LOC110496951


Basic Information

Item Value
gene id LOC110496951
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57279066 ~ 57284390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037334.1
ggagtcaacatgggccagctccCCTAGGACTGCTGCCCAGAAGAAATATCAGTCTGTGCAGAGAAGCACGatattgaacttcactcaactttcccctttagttaacatTATCAACATCCTCTGTGCTAATATAACTCCCAGGTGAGTTATTTTTTtccaacaataataacaatattacACATCAATACAGGGCCATTCCTGTGAATACAATGAAAACACATTAAATAGAACACCAGGCACTAATGTTTCCAACTGATATAAGTTTCACACGTTTGAGGGATTTATACAATTGTAAcaattcaattaaaaaaaaaactacaaaataAGGAATTTTTCCACCCCAATTACATTTGTGAATATAATATTTGGCCAAGCGAATAATAATGTCAATAAAATAGTTATGATCGGAATTACAAGGACGAGCATAATGCCTCCCAGGTGAGAGCGTAATGCCTCCCAGTGTTGATTTAGCGTCTGGTTTTCACTTGAAACTTCATTTTCAACTAATTGCCAACGTTGCAAGGCAACTGGGATTGCGCAGCATTGAAAGGTAAGTAATATGTAAAAAATGTCATAAGTTAGCCGATATAACAACTTGGCCAGCTAAGTGAATGGTCGAGGTCTTTGTAGCTAACGTAACATCTGCGAAGTTTAGATTTAGAAAGTTGCTAGCTAACGTGGTCAGTTAGCGCTAGATTAAAATTAGCAAACTATTCGATTTGAGAAAatttatcaaaatccagaagGATCAGAGTTGGGCTGTACCGTTAGTTGATTTCAATCGTGTGCGTGTTGAGTTCACGAGGCCGACTAACTTTAACATTAGTGGTGCAGCAGGTGCATGGTGTTAATTGGGGTGTGACCAATTTGAGCCTTATTTGGTGCAGCATGTAACTTGCCACGAAGTgaaggtaacaacatggctaatATCTACTAATTTGTTATTCAAAACGCATATAACTAAGAATGTTTGTCTGGCCAAATATTGTTAGccatatagctagctagttaggtaTCTAACTACAATACCGATCTCAGCATATTGTAATTTAGAGCTAACTTTAGCGAGCTAGTGTACGTGGCCAGACATGATAGGGTTGTCCTCTTGACATTTTTATATTAACATGTCTATCTATGGTGTGTGCTTGTTGTTAATCACAGATCAGACATTGTGTTCAAGCtaatgtagccgatgtgaaatggctagctagttaggggTGGtgtcaatcagtgacgtcacttgctttgagaccttgaagtagtggttcccctttctctgcaagggccgcagcttttgtggaacgatgagggtgactgttgacgtgtgcatagcgtccctggttcgcgcacAGGTCGGGGCAAGGGGACGGACGTTAAAGTCTACTGTTACTGGTGCAGTGTCCCGGATCACTGGTTACTGCGGAaagaggaggaggtcaaaaggggagTGGAGTACAAAATAGGTTTGGACTGCCCTCTGCAGCACAAAAAAAAACCAATTTGATTCCTAAACTGAGGTGGAGGAGGATGTCCTGCTGGACCTGATTGAGGCCAGTCCAGACCTGTGCCTCACAATCAAAGATCTTTATGAAGACTTCTCTCCTGCAGGCTGTTCAACACCTAGTTCCTCCACAGACACATTATCCTTCTAAAGTTATTTAGACCTGAGATCTCCAGAAAGGCTGTCTAAAAAAGCCAGGACAACCTTAGGAGATGAGGCCATTGACTCCACAGCAGCAAAAGAGATGGTCCGAGACGCCCTGACTAGTAGACCTGGTGGGCAAGATGTATTAGAAGAGGACCAGACAACCAAAACATTGGACCACAGAACCAGGAGAGAGATGATTGCCATCTTAGTCAGCCACAATCCTGCAATGaagagatttcaccccagtCGGGAGGCCCAACCCATAGGAGGAAGACTTGGCCCACCAGCTTGTTGGTGATGCTTGCAAGGAGGCCATATCGTTCCCTGTCCACTTGGCTGATGAAGAACAAGTCTATCAGAAGATGGAGGTGTCCCAGTATCGCCAGGGGCTAGTTTATAGTACAGACAGAAGCACAGATGTCCTCAGTCTTTTCCAGGTTTCTGGACATCAAAGGATTGTGATGTAGTATGTGCTGGAATCAGAAGTACAGGCTAGTTATCTGATTGAGAACATGAGTTGTCTCATTGAGAACATGATTTTGTGTTGGTCATGAAGTTGAATGCTCCACTTTGTTTTGGGTGAATCAGGACTTTTTGCTGATGTTCAATGATGAAACATCCTCTAAACTCCTTGAAAAGTGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGATAAAATCCCTGACTACGACCATGATATGCATTGCCTCTTAAAGTCTGCTGAAAACTGCCAGAGAATGACAGTGAAACCAATTTGGACAATGATAttgtgctgctgctgcttcatCTCCCACCAGCAGCACGAGGGAAGAGGACCAAGATCAGGGCCAGTGATGCTGTGGGCAGTCATGCTGCAGCATTGTAGACCATCTGGATGGGAGCCATGGTCGGGATGGATGGGAGCCTTGCCATCGGAAGAAGACAGAGCAAGATTGACAACTACTACAACGTGGTGGACAAGAGGCTTGTACAACGTGGTggccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccaggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggccccaggACAAAACTTCTTAACTAGATAAATGTATGTTACGTGCCTTTTGTTGTCAAGCGTTGCACAGAAACAGCCAGTCATTGATATCTCATTTGAGAATTAAGCATAGTTTCTATCCCTCCACTAAGTTTAGATTGGTCTGTGCTCAAGATAATTGTAGAGTTTTCAACATACTCAGGTTTCAGAATACATTTGAATAGTATTCACAAGGGTATTGATCAAGTAGTTGATGCATTAAGCATAGAAGGTCCCTCCCATGTTGCTGATTCTCCAGTCCAGTCAGAAGCTCCACAAATGGTTGGTGACATTGGTGTCCCACATGATAACACTCAAAATGATTGTTTTGATAAGAATGGACAGTCTTGCTAAAGATATGTGTGCATCCATCATTGCCATGTTGCAAATAGTGTTGTCAACAGTAGTGTGATTCAGAAGAGCTTACTACTGGGCTGCACTCCCAAATGAACAAGATGTCCTGTCAGTTATGCCTATGGATAATCATTCTACATCTACTGTAAAGGATAGGTTTGAGAATTTTAAAAACCTATTTGCCAGTTTTAATACAGAAATCAGGAGCACAAAGTACTTCAACCAAAAATGGGGGTTTTGTGGAGCCAGTAGAAGTAGTGTTTGGAGTGAGATATGATAGCAGGGTAAATAAACAGTCCCAGCGaaagatacttttgtatatattccTATACTGGAAACATTGACGTTCATGTGTCGCAATTCTAAAATCTGTAAGTTATTGGAAAATGCACCTAGGGATAAATCTGTAGAAGACACGTATGAAGACCTTTGTGATGGAAGTTACTTTAAGACCCATCCCTTGTTCTCAAAACATTGTACAATTGGATCTGTAAAGTATTTCTATGGTGACTTCAATTGCCAGCCCGCTTGGATCCAAGCGTGGTGTTCACAAGGTAGGCACCATTTATTTTGTCCTCAGGAATCTGCCGCCCAAGTTTAACTGCTGTGATGAATATTAATTTAGTGTCATTATTTCATTATCAAGATCTAAAGAAATATGGCTATGATGCCATTTTAGAGCCCTTGGTTAATGATGTTAAAATGGAGAGTGATGGTGTAAATTTGTCTTTTTCAACTGGCAGTGCCTTTTTTCAACTGGCAGTGCCTTTTTTTTCAACTGGCAGTGCCTTTTTTATCAACTGGCAGTGCCTTTTTTATCAACTGGCAGTGCCTTTTTTATCAACTGGCAGTGCCTTTTTTATCAACTGGCAGTGCCTTTTTTTATCAACTGGCAGTGCCTTTTTTATCAACTGGCAGTGCCTTTTTTTTAT

Function

NR:

description
uncharacterized protein LOC108179166 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037334.1 True 4150 mRNA 0.43 7 57279066 57284390

Neighbor

gene id symbol gene type direction distance location
LOC110496578 hoxa13 coding downstream 130787 57146149 ~ 57148279 (-)
LOC110496576 hoxa11ab coding downstream 144271 57131465 ~ 57134795 (-)
LOC110496574 hoxa10ab coding downstream 148835 57124127 ~ 57130231 (-)
LOC110496573 LOC106588846 coding downstream 156711 57117468 ~ 57122355 (-)
LOC110496569 hoxa7aa coding downstream 164957 57101716 ~ 57114109 (-)
LOC110496580 LOC106588863 coding upstream 51952 57336342 ~ 57373792 (-)
LOC110496581 LOC106588859 coding upstream 135557 57418906 ~ 57427510 (-)
LOC110496865 LOC106588853 coding upstream 212249 57496639 ~ 57567805 (-)
LOC110496583 LOC100380778 coding upstream 293023 57577413 ~ 57580463 (-)
fam221a fam221a coding upstream 314898 57599288 ~ 57628309 (-)
G1565893 NA non-coding downstream 9427 57269338 ~ 57269639 (-)
G1565881 NA non-coding downstream 28531 57250272 ~ 57250535 (-)
G1565879 NA non-coding downstream 28838 57250015 ~ 57250228 (-)
G1565864 NA non-coding downstream 60249 57216045 ~ 57218817 (-)
G1565856 NA non-coding downstream 73782 57205054 ~ 57205284 (-)
G1566539 NA non-coding upstream 92920 57377310 ~ 57377520 (-)
G1566546 NA non-coding upstream 102410 57386800 ~ 57387043 (-)
G1566547 NA non-coding upstream 103016 57387406 ~ 57387641 (-)
G1566553 NA non-coding upstream 108553 57392943 ~ 57395443 (-)
LOC110496560 LOC106588840 other downstream 541719 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 790777 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2613423 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2626216 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3384117 53887137 ~ 53895002 (-)
G1566899 NA other upstream 743121 58027511 ~ 58027790 (-)
G1566923 NA other upstream 791233 58074209 ~ 58078146 (-)
G1566972 NA other upstream 882994 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1126109 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1584973 58869363 ~ 58870007 (-)

Expression


Co-expression Network