LOC110496585 (LOC106588871)


Basic Information

Item Value
gene id LOC110496585
gene name LOC106588871
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57628437 ~ 57632714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572560.2
CGGTGACGCAGTACACACAAGACCGCTATTCGTCGCTCAGGAAACGGACTGTGCTCGAGACCGATTGCATTATGAACAAATTTCGCCTAGGCATGCGAACAATTATGCATTGCTACTCAATTTAAGGACAGGCCATTTATTTCAGTTGTAATGCTTAATATTATTGAGATATTAGATTCCGTGTCAgcagtgagctagctagctatctatcaAGCATCTTCTGACAGTGACATTTGTCTCTGCCTTGTGCTGTGTTCTCCTTCTTGGAATGGGATCGCAGACTGATGTTCCGAACAGCTTAGTGATTCAAACGAACAAATCCAGatCCTCCGTCTCTGAGTGACGCAGCTATGTATGTGTTTGGGCCCCATGGTTGACTGCCaggtgtgtgtagtgtttttaTTCCCCGTGCTCCTCCATAGCCAACCCCAGCCCAATATCCCCCAGCCCCATATCCCCCAGTCCAAAGCCCTAGCCCCATATCCCCCAGTCCAAAACCCTAGCCCCATATCCCCCAGTCCAAAACCCTTGCCCCATATCCCCCAGTCCAAAACCCCAGCCCCATATCCCCCAGTCCTAGCCCCAGCCCGCTTAACCCTGTATCAGAGTATTTTGCTTGAACTATCCCCTGTCTACGTCCTAGCCCCAGCTCCAAACCCGTGCCCGTTTTCCCCTAGAtccttctccttcctttcctcacACCAGCCCCCTTGCCCATTCAATTCAAATCACCCACTTCCAGACCTAGCACCAGCCCCACTCCCAACCCTGTTCCCCCAGCCGCACACTCTATCCGCCAGCCCAACACTCTatcccctacccctctctcctggcCCACCACCATCTATCTCCAGCCCACGTCCAGCCTCCATACCATGCTGGGGAGAAACATGTCCCAGAAGCTGAGTGGGCTGCTGATAATCTTGGGGCTGGCGTGGGGGCTCATGTTGCTGCGCTACACCGTGCAGCAGCCGCGCCACAAGAGCAGTGGCGAGCTACGCCAACAGATCCTGGAGCTGAGCCGGCGATATGTCAAGGTGCTCAACGAGGAGAACCAGAACACACTGGGAGGACCGCAGGGCCCCTCCATGGCCGGTTATGctgatctGAAGAGGACCATAGCAGTGTTGCTGGACGACATCCTGACGCGCCTGGTCAAGCTGGAGGGGAAGATGGAGCTGGTCGCCAACACTTCAGCCACTAACTCCTCCCATCCTGCAGCAGGCTCCCTGGCCTCAGCTCCAGTTGCCTTACACAAGCAGGACACGCCAGGCAACCACCGCCTGGAAACACCTCGCCTCCCTCCACAAACACCCAACAGACCTCGCCCAGGGATCAGTGATTAGCTCATGGGAGGAAGAAAAGAGTGAGGATGTATTCTAGATCATTTAAAACTAACCTAACCCTGAGAAAGGACTGACTGCCTGTACCTTTCCAATAACTACTTGGCTGATTGACATTTTTTTACATAGACATTTGAGCATCTTTTTTAATACTCTCAGTCATGGACTCTTAGGCATACATTTTAGATTCCCTAATTGTTTTTTCATGAAAGGGTCTACAAACTGCGGCTGTCTTTGAGGATGTCTATGGGCAACAACAAAGCATCAACAACAGTAGAGGAAATGAACAAATGTTTGTACTCTGTGGAGTCTTCAAGGAAGCTGATGATGAATATGAATGGCACAGCCACCCCGATATTTTATCCCTTGGACAGACCGACTACGAATTTGCTGTACTGCTTCTTTAAATCTCATCCATATCAGAAGTTGCTCAACTAAACAATGCACTCATGGTAGTTTTGGAAATTATGTATTTGAGTTTGCAGAAGCTCCTGGTGTTAATATGTAGATTTGAAGAGTCCCTTTTTagctgttttatatatatatatgtgtatatatatatatatatata
>XM_021572561.2
GTGACGCAGTACACACAAGACCGCTATTCGTCGCTCAGGAAACGGACTGTGCTCGAGACCGATTGCATTATGAACAAATTTCGCCTAGGCATGCGAACAATTATGCATTGCTACTCAATTTAAGGACAGGCCATTTATTTCAGTTGTAATGCTTAATATTATTGAGATATTAGATTCCGTGTCAgcagtgagctagctagctatctatcaAGCATCTTCTGACAGTGACATTTGTCTCTGCCTTGTGCTGTGTTCTCCTTCTTGGAATGGGATCGCAGACTGATGTTCCGAACAGCTTAGTGATTCAAACGAACAAATCCAGatCCTCCGTCTCTGAGTGACGCAGCTATGTATGTGTTTGGGCCCCATGGTTGACTGCCaggtgtgtgtagtgtttttaTTCCCCGTGCTCCTCCATAGCCAACCCCAGCCCAATATCCCCCAGCCCCATATCCCCCAGTCCAAAGCCCTAGCCCCATATCCCCCAGTCCAAAACCCTAGCCCCATATCCCCCAGTCCAAAACCCTTGCCCCATATCCCCCAGTCCAAAACCCCAGCCCCATATCCCCCAGTCCTAGCCCCAGCCCGCTTAACCCTGTATCAGAGTATTTTGCTTGAACTATCCCCTGTCTACGTCCTAGCCCCAGCTCCAAACCCGTGCCCGTTTTCCCCTAGAtccttctccttcctttcctcacACCAGCCCCCTTGCCCATTCAATTCAAATCACCCACTTCCAGACCTAGCACCAGCCCCACTCCCAACCCTGTTCCCCCAGCCGCACACTCTATCCGCCAGCCCAACACTCTatcccctacccctctctcctggcCCACCACCATCTATCTCCAGCCCACGTCCAGCCTCCATACCATGCTGGGGAGAAACATGTCCCAGAAGCTGAGTGGGCTGCTGATAATCTTGGGGCTGGCGTGGGGGCTCATGTTGCTGCGCTACACCGTGCAGCAGCCGCGCCACAAGAGCAGTGGCGAGCTACGCCAACAGATCCTGGAGCTGAGCCGGCGATATGTCAAGGTGCTCAACGAGGAGAACCAGAACACACTGGGAGGACCGCAGGGCCCCTCCATGGCCGGTTATGctgatctGAAGAGGACCATAGCAGTGTTGCTGGACGACATCCTGACGCGCCTGGTCAAGCTGGAGGGGAAGATGGAGCTGGTCGCCAACACTTCAGCCACTAACTCCTCCCATCCTGCAGCAGGCTCCCTGGCCTCAGCTCCAGTTGCCTTACACAAGCAGGACACGCCAGGCAACCACCGCCTGGAAACACCTCGCCTCCCTCCACAAACACCCAACAGACCTCGCCCAGGGGTATAGTAGTATCAGTGATTAGCTCATGGGAGGAAGAAAAGAGTGAGGATGTATTCTAGATCATTTAAAACTAACCTAACCCTGAGAAAGGACTGACTGCCTGTACCTTTCCAATAACTACTTGGCTGATTGACATTTTTTTACATAGACATTTGAGCATCTTTTTTAATACTCTCAGTCATGGACTCTTAGGCATACATTTTAGATTCCCTAATTGTTTTTTCATGAAAGGGTCTACAAACTGCGGCTGTCTTTGAGGATGTCTATGGGCAACAACAAAGCATCAACAACAGTAGAGGAAATGAACAAATGTTTGTACTCTGTGGAGTCTTCAAGGAAGCTGATGATGAATATGAATGGCACAGCCACCCCGATATTTTATCCCTTGGACAGACCGACTACGAATTTGCTGTACTGCTTCTTTAAATCTCATCCATATCAGAAGTTGCTCAACTAAACAATGCACTCATGGTAGTTTTGGAAATTATGTATTTGAGTTTGCAGAAGCTCCTGGTGTTAATATGTAGATTTGAAGAGTCCCTTTTTagctgttttatatatatatatgtgtatatatatatatatatata

Function

NR:

description
coiled-coil domain-containing protein 126-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572560.2 False 1914 mRNA 0.49 4 57628437 57632714
XM_021572561.2 True 1922 mRNA 0.49 4 57628439 57632714

Neighbor

gene id symbol gene type direction distance location
LOC118941191 LOC106588856 coding upstream 133219 57480504 ~ 57495218 (+)
LOC110496582 LOC106588858 coding upstream 152038 57441377 ~ 57476399 (+)
LOC110496864 LOC106588860 coding upstream 208432 57390771 ~ 57420005 (+)
tax1bp1a LOC106588861 coding upstream 292155 57292750 ~ 57336282 (+)
LOC110496950 LOC106588852 coding upstream 460444 57163125 ~ 57167993 (+)
tra2a LOC106588872 coding downstream 9971 57642685 ~ 57648819 (+)
LOC110496587 LOC106588873 coding downstream 24351 57657065 ~ 57694865 (+)
LOC110496589 galnt15 coding downstream 97230 57729944 ~ 57742687 (+)
oxnad1 oxnad1 coding downstream 111535 57744249 ~ 57760416 (+)
LOC110496591 LOC106588881 coding downstream 218465 57851179 ~ 57870361 (+)
G1566024 NA non-coding upstream 107570 57520038 ~ 57520867 (+)
G1565938 NA non-coding upstream 187197 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 198652 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 241735 57379653 ~ 57386702 (+)
G1565906 NA non-coding upstream 302454 57325583 ~ 57325983 (+)
G1566109 NA non-coding downstream 22559 57655273 ~ 57655494 (+)
G1566158 LOC106570535 non-coding downstream 135672 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 188896 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 214115 57846829 ~ 57849957 (+)
G1566267 NA non-coding downstream 340690 57973404 ~ 57976373 (+)
LOC110496571 hoxa7aa other upstream 516474 57109128 ~ 57112335 (+)
G1565672 NA other upstream 596474 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1459234 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1576644 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1719503 55908085 ~ 55908934 (+)
LOC110496592 LOC106588883 other downstream 283901 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 308383 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 731542 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1238185 58864013 ~ 58873692 (+)

Expression


Co-expression Network