LOC118941191 (LOC106588856)


Basic Information

Item Value
gene id LOC118941191
gene name LOC106588856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57480504 ~ 57495218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953333.1
gtggtgtggtggcaGCAAAGTCCGCTCTCCCCGGTTTACAGAAGTAGGACCCAACCCACTCTGTCTGACTGATAACTCTCTGCTCCAATCGATACCATAAAAATCTTCGGACAGCCTATAGTGTCGTTGTGAGTGTGTAGCGGTACTCATTTcaacataatgtaaaataatcCATAAAGTAGCGGGGTTATTATCAATAGTCTACTATCTGTGTAACGGAGCACAACAGTTTAAATGTGAATTGCTAAGAACAGGGAATTTGGATAGTTTGACATTTTCTTGCGCTGCTGTTTGGAGTGACTACGGTGAGTTTTACGCGTGCCAGAACCGACATTCCAGAAGTGACAGGCCACGGGACTGGTGCTTTTTTGGAGGCGCTACACGCGATCCTTGTTATCATTCCAGACTACGAAAAGGTGTTGGGCCCTGCCTCTTCATAGGTGATGTTTGCCAAGGCAACTGCAAAATTTGTTCGTCAGATCGACCCAGATGGAACCCTGATCTCGGTCTCCCGCCTTAATGACTCAGACAAGTTGGTTCCCATGGCGCTGGTTGTCAAGCGCAACCGTTTCTGGTTCTGGCAACGACCCAAGTACCTGCCATCTGACTTCACACTCAGTCACCTGTTGCTAGGAGACAAAGAACTCACTCCAGACGTGTCTGAATCAGACTTCCTGTCCTATGAGGGGAGGTTTGGAGACAACCTGAGTGGAAAGCTGGATGCCAAGGCTGGATCCatcagtgtcaatgtggaggggcGGTGCTCCTCAAAGCTCCAATTATCATTCGGCAAGCTGAAAAAGCAAGATGTTGATGTACAGAAGCTACTGCTGGCCTCCAatgacagGGTGGTGGACATGCAGCATGTGCTGGTGCAGCAGAGTCAGAAGCATGCAGAGGTGTTTGCTGTGTTGAAGGAGAGGATCCTGACCACCACCCCCTGCTCCATCTCAGAACAGGTCCAGGAGCAGGGCACCTGCCAGGGGGTTCTGGGACTACTGGGCAAACTGGGGACACACTCTGTAAAGGTGTGTGTGCAGGAGAATAGCGGTATAGAGATGGACAGTGACGTTTCCTTGGAGATTCCACCTCTCACTGTCATCGCCTACAGCCTCATAGAGCTAGAGGTCAGGAAAGACGGACACTATGAGCTGTGTCTACAGCATGGTACTCTTGGAGGATTCGAGGCAGACTCTGGGAAGACCTCGCCTTCCCAGGATTCCTTTGATACTCTGTGTGTTGTGGACGGGCTGGAGTGGGCGGAGGAGATTCCTGAAGGAGCACCACTCAGCGCACTGCAGAaaaACTTGCAGGACTTGGAGGTCTATCTACATCAGTTAGTGGTTCTTCCAGAGTCTACCCGGTCCACTCTGTTCCAGAGACTCTGTGAGGTTCTAGTGGACAGAACCACACTCACGGTTCTGGAACACACGttgGAGGGGTTGTGTAGAGGTGAGGACCTTGACCCTACAGAGGTAAAGGAGTTGTCTGTTTCTCAGATCAAATCTGTCTCCGCCCTATCGGACCTGGTCCAGAAATTCCCACCAAATGAGATACAGGCTGAAGgaacctccatccccctccatctGACTGCCACTCACCTGCTGGTTAGCGCCTTGGaggCGTTGCCTGATGCTGCTCTGACTCTGCTGGGAGAATCTAGCCCTGATGTCCTGGAAGCCCTCAATACTCTGCTAAAGGTAAATGGTCAGTCCCTCTCCTTTGAGTCACTGCCCCTCCCCTTGCAGGAAGAGGGGGCATTCCATTGGGCAGagcagctcctcctctcctccaatgTGATGCTGCGGAGAGAGACTGACAGGCTGTGGGCAGAGACTGGAAAAAAGCCAGGAGTGTTTCCATTGGTCATGTGCATCGCTGTGCAAGGACTTACATCTCTGTACACTGGGAAGGGGTAGGATGTGTGTGCATGGATCAGTATGTTTCAAATATTACATTTTGTGTGAAACTCCAGTGTTTCACTTGTGTGTTTTCCAAATATGCACTCAATGAATTCTGTATTTTTGGTGGcactaacattttttttttacaaactaaTTCTCAATGTAACTGTTTGAATTTGAAAAGCTGTAAAACAATCCACTCCAGAATATGAAGTAAGACCTGTGTTCGAAGAAACACTTTTCAAAAGCTGGACAAGCAGACTTCACCTTACTGTGTTTGGAAAGAAACGCCTCAATCTCAATACACTAAAATGTTGCTCTGACACCCTAGTATTTCACGAAACCTTTACATTCTTTCTGCATGCTCATACAGATAAAACGTGTATACAGAAGATTTTGTTATTTCAAAAgagaaatgtacagtatatgcttaTTTTAATATATAATGTTgcttaaatgacattttaagctatatgtaacctacagtaccagtcaaatgttgacacacctactcattcaagggtttttctttatttgtatattttctacattgaataataatagtgaagacatcaa
>XM_036953334.1
gtggtgtggtggcaGCAAAGTCCGCTCTCCCCGGTTTACAGAAGTAGGACCCAACCCACTCTGTCTGACTGATAACTCTCTGCTCCAATCGATACCATAAAAATCTTCGGACAGCCTATAGTGTCGTTGTGAGTGTGTAGCGGTACTCATTTcaacataatgtaaaataatcCATAAAGTAGCGGGGTTATTATCAATAGTCTACTATCTGTGTAACGGAGCACAACAGTTTAAATGTGAATTGCTAAGAACAGGGAATTTGGATAGTTTGACATTTTCTTGCGCTGCTGTTTGGAGTGACTACGGTGAGTTTTACGCGTGCCAGAACCGACATTCCAGAAGTGACAGGCCACGGGACTGGTGCTTTTTTGGAGGCGCTACACGCGATCCTTGTTATCATTCCAGACTACGAAAAGGTGTTGGGCCCTGCCTCTTCATAGGTGATGTTTGCCAAGGCAACTGCAAAATTTGTTCGTCAGATCGACCCAGATGGAACCCTGATCTCGGTCTCCCGCCTTAATGACTCAGACAAGTTGGTTCCCATGGCGCTGGTTGTCAAGCGCAACCGTTTCTGGTTCTGGCAACGACCCAAGTACCTGCCATCTGACTTCACACTCAGTCACCTGTTGCTAGGAGACAAAGAACTCACTCCAGACGTGTCTGAATCAGACTTCCTGTCCTATGAGGGGAGGTTTGGAGACAACCTGAGTGGAAAGCTGGATGCCAAGGCTGGATCCatcagtgtcaatgtggaggggcGGTGCTCCTCAAAGCTCCAATTATCATTCGGCAAGCTGAAAAAGCAAGATGTTGATGTACAGAAGCTACTGCTGGCCTCCAatgacagGGTGGTGGACATGCAGCATGTGCTGGTGCAGCAGAGTCAGAAGCATGCAGAGGTGTTTGCTGTGTTGAAGGAGAGGATCCTGACCACCACCCCCTGCTCCATCTCAGAACAGGTCCAGGAGCAGGGCACCTGCCAGGGGGTTCTGGGACTACTGGGCAAACTGGGGACACACTCTGTAAAGGTGTGTGTGCAGGAGAATAGCGGTATAGAGATGGACAGTGACGTTTCCTTGGAGATTCCACCTCTCACTGTCATCGCCTACAGCCTCATAGAGCTAGAGGTCAGGAAAGACGGACACTATGAGCTGTGTCTACAGCATGGTACTCTTGGAGGATTCGAGGCAGACTCTGGGAAGACCTCGCCTTCCCAGGATTCCTTTGATACTCTGTGTGTTGTGGACGGGCTGGAGTGGGCGGAGGAGATTCCTGAAGGAGCACCACTCAGCGCACTGCAGAaaaACTTGCAGGACTTGGAGGTCTATCTACATCAGTTAGTGGTTCTTCCAGAGTCTACCCGGTCCACTCTGTTCCAGAGACTCTGTGAGGTTCTAGTGGACAGAACCACACTCACGGTTCTGGAACACACGttgGAGGGGTTGTGTAGAGGTGAGGACCTTGACCCTACAGAGGTAAAGGAGTTGTCTGTTTCTCAGATCAAATCTGTCTCCGCCCTATCGGACCTGGTCCAGAAATTCCCACCAAATGAGATACAGGCTGAAGgaacctccatccccctccatctGACTGCCACTCACCTGCTGGTTAGCGCCTTGGaggCGTTGCCTGATGCTGCTCTGACTCTGCTGGGAGAATCTAGCCCTGATGTCCTGGAAGCCCTCAATACTCTGGAAGAGGGGGCATTCCATTGGGCAGagcagctcctcctctcctccaatgTGATGCTGCGGAGAGAGACTGACAGGCTGTGGGCAGAGACTGGAAAAAAGCCAGGAGTGTTTCCATTGGTCATGTGCATCGCTGTGCAAGGACTTACATCTCTGTACACTGGGAAGGGGTAGGATGTGTGTGCATGGATCAGTATGTTTCAAATATTACATTTTGTGTGAAACTCCAGTGTTTCACTTGTGTGTTTTCCAAATATGCACTCAATGAATTCTGTATTTTTGGTGGcactaacattttttttttacaaactaaTTCTCAATGTAACTGTTTGAATTTGAAAAGCTGTAAAACAATCCACTCCAGAATATGAAGTAAGACCTGTGTTCGAAGAAACACTTTTCAAAAGCTGGACAAGCAGACTTCACCTTACTGTGTTTGGAAAGAAACGCCTCAATCTCAATACACTAAAATGTTGCTCTGACACCCTAGTATTTCACGAAACCTTTACATTCTTTCTGCATGCTCATACAGATAAAACGTGTATACAGAAGATTTTGTTATTTCAAAAgagaaatgtacagtatatgcttaTTTTAATATATAATGTTgcttaaatgacattttaagctatatgtaacctacagtaccagtcaaatgttgacacacctactcattcaagggtttttctttatttgtatattttctacattgaataataatagtgaagacatcaa

Function

NR:

description
non-syndromic hearing impairment protein 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953333.1 False 2480 mRNA 0.47 10 57480504 57495218
XM_036953334.1 True 2426 mRNA 0.47 10 57480504 57495218

Neighbor

gene id symbol gene type direction distance location
LOC110496582 LOC106588858 coding upstream 4105 57441377 ~ 57476399 (+)
LOC110496864 LOC106588860 coding upstream 60499 57390771 ~ 57420005 (+)
tax1bp1a LOC106588861 coding upstream 144222 57292750 ~ 57336282 (+)
LOC110496950 LOC106588852 coding upstream 312511 57163125 ~ 57167993 (+)
LOC110496577 NA coding upstream 339881 57137204 ~ 57140625 (+)
LOC110496585 LOC106588871 coding downstream 133219 57628437 ~ 57632714 (+)
tra2a LOC106588872 coding downstream 147467 57642685 ~ 57648819 (+)
LOC110496587 LOC106588873 coding downstream 161847 57657065 ~ 57694865 (+)
LOC110496589 galnt15 coding downstream 234726 57729944 ~ 57742687 (+)
oxnad1 oxnad1 coding downstream 249031 57744249 ~ 57760416 (+)
G1565938 NA non-coding upstream 39264 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 50719 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 93802 57379653 ~ 57386702 (+)
G1565906 NA non-coding upstream 154521 57325583 ~ 57325983 (+)
G1565927 NA non-coding upstream 161557 57317522 ~ 57318947 (+)
G1566024 NA non-coding downstream 24820 57520038 ~ 57520867 (+)
G1566109 NA non-coding downstream 160055 57655273 ~ 57655494 (+)
G1566158 LOC106570535 non-coding downstream 273168 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 326392 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 351611 57846829 ~ 57849957 (+)
LOC110496571 hoxa7aa other upstream 368541 57109128 ~ 57112335 (+)
G1565672 NA other upstream 448541 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1311301 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1428711 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1571570 55908085 ~ 55908934 (+)
LOC110496591 LOC106588881 other downstream 356003 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 421397 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 445879 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 869038 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1375681 58864013 ~ 58873692 (+)

Expression


Co-expression Network