LOC110496574 (hoxa10ab)


Basic Information

Item Value
gene id LOC110496574
gene name hoxa10ab
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57124127 ~ 57130231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572546.2
AGAGCGACGATTGAGGAGAGGACGGATAAGAAAAGCCTCTGCTCACTGGGTGCTTCGACTTCATTTGAGAGTGCATTTCCCCCATTGCAGGTTGTCCTTCTTGGATCAGAGTAGTGGCCATGGCCTGGTGCTCATTCGCAGACGCTTCCTCCTGCCACCGGGCGGCGCTGTTGAGATCAAAGTCATTGCCGTGGATCTTTTCATCTGCAAGAAGAACCCAGCGTAATAAACCTTCAAGATTCTCGAGGGAAACTTGAAACGCAGATGGACACCACAGGGTGAAAACCGAGCCGGGAGGCCACAAGCCACCTGGTCCTGGTAATGGTCAAAGCTGTCCGATATTAACTTCAACCTGGGGATGGAGAGAAGGCGCAGCACACCATGGACGCAACAAAATGGAGGGATACCAATTGTGTCCCTATAATACCCCTAAAAGGGAAAGGGAATAACCTAAGCAAACCCATGATGGATATGGTCCCGGTTGCTACGTGGCTCTGGAAGGGGAGGGGCTCTGCGTATCCGAGCGTTCCTATTGGCTCCAGAGTCTGCACGGTGGAGAGGGGGGTACCTCTAATCATATCCAGCATGTTTTGCACAAGAAATGTCAACCAGAAAGGGCTATCTTCTCCCCTCGCCAAAATACACCACAATAATGGCATGCTCGGACAGCCCCGCAGGAAACGCGTTTTTTGTGGATTCTCTGATCAGCGGCCGGACCGAGGGTGGAGGGGGACACTACTACCCGGGCAGCAGCGTGTGTCTGCCCCATAACGCCGCATCAGAGGTGTCTTACGGGCTACAGAACTGTGGATACTTCCCAGGTATAGGCAAGCGGAGCGACGCAGGTCCCCAAAACATGTCTGCCGCGTCAGGCGCGTATATGTCAGGCATGGAGATGTGGATGGACGCGCAGAGGTCGTGCCGAATGGACCAGCAACAAACTGTGGGTCCCCAGGTCGCGCCCTGCTCGTTCCCGCCGAGCATTAAGGAGGAGAGCGCGTACTGTCTCTACGAGCCGCAGAAGTGCCCCAAAGCCTCGACCGCCGAAGACCTGACATACTCCAGGCTAACCACAACAGGCCCAGGTTCAGGCTCATGCACAGTCACCGACGGTGGCGGTGGTGGGGGTACTGTGCCAGTGCCTGGCTACTTCCGCTTGTCTCAGATGCACGCACACTCTCATAAAGTTTACCACGGCGCCCAATCGAACCCTTCTCATTCTCACTTTGGCCTACACCCCCCTGCACATACTCGCTTCCACACCCCGACCCCCCCACCGTCCTCAGCCTCAGCCTGCTCAGCCACGGCGGCTTACAAGAGAAGAGACACGGAGGAGGCTCTGTCTTCCGGTACCgcgtcccagccccagcagacgCACGCCCCACTGGGGGACGAGGAGGCACGAGCGTCCTCCGACGCGGAACCTTCATCTCCCGAGGAAGCTGCAGAGGACCTAGAGAAGGAGATGCCAGCGAAAACACCTAAAGGAGACACAGAAAGCGATTGCACGGCCAACTGGCTAACAGCAAAAAGCGGACGGAAGAAACGTTGCCCATACACCAAGCACCAAACACTGGAGCTCGAGAAGGAGTTCCTCTACAACATGTACCTGACTCGCGAGCGTCGCCTAGAGATCAGTAGGAGCGTGCACCTGACGGACAGGCAGGTCAAAATATGGTTCCAGAATCGCAGAATGAAACTGAAGAAAATGACACGGGAAAACAGGATTCGTGAGCTCACGTCAAATTTTGGTTTCTCGTGATCACTTTGAATGTTTTCAATAAGCTTTGTATTGAACTAGCTTTAGTTAAAATTCAAGATGTAAAGGGCACATCTTTAATAGGCCTACATACAAACCTTGTCTTTGCATCGTCCTATATAAGCTACTGGTAAAACGTGAATGTTATTGGGttgtctctttttctttctttttgttcGTTGATTCGGTTCTGTTGTTGTCACTTGTTGGGGTAGGTGTGTTGAGTAAAACAATGGAAGGAATTTGCTTTGGGTCTTATAGGATTGTAGCCTACTTAAAAtacttaaaaataaatatatgtttgTTGTAGATACAAATATAAATCGCATTTGAGATGTCCGTTTATATTGCATATATGTGGGGAGTTTCCTTTACATTTATACTGCATGAAACAACATGATTCAAATCCATCTTTTCCTGCATTTTGCAATGTGGATCACACTAAAATGTAAGGCCTGTAAGGGAATAAGATGAGTCGCCCTGTAAATGTATTCTTCCGATGTAATGTTTGGAGATATTATGATGAGCTGATTGTAAGTGTACATAGAACAAGATACATTTGATCCACTTTAGGATAATATTGTTGTGCAGACTCGAACTAAGGGAAATGTAGGCTACGTGAGCAGTCTACATTGTGAAATTGTTTTTATTGTGTATATCATTATGTACATATGAGGTTGTGTTTTCGTGTATTGCGTAATAAATTATCAGTTCACAAAAACTG

Function

NR:

description
homeobox protein Hox-A10-like

GO: NA

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572546.2 True 2483 mRNA 0.49 4 57124127 57130231

Neighbor

gene id symbol gene type direction distance location
LOC110496573 LOC106588846 coding downstream 1772 57117468 ~ 57122355 (-)
LOC110496569 hoxa7aa coding downstream 10018 57101716 ~ 57114109 (-)
LOC110496565 hoxa3ab coding downstream 14499 57073462 ~ 57109628 (-)
LOC110496567 hoxa5aa coding downstream 18672 57102226 ~ 57105455 (-)
LOC110496568 hoxa4aa coding downstream 29860 57090787 ~ 57094267 (-)
LOC110496576 hoxa11ab coding upstream 1234 57131465 ~ 57134795 (-)
LOC110496578 hoxa13 coding upstream 15918 57146149 ~ 57148279 (-)
LOC110496951 NA coding upstream 148835 57279066 ~ 57284390 (-)
LOC110496580 LOC106588863 coding upstream 206111 57336342 ~ 57373792 (-)
LOC110496581 LOC106588859 coding upstream 289716 57418906 ~ 57427510 (-)
G1565792 NA non-coding downstream 7542 57115557 ~ 57116585 (-)
G1565789 NA non-coding downstream 16757 57106845 ~ 57107370 (-)
G1565781 NA non-coding downstream 47557 57076128 ~ 57076570 (-)
G1565797 NA non-coding upstream 630 57130861 ~ 57131087 (-)
G1565803 NA non-coding upstream 10886 57141117 ~ 57142923 (-)
G1565819 NA non-coding upstream 33318 57163549 ~ 57163778 (-)
G1565825 NA non-coding upstream 37551 57167782 ~ 57168087 (-)
G1565856 NA non-coding upstream 74823 57205054 ~ 57205284 (-)
LOC110496560 LOC106588840 other downstream 386780 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 635838 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2458484 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2471277 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3229178 53887137 ~ 53895002 (-)
G1566899 NA other upstream 897280 58027511 ~ 58027790 (-)
G1566923 NA other upstream 945392 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1037153 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1280268 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1739132 58869363 ~ 58870007 (-)

Expression


Co-expression Network