tra2a (LOC106588872)


Basic Information

Item Value
gene id tra2a
gene name LOC106588872
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57642685 ~ 57648819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572562.2
GGCACAAAATTTGCAGTTGATAAACAAACTAaaaacttccgtcctcctccgcCATCTTCCACCACGAGAAAGAGCAGAGAAGCGCAAAGGAGGACACTGTATTTTGTCtggaaacgttagctagctcactAGCTATATCGTTAATCTCTTTGCAAAATGAGTGACATTGAGGATGGAAACTTCGATGGACGAGGCTCTCGCTCCCCATCCAAATCGGACCGTGGCAGTCCTGTCCGGGTCAAGTCAGAGAGCAGATCCGGCTCCGCGAGCCCATCAAGGGCCGCCAAACACTCAGAGTCTCGGTCCCGCTctaagtccagGTCTCGCTCTCGGAGGCACTCCAACCGCAGGTACAGCCGCTCTCGCTCCCCCTCCAACCGGAAGAAGTCCCGTTCCTACAGCCCGGAATACCGGAAGAAGAAGAGCCAAAGCGAGTCACCTAACCGCCGCCATACCAGCAGCAGAAGCCATGACTTCAGAAAAGAGACATTCGGTCAGGGAGCAGGAGGTGATGAGGATGCCAGGGCGAACCCTGACCCCAACCAGTGCCTGGGGGTGTTTGGGCTGAGCCTGTACACCACGGAGAAGGACCTGAGGGAAGTGTTTGGCCGGTATGGCCCGCTGGCCGGGGTTAACGTGGTGTATGACCAGCGCACCGGGCGCTCCCGAGGCTTTGCCTTCGTCTACTTCGAGAGGATTGACGACTCCAAGGAGgcGATGGAGCGTGCCAACGGTATGGAGCTGGACGGGAGACGTATCAGAGTGGACTTTTCCATCACCAAGAGGGCCCACACCCCTACGCCTGGCATCTACATGGGCCGACCCACACAtaatggtggtggtggtggtggaggagagcgAAACAGTGGCAgcagtggtggagggaggaggggccgGGACTCGTACGACCGATACGATGATCGACGGGGCGGCGGCTACGACCGTGGATATGACCGTGGATACGATCGGGGAGACCGAGGTGGAGACCGGGGATATGACAGATATGACGAGTACGACAAGTACAGTCGCAggcgctctccctctccctactaCAGTCGATACAGGTCACGCTCCAGGTCTCGCTCATACAGCCCACGACGATACTAACAGACTTCCATCAAGATTAAGTTTTCCTTTTCTTCGTGACCCACATTGGAACGGAGCCGTTTGGGAGCTTTGTCACGCTAACTGAAGTGTTTATCAACAGACAGAATCTCCTCTGTGACTTAGCACGGAAGTCAGAGTTCGGACAGAGAGTCAGTCGTTTGTTTACGTGCTGTAGATGTCttaatttttaaaaaacttttcgATGCATCCATGTAGTGTTTGCTAAAGATCTAGAGGGTGGTAATGAAACTAATTGAGCCTGTTTTGAGTGTCTTTAGAACGTACCCTTCTCCATCACTGATCTGTAAGTGACTGTATAAGTGGAAGCATGGTATACATTTTATTGCTTTCACCAATCCAGCCTTGACAGATCAGTGATTACCTCAAGGGAAGAAAATATGTATTTAATATTCAAAGTATTCAAACAGGCTTTTTGGTTTTAGTAggaggaaatgtgaaatgaatcagTGGATTGAGAAGGGTCTTCGTTTTTGAGTTGCTTGTTTATTGTCGGGATACCTCCGGAGATTTTTATTTAGAtgtatgatttttttattttaatgaaaATAAAAACCCAAATCTTGA

Function

NR:

description
transformer-2 protein homolog alpha-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12897 TRA2; transformer-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572562.2 True 1692 mRNA 0.51 9 57642685 57648819

Neighbor

gene id symbol gene type direction distance location
LOC110496585 LOC106588871 coding upstream 9971 57628437 ~ 57632714 (+)
LOC118941191 LOC106588856 coding upstream 147467 57480504 ~ 57495218 (+)
LOC110496582 LOC106588858 coding upstream 166286 57441377 ~ 57476399 (+)
LOC110496864 LOC106588860 coding upstream 222680 57390771 ~ 57420005 (+)
tax1bp1a LOC106588861 coding upstream 306403 57292750 ~ 57336282 (+)
LOC110496587 LOC106588873 coding downstream 8246 57657065 ~ 57694865 (+)
LOC110496589 galnt15 coding downstream 81125 57729944 ~ 57742687 (+)
oxnad1 oxnad1 coding downstream 95430 57744249 ~ 57760416 (+)
LOC110496591 LOC106588881 coding downstream 202360 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 coding downstream 245035 57893854 ~ 57935297 (+)
G1566024 NA non-coding upstream 121818 57520038 ~ 57520867 (+)
G1565938 NA non-coding upstream 201445 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 212900 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 255983 57379653 ~ 57386702 (+)
G1565906 NA non-coding upstream 316702 57325583 ~ 57325983 (+)
G1566109 NA non-coding downstream 6454 57655273 ~ 57655494 (+)
G1566158 LOC106570535 non-coding downstream 119567 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 172791 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 198010 57846829 ~ 57849957 (+)
G1566267 NA non-coding downstream 324585 57973404 ~ 57976373 (+)
LOC110496571 hoxa7aa other upstream 530722 57109128 ~ 57112335 (+)
G1565672 NA other upstream 610722 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1473482 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1590892 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1733751 55908085 ~ 55908934 (+)
G1566224 tbc1d5 other downstream 292278 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 715437 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1222080 58864013 ~ 58873692 (+)

Expression


Co-expression Network