LOC110496576 (hoxa11ab)


Basic Information

Item Value
gene id LOC110496576
gene name hoxa11ab
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57131465 ~ 57134795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572547.2
AATCCTTCGATAGCAATATGTCACTTCTCTACATTTTAACAACCAatgcaattatatatttttttctgactTGCAGCATATAAGGGAATTAATTTTAGACCGACATAGCGATAAACCACCAATGTCAAGCTTCAGGACAACTTGCAGTCTGTCCCACACTCACACTCAGTCACTGAATAACTCCTCGTGCTCGCACACGCGCGttcacactgactcacacaccctctctcattgcgcacacacacacgctctcataCACGCGAAAGCTGTCAATTTCTGCCGCTGGTCACGTGACCCACGCCTCCCTGGAATGGATGGAGATTGCTCTCCACGTCAGCCTACGTCTAAAAATTTCTGCCTCGCGGACCTGCTTCAAAGAGGCAAGAGCCAGGGCGCTCCAGAGCCATGTAAAGGGCGGCTCTAGAGGCATGACCCACATAGAGTAGTAGAGTGAAGGAGTGATGGATTTTGACGAGCGGGTCCCCGTCGGTTCGAACATGTATTTGCCCAGTTGCACCTACTACGTCTCGGCGGGGGCAGACTTCTCCGGTCTACCCTCGTTTTTGTCCCAGACCCCGTCTACTCGGCCCATGACATACTCGTACTCCTCTAACCTGCCTCAGGTCCAGCCGGTGAGAGAGGTGACGTTCAGGGACTATGCCGCCATTGACGCGTCCGGTAAATGGTCACACCGGGGGAACCTGCCCCAGTGTTACCCCACCACGGAGGAAATGGTACATCGGGACTGTATGTCCTCGCAGCCCACCATGGGGGAAATGTTTGCCAAGAACAACCCTACCGCCGCTGCTGCGTATCACCACCACTCCGGCGCGGGCTGTGCAGTGTCCAATTTCTACGGGAACGTTGGCAGAAATGGGGTGCTGCCCCAAGCCTTCGACCAGTTTTTCGACACAGCGTACGCCAACGCCTTAGAAACTCCGTCGTCTAACGACTACTCAGGGGACAAAACGGCCACCAAGCAGACAAGCTCCGCCGCAGAACACGAGCCATCGTGCCGGGAAACGGAGGGGAAGGAGCCGCGCGAAGATACCAGCAGCCCGGAGTCCTCTTCCGGCAACAATGAGGAGAAATCGAGCAGCAGCAATGGACAGAGGACTCGTAAAAAAAGATGTCCTTATACAAAATATCAGATCCGAGAACTGGAGAGGGAGTTCTTTTTCAGTGTGTATATCAACAAAGAGAAGAGACTGCAGCTCTCTCGTATGCTGAACCTCACCGACCGCCAAGTGAAAATCTGGTTTCAGAACCGAAGAATGAAGGAAAAGAAATTAAACAGAGACAGATTACAGTATTACACCACGAACCCACTGCTTTAGGAGTGACTTGTCATATGCGTTTACAGACTTATTGACTCGCTGTGGTCTCTTTCCCCTGACATATGTGtcagcaacaacaacacaacaacagcaaTGGCTGTAGCTGCAACACGATGCTCAACTGTTAATTTCAAGTTCGTGGACAGGCAACATAATCTCTCCTGATTTCAAACCGTTTGAGAATGAGCATGATTTAACTGACACACTGACGGCATTTTGGCCattagacttaaaaaaaaaatttaaaaaatctgcGGATGTTGTCCTCACCAAGACTATGTTCTCTTTCTTGTGTATCCTAATATTATTGTGACACAGAGTCGCCTTCATTTTCTTCTCAAAAGGCGGAGAGCCTTATCAGTCTACCAATGACTGACCGGGGTGATTAAAAAAATACATCCTCTTGTAAATTACATTTTCGGTTTTTAAGATCGTACAAGTGGTGACGTGGTAGGACTATAGGTTTCCTGTGACAGTGAATATGTGATGTTGTGCATTTAATAATGGAGGCTAGGACTTTGGTGTGACCAAATAATGAGACTTGGGAGGGTGAGATTGTAAAGTGTCTTTTTTAGTAAGGTTATTTATTTTGTAGCCACTCATTTCCTAAAGAATACCAACTGCAAAGCTCTATCAGTAAAATTATAGGGATTCGGTGTTACATTTTGTTGACCCCAAACCCTCTACCATTGTAATAGTTTCAAAACAATACATGTAATCTGGTTGTTTATATTTTGTGTACTTGATTACCACACCCAATTTGGCTTTGAATTTGATGTTAATGCACGGAAAACCCACAATGAGAAGAATGTTAACCACATACAGACAGAACCAGATATAAGCTTGTTTAACCTCATTGCTGTAGCAGCCTATAGTCGAATTGTTGCCTTGCGACATGCGTGTAGATAGTACAGGTAACGGACAAGGCCGCAGTCTTTTGATACCCAGATTGAGAAAATGTGCATCCAGGTTTTGTTCAAATAGGACGAAATATTTTTTCCATTATTCACAGGTCTTCATGATTTTCATTGAATTAACATGAATGTTAAATGCGTTTTGAATATACTGTCAGGGACATAATATTGTATCAACTGCTTGTTATGTCCGACACATTCTGTATTATCCTATATTTccaaattaaaaatgaaaatattATTGAAGGAA

Function

NR:

description
homeobox protein Hox-A11a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572547.2 True 2501 mRNA 0.45 2 57131465 57134795

Neighbor

gene id symbol gene type direction distance location
LOC110496574 hoxa10ab coding downstream 1234 57124127 ~ 57130231 (-)
LOC110496573 LOC106588846 coding downstream 9110 57117468 ~ 57122355 (-)
LOC110496569 hoxa7aa coding downstream 17356 57101716 ~ 57114109 (-)
LOC110496565 hoxa3ab coding downstream 21837 57073462 ~ 57109628 (-)
LOC110496578 hoxa13 coding upstream 11354 57146149 ~ 57148279 (-)
LOC110496951 NA coding upstream 144271 57279066 ~ 57284390 (-)
LOC110496580 LOC106588863 coding upstream 201547 57336342 ~ 57373792 (-)
LOC110496581 LOC106588859 coding upstream 285152 57418906 ~ 57427510 (-)
LOC110496865 LOC106588853 coding upstream 361844 57496639 ~ 57567805 (-)
G1565797 NA non-coding downstream 378 57130861 ~ 57131087 (-)
G1565795 NA non-coding downstream 1762 57129477 ~ 57129703 (-)
G1565792 NA non-coding downstream 14880 57115557 ~ 57116585 (-)
G1565789 NA non-coding downstream 24095 57106845 ~ 57107370 (-)
G1565803 NA non-coding upstream 6322 57141117 ~ 57142923 (-)
G1565819 NA non-coding upstream 28754 57163549 ~ 57163778 (-)
G1565825 NA non-coding upstream 32987 57167782 ~ 57168087 (-)
G1565856 NA non-coding upstream 70259 57205054 ~ 57205284 (-)
G1565864 NA non-coding upstream 81250 57216045 ~ 57218817 (-)
LOC110496560 LOC106588840 other downstream 394118 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 643176 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2465822 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2478615 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3236516 53887137 ~ 53895002 (-)
G1566899 NA other upstream 892716 58027511 ~ 58027790 (-)
G1566923 NA other upstream 940828 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1032589 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1275704 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1734568 58869363 ~ 58870007 (-)

Expression


Co-expression Network