LOC110496578 (hoxa13)


Basic Information

Item Value
gene id LOC110496578
gene name hoxa13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57146149 ~ 57148279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572548.2
TCCTTTTTTCAGCCTCTATGCTTTTTTAAAAAAGAGCCAGAAGCCTCAATGCTGGATGTCGTGCTATGACAACGTCACTGCTCTTCCGTCCTCGCTGGGTCGACCCGTCGGTGATGTTCCTCTACGACAACGGCGGCGGTTCGGATGAAGTGAGCAAGAACATGGACGCTGGCGGTGGTGGTTTTGCGGGAGGCAACTTTGCGGCAAACCAATGCAGGAACCTGATGGCGCACCCCGCGTCCCTCGCTCCGAGCACGGCATACTCGTCAAGCGACGTCCCAACCTCGGGAATGGGCGAGCCATCCAAGCAGTGCAGCCCTTGCTCGGCTGTGCAAAGCTCCTCCAGCGCGTCCCTGCCCTATGGATACTTCGGTAGCGGCTACTATCCGTGCAGAATGTCGCACCACAGTAGCATAAAATCGTGCGGAACGCAGCCCCCCTCTGCGTACGGGGAGAAGTACATGGACACATCTGCTTCGGGCGATGACTTCACCTCTAGGGCCAAGGAGTTCGCCTTCTATCCGAGCTATGCGTCGGTCCCATACCAGCCCGTACCCAGTTACCTGGACGTGCCAGTTGTACCAACTATGAGCGGGCCAGCAGAACACAGACACGAGCCCCTGCTGCCCATGGAGAGCTACCAGCCGTGGGCTCTAACTAACGGCTGGAACGGGCAGGTCTACTGCACCAAGGAGCAGCCTCAGCTCGGACACATGTGGAAATCCTCCATACCAGACGCGGTGTCTCCTGTGGGAGGGGACCTGAGCTCCTTCCGACGTGGAAGAAAGAAGCGCGTGCCATACACCAAGGTGCAACTGAAGGAACTTGAGCGCGAGTACGCGGCCAATAAATTTATAACAAAGGACAAACGAAGGAGGATATCGGCCCAGACGAACCTGTCCGAGCGACAGGTCACTATCTGGTTTCAGAACAGACGCGTAAAGGAGAAGAAGGTGGTCGTCAAAGTGAAGAGTATCAGCTAGTTTTGACTGACATACAACAATGGGATGggaattgaacacacacacacaatatgctaTTCACGCCTTTTGATTGGAACAATTTAACCCTTATTTCCCACAGAACATGGTTCACAAATATACTCTGCCAAATGCGTGCCGAGACCTTTATGGAACGAAAATGTAGAAAAACTCTGGACCTTCCATTTTCCTCCATTGTGTATTGTTCTCGGTGAATGGAGACCAAAGCAAGGAGAAAGTTAGGGCCGTATAATTTTTGCAACTGGCATGCAGTAACCTCAGGAAAACAGACACTCTAACTTCAccgtgtggagaaaaaaaaaacatttggaaatCCCCAGGAAGTGACGGCCTTTAGGATTAAAGCTTCCACGGTTAAATATTAATCCGTTCCATTTCCCCTTCAACACTCCACTAAACACGTACATCTTAATTTAAAGTTTAGCTTCTTCAAACGGTTCTCCTGCTCTCACTCATAACCAATCCAAGGTGCAATCCCGCTTGTAAATGCATACATCATTTTCTGGGAAATGTGTGCCCGTGTGAACCATATGTCTtttatattgtgtgtgtattcatgtggTTGTATATAAAGGTAAACTATACAGGCAACACTATAATATGTCAAGGCTATCTGTGTCTGTTAAATATGTCGGTGTAAAACTATTGACACAAAAATCTGTCCAATAAAATCCGGACATTGTTGAATCATA

Function

symbol description
hoxa13 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including circulatory system development; endothelial cell differentiation; and reproductive structure development. Located in chromosome; intermediate filament cytoskeleton; and nucleoplasm. Implicated in Guttmacher syndrome and hand-foot-genital syndrome.

NR:

description
homeobox protein Hox-A13a

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572548.2 True 1693 mRNA 0.49 2 57146149 57148279

Neighbor

gene id symbol gene type direction distance location
LOC110496576 hoxa11ab coding downstream 11354 57131465 ~ 57134795 (-)
LOC110496574 hoxa10ab coding downstream 15918 57124127 ~ 57130231 (-)
LOC110496573 LOC106588846 coding downstream 23794 57117468 ~ 57122355 (-)
LOC110496569 hoxa7aa coding downstream 32040 57101716 ~ 57114109 (-)
LOC110496567 hoxa5aa coding downstream 40694 57102226 ~ 57105455 (-)
LOC110496951 NA coding upstream 130787 57279066 ~ 57284390 (-)
LOC110496580 LOC106588863 coding upstream 188063 57336342 ~ 57373792 (-)
LOC110496581 LOC106588859 coding upstream 271668 57418906 ~ 57427510 (-)
LOC110496865 LOC106588853 coding upstream 348360 57496639 ~ 57567805 (-)
LOC110496583 LOC100380778 coding upstream 429134 57577413 ~ 57580463 (-)
G1565803 NA non-coding downstream 3226 57141117 ~ 57142923 (-)
G1565797 NA non-coding downstream 15062 57130861 ~ 57131087 (-)
G1565795 NA non-coding downstream 16446 57129477 ~ 57129703 (-)
G1565792 NA non-coding downstream 29564 57115557 ~ 57116585 (-)
G1565789 NA non-coding downstream 38779 57106845 ~ 57107370 (-)
G1565819 NA non-coding upstream 15270 57163549 ~ 57163778 (-)
G1565825 NA non-coding upstream 19503 57167782 ~ 57168087 (-)
G1565856 NA non-coding upstream 56775 57205054 ~ 57205284 (-)
G1565864 NA non-coding upstream 67766 57216045 ~ 57218817 (-)
G1565879 NA non-coding upstream 101736 57250015 ~ 57250228 (-)
LOC110496560 LOC106588840 other downstream 408802 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 657860 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2480506 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2493299 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3251200 53887137 ~ 53895002 (-)
G1566899 NA other upstream 879232 58027511 ~ 58027790 (-)
G1566923 NA other upstream 927344 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1019105 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1262220 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1721084 58869363 ~ 58870007 (-)

Expression


Co-expression Network