fam221a (fam221a)


Basic Information

Item Value
gene id fam221a
gene name fam221a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57599288 ~ 57628309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572559.2
TGTTTCGCCCATCAAGCAAGGAGTTAGGGGGTAAACAGAGGACAAAAGGGTGGACAATCTCGAAGAAATtcgtttttgtatggaggtcagtGAGTTTAGAATTTGGTCAACGAAAAAAACTGTTGCTACGTGAGATTTATATGATCGATTAGAAGTTTCACACGGCTTAAGCTGTTACAAGTTACTGATATatgtaggacacgtgacatcccgggCAACTTTTagaaaaaaacactttatttTGGAGTTGTCTTGAGttggctatgcatattcatgtcATGAGGCCAGCATCTCTGTCCATTGTTTACAGGTGGTTAACGTTAACAACCCTCATCGAATATTTACAATACAGAAGTTACCACCAAACCAAAGAAAGGATAGGCGGGTGCTGGACAGGCCGCCGTGCCGCTTTGTGAACAACGACTCCCTAGGGCGGAGCGACGGTTTATAACCTTTGGTGAAATTGACCAAATACTATAGCGGCCGCTCTTAACAATGAAAATAATGGAAGACAGTTTggaggaggcaagatcaggtgggaccattccagccaatgagagggcagatacgcaGGACCACgacggtttccactagttaccacagccacaaagtagaACATATTTAAATTTCACGAAAACAAAAATTAATTCATCCTCGTGGCAATATTGGGGAAAACAACTAAAACAATATCTTAcaaacattattttttatttgctGATTGTAATAATTTTGGAAAGGAATGAATGGATGGCATATGTCCCACTGAAAGAATAAACCAAGGACAAGGTTCCCGCCCACCAGCCTAaagcaagggagagagaaagggaagggggagaaTGGTGCAGATCGCTTAGCAACGTGGACGCTTGGTCCTCAACCGGATACGAGCACAGGACTTCAGTCGAAAAGCTGAAGGATTTTACAACATCTAGCTAAAACCTAGCTAAAACAGTATCTCAAAACTTGAGCGATGGAGAGAATATGTCTTGACAAGACTGCATCTAAGGCAGTGGACGACTATCTGGAGTACAGGAGGATCGTGGGTGAAGACGATGGCGGCAGACTATTCTCCCCAGAGGAATATGAAGAGTACAAGAGAGCAGTGTTTCCCCAGAGACTACACAACAGGCTGTATGTGAGCTTTGGAGTGCCAGGGGGAATAGACTGTAAACTCATCGGCCCAGAGACACCTTGCTTCTGCACACACAGGTACAAACAGCATCAGACAGACTTTGAGGAGGTTCCTTCGGAGCGCCCGATAGCACTACCATGCCGAGTTCAAGGGTGTCGGTGTTTGGCCTTTCAGTACGTGCACCTGAACGGGTCGCAGCCTGTACGTTGCAGGTGCAAACACTCTGCCTATGACCACAGTGAGACCTCAGAACACCTCTGTGGGAAATGCTCATCCTGCTCTGGGTTCCGGAGCCCCTACAGCTGTGGGTGTGGCCAGCCTAGCTTCGCCCACCAGACGCTGGTCGAGACGAAGGCAGAACGGGAGGCCCGGGGTTGTCCGGTGGGCAGAGACGTTCCATACGCAGCCATGGGGGGTCTGACAGGGTTCAGCTCCCTGGCTGACGGGTACCTGAGACTGGACGATAGCGGGGCAGGTGCCCCtcacctgtctgttctgtcatcTCAACAACCAAGAGCTTTCCAGGAGCATGTGTTTGAGAAAGCCTCAGGACCAGCAGCAGCCTCAGGACCAGCAGCAGCCTCAGGACCAGCAGCAGCCTCCGGACATACAGAGGAGAGTTCAGTGACGTCCGTGACCAGGGCTCTGTCTGACCTCAGCACCAGAGAGGAAGAAGACATGGCGTACTTGGAGAGACGCTACCAGGACAGGATGAAGGCTGAGAAAATGGCAGTCAAACAGAAGGCATCATCATCAAGAGGAAGACCATCCACCAAACCAGCCAGCCTACCATCCACCAAACCAACCACCTCCCTATGCAGTAAGCAACCTACCAAACAGCCTACCAAATAATTGACCAAACTGGAGAAGAGGACGAACAGTTAGCTAACACACTTAGTTTAATGAGGCATTCCATTCCACACAGATAATGATATAATTGCACTATGGATAATAGATAATCAAACAGTCCCACCTGGGAAAATGATCATTAGATCATAAACATCAAGGCTTTTGTGATGTTTCCAAGATCAATTGACAATAAATGTTCAAATCCACCTTCCA

Function

symbol description
fam221a Is expressed in habenula and peripheral olfactory organ. Orthologous to human FAM221A (family with sequence similarity 221 member A).

NR:

description
protein FAM221A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572559.2 True 2194 mRNA 0.48 7 57599288 57628309

Neighbor

gene id symbol gene type direction distance location
LOC110496583 LOC100380778 coding downstream 18825 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 31483 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 173285 57418906 ~ 57427510 (-)
LOC110496580 LOC106588863 coding downstream 225496 57336342 ~ 57373792 (-)
LOC110496951 NA coding downstream 314898 57279066 ~ 57284390 (-)
LOC118941192 NA coding upstream 24465 57652774 ~ 57656815 (-)
LOC110496588 LOC106588875 coding upstream 70805 57699114 ~ 57715653 (-)
rftn1a LOC106588880 coding upstream 138191 57766500 ~ 57812891 (-)
dazl dazl coding upstream 194424 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 210410 57838719 ~ 57848361 (-)
G1566645 NA non-coding downstream 14882 57584083 ~ 57584406 (-)
G1566620 NA non-coding downstream 80594 57518140 ~ 57518694 (-)
G1566579 NA non-coding downstream 147756 57450926 ~ 57451532 (-)
G1566568 NA non-coding downstream 157705 57439678 ~ 57441583 (-)
G1566660 ccdc126 non-coding upstream 2426 57630735 ~ 57631601 (-)
G1566667 LOC106588871 non-coding upstream 3468 57631777 ~ 57633115 (-)
G1566683 NA non-coding upstream 14430 57642739 ~ 57644028 (-)
G1566685 NA non-coding upstream 18725 57647034 ~ 57648817 (-)
G1566688 NA non-coding upstream 22764 57651073 ~ 57651788 (-)
LOC110496560 LOC106588840 other downstream 861941 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1110999 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2933645 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2946438 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3704339 53887137 ~ 53895002 (-)
G1566899 NA other upstream 399202 58027511 ~ 58027790 (-)
G1566923 NA other upstream 447314 58074209 ~ 58078146 (-)
G1566972 NA other upstream 539075 58167384 ~ 58167697 (-)
G1567080 NA other upstream 782190 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1241054 58869363 ~ 58870007 (-)

Expression


Co-expression Network