LOC110496581 (LOC106588859)


Basic Information

Item Value
gene id LOC110496581
gene name LOC106588859
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57418906 ~ 57427510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572552.2
TTTTCTTTTACTGTCTTCCTCTGGTGCTAGGCCTATGCTGTCTGGAGATATCCATTATGCACTTTGAAACGTGTGCGAGGAGGGAGTCCAAGACTGAGTCACTCAGTCCGGGATCCCCCGGGGGACCCTCGTGGGAAGGAAGGCTTCCCGTCTGCTTTCTCCATACCGAGTATCGAATCTCACCTCGCGAGCCATAGGGGGTGCGGGGGCACGCGGAAAACTCGGTCAAAGGGTTCAGCcacgtatctctctctctctctctccatgcctcgAATACAACAAGATACCGTATATGCGTCCTATCTTCCACGCATTTGATTAGATTTAGAGGACGCGTGTTTGTGTGCACGCGCAGCTCTGAATTCTGTACACTAATGGTGGTGGCGGGACGGGAGATGCGGGGGAGGGGCTgagcgcgcgcgcgtgtgtgtgtgtgctctgcgcGTGAACCCTGCGTTCAGGTCTGTAATTTGCTCCAGATGACCACTTGGGGCCGGGATATGGATCATTCTGGGGAGGTGAGCGTTTCCTCACACGGCATGACAGCGCAGCGCACAAATAAATGTATTCTATGAACCGCAGTTTTTAGCCATGGATCCAGACACCTTTTCACACTAAACTAAGTGTAGGACAACTTTCCTCCACAATGACGGAGCAACAAGTGAAAAATGGACATATGTATCGGACACCAAAGTGAGAGTGGAGAGTCGGGGTAACTGCACTTGAACACAAAGGGGGAATGCCGCATCAGAAGCTTGAGCCAACTGCCGTTTTGGAATGGATACCGGTAATTTCTTTGGTGTCATCTGCTTTCTCCTTTTCTCTTGTGACGGGTTCCTCTCGCCTTCACCCGCCAGCGGCTTCTGTCCTGAGCGCTGCGACTGCCAGCAAGCGCAGCACATCCTCTGTACAAACCGGGGGCTGCGCGCGGTGCCCAAGGTGCACTCCTCGCGGGTCCCAGAGGACGTGCTTGTCTTCAGCCTCGGCGGAAACTTCATCGGTAACATCTCCGCCTTCGACTTCACACGGTATGGACATCTTATAAGGTTGAACTTACAGTATAATCAAATACAGACCATTCACCCAAAAGCGTTTGAAAAGCTCTCCAAATTGGAGGAGCTGTATTTGGGCAACAATCTGATATCAACAATACCCCCAGAAACTTTACAGTCACTGGCAAAACTGACAACTTTGTATGGCAATAACAATGACATTAAGAAGATTACTCCAGAGCTGTTTGGTAATTTGGAGAGCATTGTGAAGCTGAGGTTGGATGGGAACGCCATAGAACTGTTACACAATTCAGTCTTCAAGAGCTTGACTAATCTACATTATCTCCATCTAGAATCGAACCAGCTGAGTCACATTCACAGAAACGCCTTTTCCAAGCTCACCAAACTGCGCTTTCTCAACCTGGCGCAGAACAAACTGACATCCGTGCGTAATGTGTTTACGTTCTCCCAGCTCAGGTCACTGAATACGTTGCTGCTCTCTGAAAATGAAATACAACACGTCGGAAACCACGTCTTTCAGAATCTGAAAAAGCTTTCTAAACTATCCCTCAGCAATAACAACATCTACCATTTGGAAAGCGAGTCGTTGAAAGGACTGTCGAGCTTGACAGAATTTCTGATTGACGGGAACGAACTGGAGAATCTTCCCGCAGGACTTCTCGACCCACTGGAGAGAGTTGAGGAGCTGGACTTTAGTTGCAACCAAATTTCCACAGTGGACCCCTCTGCTTTTGAACAACTGAAGCATCTGAGTGTTTTAAAACTCAAAGACAACAGGCTCACGAGCCTCTCCGGTAACATATTCGCCCTCAACAGCGCCCTTTACGATTTGGATCTCCATGGCAACAACTGGACGTGTGACTGCCGCCTGGGCGAGCTGAAGCAGTGGATGAAGTCGGCGCACTCTCAGGGGAAGCTGCTGACCGTTTTCCTGCAGTGTCATCACCCAGCGACACTGAGGGGGAAGTATCTAGATTATATCAACAGCTCCCAGCTGCAGCCCCCAGGGAATTGGAGCCACTTGTGTGAGACCCAGACTAGGcctgaggagagcagaggagggggTGTCCTGGAGAAAGAGctggaggacagggagagagggcagggagaggtgaggaaggagatagaaggggagaggagaggaatagaggcaGAGGAAAGGAAGGATGGAGAAGAGCATAGGGAAATtgggagtagagagggagtggggaTGAAGGAAATAGAGAAGGTGagcaggggtagagagggagaggataggaaggagggagaggaggaggtgggtatCCAAGGAGACCAGGGAGGGCAAGATGAGCGGGACAAATCCCTGTCATCAAacaggaagagggggaagaaaatATCCGCCAGCCCAAGGTCGCAACCTTCTGCTGAGGCTTCTGGGAAGCGTGAGAAAGGGAGGTGGGATTCCGTTCCGGGCCGCAGCGTTCCTCAAACACAAGCCCCTCTCCTGAACAACCCCACTCCTCCAACCACAACCTGGCCTCAGACAATTGACCACCAAAATAGCCATGGTAACCATCTCAGTGGGCCAATCACAgagctcctcacctcctctccttccacccctcgaAAAGAGGAGCGGTTTGACCTGTTCAGAGGCAGTCACGAGGACGTTATACCTGCAGTGACCGACCCCTGTGTGTTCAACCGCCACTTCATCACCAACGTGACAGTCGACCAGGTCGCCTCCAGCACGGCCACGGTCCACTGGACCACACGCGACCACAGCCGCTTTACACCGGGAGCCGGACCGGGACTAGAAGAGGTCCACTACCGAGTGCTGTTTGACCGCTTTGGGTCATCTGACCGTTTTCCTTGGTACGTGTATGCCCGTGGCGCGGCGCGGTCGGTGATGTTACGAGAACTAAGCCCAGACACCACCTACATGGCTTGTGTTGAGGGTGTGGTGGGAGGGTCTGTGTGTCAGGTGGCGCCCAGGGACCACTGCGCCGGATTGGTCACTCTCCCAGAAGAGGCTCATCACCAAGAgacactgacctctgacctccaacTGGTCACCGTGGGAACACTGGCCGGCAACGCCGTCCTTCTTCTGGTGATTGGAGGAGCCTGGCTGGGGCGAAGTTTGAGGCGGAAGCTGAAAAGGAGGAAGTCAGCAGTGCATGTGCGTCACATGTACTCCACGCGGCGACCATTCCGCAGCTCCATGGCAACAACGGCGGCGGTGTCAACAGACTTCACAAGCTTCCAGAGCAGCCGGCCACCACGGCTTGGAACCCTGGAGGAAGGGGGCGACCTTATAGAGTTCCCCTGCGACCGTTTCCTTGACATCAGCCCCACCCGTAGAGACAACAGTGACATGCAGAGGTTCTCAGATTAATAAACACCATAGAACTGGAACTTGAAAACATGTTTGCGCTGTGACCCACTTAAGCGctagaatatatatttttaattgtgaGCATTAGATAATCCATATTTAGAACCTGAGAACACCAAGATGCCATCACCAGGAAGGAACATCCTCAGGAGAATGTGTAAGATgctgcagagacagagacagaagtgGACTGGTATTTAACCGGCACTCTGGAGCACTTCATGACCATAGCAGGACCACAGCCAGGGTTGAGTTATGACCATAGAACCACAAGGTTATATTCATGACCACATAACCACAGTAAGGTTGTGTTCAGGCAATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGGTTATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGCTCTGTTCAGGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTCTGTTCAGGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACAATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTCTGTTCAGGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATAGGACCACAGTTATAGTTCTGTTCATGGGTTATGGCCATGTGACCACAGTTATAGATGTGTTATGACCTAAAGTTGTCTTTTTATGGGTGATCAAATAGCTGAGCTCATCAGGGCTGATTCAGACACTACAGGATGTCAATCCCACAGACTTCCTCTAAGCCTCATGCATTTCCTGTTCcattgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaattaccTGATTTCATCTGGTGCTAATATTAGACGAATAGTCATTAAATTGTGTATAAAATGTCATTTGTAACATGCTTGAAAATGCAAGAAAAGATGGCTGCTGGTTGGCAGAAATAATTATTTGGTTTTATGTTTTTATACTTTTATACTCAACTATGTATTGTGCTGGTGCTAAGTAACAAGTAAGTAACCATGCATTTCCTGTTGGACGTAATGGTCCATTTGTCTGTATGAAAAGAAAGACCGATGCCTTTGCAAATAATGGTGTAAGTCCTTTGTTCATATGGCCccaatacaaataaagaaaccgATATTATAGTTTTGCTATTTTTACAGAAGGGCAGTAAGTTTAACGTTTGTAGTAATACTGCATATTCATTCATTAGAAAACATGTTGCGTGTGTAATGTATGCCTGCgtttgtgcaagtgtgtgtgggtgtgtttcatCATGTACttaaagtgtgtgtgcgtgtgtttcaaGACAGAAAGTCTGGCAATAGTTAGGTGTTTTTTTGGGTAGACCGGGTGGAGTACCTCCAACACTCAGGCCTGATCAGCTCTACACTCCAAGCCTGTCAACAGTGTGTTACCATAACAacagcagacacagacagacatatagaccaGGAAACACGGTCTGAGATATGAAACAGAAACAGCATAATCCACTTCAATATCCTAGTTGTTTAAGACTGATATGTTACTTAAGTTTTTGTTAAACTATAGTGGATTGGGCCTGTCCCCTACTGATAGTAAATAAAAGTCATCACTATTGACTTTGACTAGTTCTTGGCCCTCTCACATCCATTTTCTTTCACTCAACCTGCTAAAGCTAAATTACAGACGGGTAAATAAATCTGTGATCGCTGACCTTTGACTCATTCAATCAGGGTGCCTCAAACTGTCTTCAGTTCCAGAAGATATCGCTAGGGGGCAGACTATAACCATTCGTCTGACAGGCCTATTAGATCAAATGACATTTTCTCCTGATGGAGGCAACCGAACTTGAGTAAAAATCACAATAAGATACCAGAGAATAAGTGCTTTTATTTTCGTATTAGGTTTATAGCGATTGTCAATATctgt
>TU1792187
TCACATCCATTTTCTTTCACTCAACCTGCTAAAGCTAAATTACAGACGGGTAAATAAATCTGTGATCGCTGACCTTTGACTCATTCAATCAGGGTGCCTCAAACTGTCTTCAGTTCCAGAAGATATCGCTAGGGGGCAGACTATAACCATTCGTCTGACAGGCCTATTAGATCAAATGACATTTTCTCCTGATGGAGGCAACCGAACTTGAGTAAAAATCACAATAAGATACCAGAGAATAAGTGCTTTTATTTTCGTATTAGGTTTATAGCGATTGTCAATATctgtacaaaaaaacaaaaaaaaaaacacatcacaATACAGACACAGAAGGATACAtagatacaggtaacaggttatAGGCCAACGTACTGTGTGAGCCTAGTTTACAAGATAAATACACTGTAGGAAACTAGTAAGTGCTTTACAGAGGTTAAACAAAGGGCCAGGAGTTATCTTGGTCAAGTGACATGGTCAAGGAAAACTCTGGGCCCAACTTAATGTATGTACAAACATTGTAGTACTTTCAAAGGGAAAAGAGGCTTTGCATTACATTGTTACAAAACAAGGGCATCCTATTCATAGGACTTGATATAAATTTGTATAAAATGTACATTTGTATTAGTTTTCGTTCACGTTCTGCATTTCAGAGAGGCCTATGTTATACATACaaccatacacaaacacatacgcaATGTAGTAACATTATTTAGTCATGGTTAGAGCCAGGAGTTTAACCTGACCCAGTGACCTGACTAGGTAAAACTCTGGTCCATAGTAACAGGCTATTTTTAAGCCCCAGAGTTGTTCCTGGAGAAACTCCTGGTCCTAGTCATGGTGTAAGTTACAAGACCCAACTCCGACGCattcaaaaaaaataataatactgccACTAAGAAAAAGGTGATATGATAACAAGTATGTTTGCAGACACACAGCCATGAAGCAGTCCTGGAATAGATAGCACAGTACTTGTCTGATTTCCCACTAACTGAGACACATTGGTCGACTGATTCCCCCAGACACAATACGATCCAGTTCACAGGTGACTATGACCACacagttagagagacagagactagggttgcaaaaacactggtaactttcccaaaatgcacaggttttccagaaatcacggttgggaaagttaccagaattttgcaaacCTACCGGAGATGTAAGGCTTATAGAGACCAGTCCAGTTCGTCTATACATGTGTCCATAGAGGCTAGGAGACCAGGAGAGGGAGCCATTTAAGACTAATGAGATGCACCCACCTAGGGTTTAATCACTGATTCCAGGAAGTTGCCTCTAACCACAGATCAAGGA
>TU1792245
GTACAACTTTTTAACTACAGATTTTTTTTGTAGAAATGCACCATTTTCACACGTTTACACTAGTAATGTACTGGAGATGATGAAAATGAGGTTGAAAGTGGAGTGCTGGAGTTGCcgtgactgtaagtcgctctggataagagtgtctgctaaatgactacaatgtgACCATGTAAATGCATGTGGTGCATGTGCACAACTggctgggtgggtgtgtgtgaccACTATTTTAGGACAAATCTGCAACCTTGTCTCCAGAGTCAGTGCTGATGTAGGATTTACTGCAATGTTCTTTCACTCTGGTCTTCTACAAGATGTTGTGGTTACATTGCAAGTGTATCCAGACCTCTTGATTCAAGCTGTGGGGCACTAAAGACTGCctgtgtaaacgcagcctataGAGGAAGCAACCCTCTTACACACAGTAGGCAGCATTACagtcagcctggtctcatagactagacgtaacatagtaaatgtaaatccgggactctcaaattagtatgatatgttacgtttggtatggttacataataATGAAAGTAGGATAGTTGGGTTGGTGTATAACacaaatgtctagcaacccaaaggttgcatgttcaactctcatcatggacaactttaaaATTTTTGCTAATTAGCACCTTTACAACTACTTGCTACTTAGAATGTTagctaatcttaaccctaaccttaaccctttaacctaactcctaaccttaaccctttaatttaactcctaaccgtaaccctttaatataactcctaaccttaacccctagcctagcgaATGTTAGCGTTAGCCATATAGTTAACGTTGGCCACAACAACTTGGAATTTGTAACAAATTAAAACGTATTGTACGAATttcaatttgtaacatatcatacaaattgtaaaTCATaacatcatacaaaatggatgatggacatccacaaattaatacataggAAATGTATCATATACTATTTGGAGGGAtgcatttactatgttacgtcgaCCCCTGTGCCCAGGTTGACAGTATACAGACTAGACTAACCTACAGCCTACAGTCTAatctacagtccactacatggcTCACTGCACTGAACCCTGACTACATATGCTTTGTACCCAGCCTTTCAAGTAGAGATCCTAATCAAAGATTTGGCACCCCGCCTCTGTAGTCTTAACACAGGCACCATGACCTGAATTCCTCTTGCATTAATGTGAACCATGTGTGTTTGAGCCCCAACCCTCCCCGAGGTACCACTGACCAGCCATCTTGAATACATTGGTGTTCATTGATGATGGCATGGAGGTAAATGACTGTCTGCAAGCATTTTGAATTCTAGCAGTAACACACCGAATTAAGTGTTTTTCTTCAGTGCAACATTTGAGATCCAGTGGAATGAGAACGTTTTCTTTTACTGTCTTCCTCTGGTGCTAGGCCTATGCTGTCTGGAGATATCCATTATGCACTTTGAAACGTGTGCGAGGAGGGAGTCCAAGACTGAGTCACTCAGTCCGGGATCCCCCGGGGGACCCTCGTGGGAAGGAAGGCTTCCCGTCTGCTTTCTCCATACCGAGTATCGAATCTCACCTCGCGAGCCATAGGGGGTGCGGGGGCACGCGGAAAACTCGGTCAAAGGGTTCAGCcacgtatctctctctctctctctccatgcctcgAATACAACAAGATACCGTATATGCGTCCTATCTTCCACGCATTTGATTAGATTTAGAGGACGCGTGTTTGTGTGCACGCGCAGCTCTGAATTCTGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572552.2 False 6057 mRNA 0.47 1 57419947 57426003
TU1792187 False 1329 lncRNA 0.40 1 57418906 57420234
TU1792245 True 1769 lncRNA 0.43 2 57425634 57427510

Neighbor

gene id symbol gene type direction distance location
LOC110496580 LOC106588863 coding downstream 46155 57336342 ~ 57373792 (-)
LOC110496951 NA coding downstream 135557 57279066 ~ 57284390 (-)
LOC110496578 hoxa13 coding downstream 271668 57146149 ~ 57148279 (-)
LOC110496576 hoxa11ab coding downstream 285152 57131465 ~ 57134795 (-)
LOC110496574 hoxa10ab coding downstream 289716 57124127 ~ 57130231 (-)
LOC110496865 LOC106588853 coding upstream 70636 57496639 ~ 57567805 (-)
LOC110496583 LOC100380778 coding upstream 151410 57577413 ~ 57580463 (-)
fam221a fam221a coding upstream 173285 57599288 ~ 57628309 (-)
LOC118941192 NA coding upstream 226771 57652774 ~ 57656815 (-)
LOC110496588 LOC106588875 coding upstream 273111 57699114 ~ 57715653 (-)
G1566553 NA non-coding downstream 24504 57392943 ~ 57395443 (-)
G1566547 NA non-coding downstream 32306 57387406 ~ 57387641 (-)
G1566546 NA non-coding downstream 32904 57386800 ~ 57387043 (-)
G1566539 NA non-coding downstream 42427 57377310 ~ 57377520 (-)
G1565893 NA non-coding downstream 150308 57269338 ~ 57269639 (-)
G1566568 NA non-coding upstream 13675 57439678 ~ 57441583 (-)
G1566579 NA non-coding upstream 24923 57450926 ~ 57451532 (-)
G1566620 NA non-coding upstream 92137 57518140 ~ 57518694 (-)
G1566645 NA non-coding upstream 158080 57584083 ~ 57584406 (-)
G1566660 ccdc126 non-coding upstream 204732 57630735 ~ 57631601 (-)
LOC110496560 LOC106588840 other downstream 682600 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 931658 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2754304 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2767097 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3524998 53887137 ~ 53895002 (-)
G1566899 NA other upstream 601508 58027511 ~ 58027790 (-)
G1566923 NA other upstream 649620 58074209 ~ 58078146 (-)
G1566972 NA other upstream 741381 58167384 ~ 58167697 (-)
G1567080 NA other upstream 984496 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1443360 58869363 ~ 58870007 (-)

Expression


Co-expression Network