LOC110496580 (LOC106588863)


Basic Information

Item Value
gene id LOC110496580
gene name LOC106588863
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57336342 ~ 57373792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572551.2
ttgtggctgtggtaactactgACAACCTCCAGCTGCGTTTGCCGCTGCTGTGACTGTCCTGCCTGGCCGCCCGGTGTCTGATACGCTGCTCCCCTGCTCCTTCCCTGGATCCAAAGCCCGCCTTGGCTACCGAACTCCCAGTGAATGCACTAGTCAGCAACCATGACAGGCATCGCCGCCGCGTCTTTCTTCTCCAACTCCTGCAGGTTCGGGGGCTGTGGGCTCCAGTTCGAGTCTCTGGCCGAGCTCATCGTCCATATCGAGGACAATCACATCGacaCAGATCCTCGTGTTCTGGAGAAACAGGAGCAACAACAGCCCACTTACCTGGCCCTGAGCTACATCAACAGGTTCATGACAGATGCAGCGCGTCGGGAGCAGGAGACCTTGAAGAAGCGGGCCACGCCCAAACTTTCCCTGTCAATCACAGGGGGTGTGTCTCGAAACAGCGTGGCCACGCCTCCACGCCACAGCAACGGCAACCTGACTCCTCCCGTGACTCCACCCatcacaccctcctcctccttccgtAGCAGCACACCCACAGGCAGTGAGTATGACGATGAGGAGGTGGACTATGAGGAGTCAGACAGTGATGAGTCCTGGACCACGGAGAGTGCCATCAGCTCCGAGTCTATCCTCAGCTCCATGTGtatgaatggaggagaggagaaaccctTCGCCTGCCCTGTGCCTGGCTGCAAGAAGAGATACAAGAATGTGAACGGTATTAAATACCATGCCAAGAACGGCCACCGGACACAGATCCGTGTGCGGAAACCCTTCAAGTGCCGCTGTGGGAAGAGCTACAAGACGTCCCAGGGCCTGAGACACCACACCATCAACTTCCACCCGCCTGTCTCCGCCGACATCATCCGCAAGATGCAGGGCTAGAGACGATCATCGTGACAACCCCTGGTCACACCCCACCATGTATACCCCCCAAACATTACCCTATTCCTCACCAGCActacccacccaaccaccccaaACCTTTTCAATTGTCAATATCCACCTCACCACTCCCAACCACCCAAAACATATCCCTATCCCTTCTGGCCCAACATAGGGGTGACAACCCAAACCCCTATCCCTTCTGGCCCAACATAGGGGTGACAACCCAAACCCCTATCCCTTCTGGCCCAACATAGGGGTGACAACCCAAACCCCTATCCCTTCTGGCCCAACATAGGGGTGACAACCCAAACCCCTATCCCTTCTGGCCCAACATAGGGGTGACAACCCAAACCCCTATCCCTTCTGGCCCAATCTTAGGGCTGACAACCCCTATCCCCGCTGGCCTAATCTTAGGGGTGACAACCCTTATCCCCTCTGGCCCAATCTTAGGGCTGACAACCCCTATCCCCGCTGGCCTAATCTTAGGGGTGACAACCCTTATCCCCTCTGGCCTAATCTTAGGGGTGACAACCCTTATCCCCTCTGGCCTAATCTTAGGGATGACAACCCCAAACCCCTATCTTAGGGGTGACAACCCAGACCCCTATCCCTTCTTGCCTCACACTAAAGGATCTAGTGCATGCTTTAAGTTGTTTAGACTTTGTCTTGTATTATGTTGTATGGTTTTGACATGCTATCTCTATAGGCTTAGTTTTGTTGTTGTACATTTGCACATTCTTATGCTATCACAACAATTGTCCTTACTTTTTGTATTGACATACGGTgctaactgtaaaaaaaaatatataaaaaaaagagtAATGTGAGAGAAGGATGAGGGCAAGAGGAGTGGATGAATGGAGTTGTGTTTTACagtctatatatagatatataaacaataggtgtgtgtatatacaaatatataagTATTCATAACCATATACAAAATAGTTGCTTTATTTTATACTTTATTTTTCAATATATTTTCCAGATATTTTATCGATAAGTGTGTTTCATTCCTCAACCCCCTGAGACAATCTGTTCTGTGGTGTCATAGTTCAAAGTTGAAACAGCTAGGTGACCTCAGGTCTAGATATTCCCAGCAGCAAAAAAAACAAACTGACTAGGGCTTGAATTCTAACTTCAGATCTGTGTACAAAACAAAAATGGTTTCTCCTATTGCTATTTAATGCACGATTTGCGCTGAAGTTACATGCAGATTTCATGTTATCATTTGGCCCatatagagaaacagagaaagtaTTGAATCCCTTCATTCCCACAGTTCTAGAACAGTTATAGGACTGATCCCCAATGATTCCGGAATGTATTGTCCATCCTGTATTCTATAAGGTTATTCCAGACTAGTGTGAGCAGACCAGTTGAGGCGTCATACTGTATTCTCAAAGGTTATTCCAGACTAGTGTGAGCAGACCAGTTGAGGCatcatactgtattctattccatTTGTCAAGTATTGTTTCTGGTTACTTTTCCATGATCATTGCCAACAGCTCTCTACTGCCAAACATTGACATGTgcctgagggggagagagactgtcATAAGGTTTCATCTTAGAGACGCGCAAAAGTGTCAAGGGAATACTGTCTCATTGCGCCtcaagtgtgagtgtgtgtgcatgcttttgtcttaaagtatgtgtgtgtgtcgagaGATTACACCTACAACCTTTGATTGCCTTGCGTTGTAGACCATAGCATTCCAGTAGTCAGTGTGAGTTGCTTCTTAGGAGAGTCTTTCTGCAGTAAGTGAGCTTCTAGTGTTATTCTTCTTTCTGTTAGTCCTCTATAGTATTACAATTTATGGCTGAGGCTCAAATGTGAGTGCCAGGTCACTGGGcgagtcccaaattgcaccctattcctatgggccctggtcaaaagtagtgccataCCAAGGCCTTGCCCATTGCTCCTGTAGAGCAGGAGAGTGGTGGACGTGATCCAGTTGGGATATCATGCTTTCAGAGTACAGCGGAGTCATTTTGTCAAAACATTTCTAACCTGTCATTCAGTTGTGTGACGGTCCCCCACCACACACAACCCCACTTTACATGAGTGTGGCAAAGTGCCGTTAAGGtcagggcccgtattcacaaagcatTTCAGAATAGGAATGCTGATCAGATTTTCCTTTTAAAATCGTAGGaggggggggacctgatcctagaacagtactcctactctgagatgtgTTGAACACAGGCCCAGGATACAAGACAGaaagaaaatgtcagtgaaagaGGAAGGTAGCATCGTTGGGGTAGTGTTTTTGTGTGGCGTACAGAACTCGTTCCGGACTCTGTGCCGGGTTTTCCGTACTTGGAAGCCTTGGCTCCGTAGCAGCTTTCTGGCAAGGGATCGGAGACGCAGGTCACCATGGTTACACTTTAACAGTATTAGTGGGGATGGGAGGATTACATTAGTCGTGTGTGTATGAGGGGGACTATTTCGATATACTGTGTacagtgaatgtattgtaatgtgtgtCTTAAgtgcttttaaattatattttcatATGTTTCCTATTTGTGCAGAGGTTATGAGTAGGGAGACCTGTGTACTATGTCAAACTGTCTTTTATATACAAGAAGCTGCTTCATAAATGTAAAATGCCATTACATTAAAAAAACTCTGGAGCCCA

Function

NR:

description
PREDICTED: juxtaposed with another zinc finger protein 1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19495 JAZF1; juxtaposed with another zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572551.2 True 3563 mRNA 0.47 5 57336342 57373792

Neighbor

gene id symbol gene type direction distance location
LOC110496951 NA coding downstream 51952 57279066 ~ 57284390 (-)
LOC110496578 hoxa13 coding downstream 188063 57146149 ~ 57148279 (-)
LOC110496576 hoxa11ab coding downstream 201547 57131465 ~ 57134795 (-)
LOC110496574 hoxa10ab coding downstream 206111 57124127 ~ 57130231 (-)
LOC110496573 LOC106588846 coding downstream 213987 57117468 ~ 57122355 (-)
LOC110496581 LOC106588859 coding upstream 46155 57418906 ~ 57427510 (-)
LOC110496865 LOC106588853 coding upstream 122847 57496639 ~ 57567805 (-)
LOC110496583 LOC100380778 coding upstream 203621 57577413 ~ 57580463 (-)
fam221a fam221a coding upstream 225496 57599288 ~ 57628309 (-)
LOC118941192 NA coding upstream 278982 57652774 ~ 57656815 (-)
G1565893 NA non-coding downstream 66703 57269338 ~ 57269639 (-)
G1565881 NA non-coding downstream 85807 57250272 ~ 57250535 (-)
G1565879 NA non-coding downstream 86114 57250015 ~ 57250228 (-)
G1565864 NA non-coding downstream 117525 57216045 ~ 57218817 (-)
G1565856 NA non-coding downstream 131058 57205054 ~ 57205284 (-)
G1566539 NA non-coding upstream 3518 57377310 ~ 57377520 (-)
G1566546 NA non-coding upstream 13008 57386800 ~ 57387043 (-)
G1566547 NA non-coding upstream 13614 57387406 ~ 57387641 (-)
G1566553 NA non-coding upstream 19151 57392943 ~ 57395443 (-)
LOC110496560 LOC106588840 other downstream 598995 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 848053 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2670699 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2683492 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3441393 53887137 ~ 53895002 (-)
G1566899 NA other upstream 653719 58027511 ~ 58027790 (-)
G1566923 NA other upstream 701831 58074209 ~ 58078146 (-)
G1566972 NA other upstream 793592 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1036707 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1495571 58869363 ~ 58870007 (-)

Expression


Co-expression Network