G1565781 NA non-coding downstream 40898 57076128 ~ 57076570 (-)
G1565795 NA non-coding upstream 7122 57129477 ~ 57129703 (-)
G1565797 NA non-coding upstream 8506 57130861 ~ 57131087 (-)
G1565803 NA non-coding upstream 18762 57141117 ~ 57142923 (-)
G1565819 NA non-coding upstream 41194 57163549 ~ 57163778 (-)
G1565825 NA non-coding upstream 45427 57167782 ~ 57168087 (-)
LOC110496560 LOC106588840 other downstream 380121 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 629179 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2451825 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2464618 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3222519 53887137 ~ 53895002 (-)
G1566899 NA other upstream 905156 58027511 ~ 58027790 (-)
G1566923 NA other upstream 953268 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1045029 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1288144 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1747008 58869363 ~ 58870007 (-)

Expression


Co-expression Network