LOC110496583 (LOC100380778)


Basic Information

Item Value
gene id LOC110496583
gene name LOC100380778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57577413 ~ 57580463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572557.2
AAGATCTCTAAAACAACTCAAAAGTAAATGATAATTGAATTTATATTTCAATGAGTTCCCTCTCTTGTTGAGGGTGCACATCTCAGTGTCCTGTCATCAAACTCCCAGTCCATCCTAATCATCACGTTATAAATTGGTCTTGGATCTGTGCCATGTCGCTTCAACCCAGTTTATTCCACTCCAGAGTGAAATGTATTCgtttgagagagagaacaaattaCATTAATTTCCGCTGCTATTGTGATTTTTTTCAATCAATCATAAATGTTGTTTAAAATGTGTGATGACAGCTTACAGTGACGTGTCTGTCCGTGCACCTTTCCGGAATGGTGATTTGGAGACTTTTTTTCACTCGCCCTGCCCATCCTTGCACTGCGCGTTATAAAAATCGCGCCCCATGAGTGGGTACCCTCCAGTACGCACAGGAGCAGATAACGCCTGAGGACAACTTCTACCTAAACCATCCTCTAAACCCTCAACTCAATATGCATCCTAACTTGGGTACTTGGCTGGGCGCACTGACTCTCCTCGCCTGGACCTTTATATGCATCGGGACGCTCGCGGAAGGCTACCCGGTCAAACCTGAAAACCCCGGCGAAGATGCGCCGGCAGGGGAACTTGCCAAGTATTACTCCGCTCTCAGACATTACATCAACCTCATTACAAGGCAGAGgtatgGGAAGAGGTCCAGCCCTGACACTCTGGATTCACTGATCTCAGAACTGCTGCTAAAGGAGAGCACAAATACGCTCCCACAGTCCAGATATGATGAACCGTTGTTGTGGTAACCGTGTCACTGTTTCCGTCCAGCACCCTACCATCGCCACAACGATATACTGACCTCAACAACACGGCCGCCTCACCATGGCCGATACCCCATCCTAACAACCCCAGCTAGCACCATACATCCCGCTCTCCCCCATCCAGAGGCTACTCCTGTGCCAGATAACTAACTGCATATGTACAGAGTCTTATTTAAGTCACCCCTACATTGGTAAGTCAGGGGAGAGAATTATTGATTGTATGGTAAAACTGTGCTATTAAATATTCATTATTTA

Function

NR:

description
pro-neuropeptide Y-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05232 NPY; neuropeptide Y

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572557.2 True 1058 mRNA 0.46 4 57577413 57580463

Neighbor

gene id symbol gene type direction distance location
LOC110496865 LOC106588853 coding downstream 9608 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 151410 57418906 ~ 57427510 (-)
LOC110496580 LOC106588863 coding downstream 203621 57336342 ~ 57373792 (-)
LOC110496951 NA coding downstream 293023 57279066 ~ 57284390 (-)
LOC110496578 hoxa13 coding downstream 429134 57146149 ~ 57148279 (-)
fam221a fam221a coding upstream 18825 57599288 ~ 57628309 (-)
LOC118941192 NA coding upstream 72311 57652774 ~ 57656815 (-)
LOC110496588 LOC106588875 coding upstream 118651 57699114 ~ 57715653 (-)
rftn1a LOC106588880 coding upstream 186037 57766500 ~ 57812891 (-)
dazl dazl coding upstream 242270 57822733 ~ 57831166 (-)
G1566620 NA non-coding downstream 58719 57518140 ~ 57518694 (-)
G1566579 NA non-coding downstream 125881 57450926 ~ 57451532 (-)
G1566568 NA non-coding downstream 135830 57439678 ~ 57441583 (-)
G1566553 NA non-coding downstream 181970 57392943 ~ 57395443 (-)
G1566645 NA non-coding upstream 3620 57584083 ~ 57584406 (-)
G1566660 ccdc126 non-coding upstream 50272 57630735 ~ 57631601 (-)
G1566667 LOC106588871 non-coding upstream 51314 57631777 ~ 57633115 (-)
G1566683 NA non-coding upstream 62276 57642739 ~ 57644028 (-)
G1566685 NA non-coding upstream 66571 57647034 ~ 57648817 (-)
LOC110496560 LOC106588840 other downstream 840066 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1089124 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2911770 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2924563 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3682464 53887137 ~ 53895002 (-)
G1566899 NA other upstream 447048 58027511 ~ 58027790 (-)
G1566923 NA other upstream 495160 58074209 ~ 58078146 (-)
G1566972 NA other upstream 586921 58167384 ~ 58167697 (-)
G1567080 NA other upstream 830036 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1288900 58869363 ~ 58870007 (-)

Expression


Co-expression Network