LOC118941192


Basic Information

Item Value
gene id LOC118941192
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57652774 ~ 57656815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037516.1
TTCTATATGAATCAGCGCGCGAAGAAAACTGTTTTTTCACTGTTAATGGAAAAAGGTAATAGCACGTTCCTAATCTAACGATGCGGCTAGATACATGTTAGGCTACTCCACAAGAACAGTCCCATTATTTGTGTTGGTCAATGAGAAAGTTGGAGATGGAAATTATCTTATATAAAAGAAAAAGGTAAAAGAGGTAAATTAGATGGTTTCAAACACCTCTATTAGGCCTACATGTTCGTCTGCTTCGCAAATTCACCTGTAATGTATTACATGGTAAAAATAAGGATGTCATCTTTTCCTCAACATAAAAGTATACTTGCCTTTCAACAAACAATAAACAACCGTGTAATTAATTCGTTTAGTTCAATAGTCTAGCTTATTCGTTCAGTAAACCCGCACAATTTAGTCGATTTGTTCAATGAGCCCAACTCTAATTCTGTTTGTTGTGAAATAACACAATGTTTATTTAAGACACTTTTCTGGAAATGTGAAATATACTgtgttcatatatatatatatatatatagataaaaTATTGGACTATCAGTGTGACTTAGATTCTATACTTTGTTTACATCCAACCAATGTACGCATTCCTTCTCTTCGCTACCATTCCAGGCTTGTACAATGAGCTCAGAAACTGCAAAGTTGTGAATATATCCGAGAAGAATGTACAGAAAAAGACCCCGCCCACATTCTTTGAGGAAAACTTTATTCCTTAGGGCTAAACAGGCTTAAATAAAGAAAGATTCATATACCAAAGACTGCGTCTTGCATGGAATGATTTGAGATTTTTAAGAATGGAAAGCACACGGGGACCATCGTCTCATCCAGTGAAAGCCTTACCATCCTGCAGCAGGTGGTGGTGCTGATAAAGGCGGTCAAAGAAAGGTGAAAGTGGTTTTATGTCATGTGTTTACCCTCTTTCAAACATGTGCATCTCTACTGTAATTCAACGATTTATTTTCAAAGATAGCCTCAAAATATTACCTCATTCCCTGTAGCCATTCCCCTTGCAAGGGGAAGATGAAACTCTATTGGTCAACATAAACTAGTAGGGCTGGTCAGTTTATTAATATTTTCCCTTGTAACTGTATCTTGGATTAAAAATAATTTGCTCTTAAAACAAACTATAGCATTATTTTCGAATGTTTATGTTCCTGACCCTATAGTAACCACAGTGTCGTCAGTGGTGTGATGGTAGCCATTACCCACTTCAGTGGGCTCCGGTATCATTAGTTTCAAGGTCTCCCGATACTCCAGATAAACGTTGTGGTTTCCACCCCACCCCTCTATTACGGCTTCTGATCAGTCAACTAGCCTGCTGAATCACAAATGCTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037516.1 True 1344 mRNA 0.37 3 57652774 57656815

Neighbor

gene id symbol gene type direction distance location
fam221a fam221a coding downstream 24465 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 72311 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 84969 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 226771 57418906 ~ 57427510 (-)
LOC110496580 LOC106588863 coding downstream 278982 57336342 ~ 57373792 (-)
LOC110496588 LOC106588875 coding upstream 42299 57699114 ~ 57715653 (-)
rftn1a LOC106588880 coding upstream 109685 57766500 ~ 57812891 (-)
dazl dazl coding upstream 165918 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 181904 57838719 ~ 57848361 (-)
LOC110496593 tbc1d5 coding upstream 282798 57939613 ~ 57966150 (-)
G1566688 NA non-coding downstream 986 57651073 ~ 57651788 (-)
G1566685 NA non-coding downstream 3957 57647034 ~ 57648817 (-)
G1566683 NA non-coding downstream 8746 57642739 ~ 57644028 (-)
G1566667 LOC106588871 non-coding downstream 19659 57631777 ~ 57633115 (-)
G1566660 ccdc126 non-coding downstream 21173 57630735 ~ 57631601 (-)
G1566716 NA non-coding upstream 35267 57692082 ~ 57692457 (-)
G1566714 NA non-coding upstream 36096 57692911 ~ 57760375 (-)
G1566748 NA non-coding upstream 77308 57734123 ~ 57734391 (-)
G1566715 NA non-coding upstream 99567 57756382 ~ 57761979 (-)
G1566713 NA non-coding upstream 107687 57764502 ~ 57765171 (-)
LOC110496560 LOC106588840 other downstream 915427 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1164485 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2987131 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2999924 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3757825 53887137 ~ 53895002 (-)
G1566899 NA other upstream 370696 58027511 ~ 58027790 (-)
G1566923 NA other upstream 418808 58074209 ~ 58078146 (-)
G1566972 NA other upstream 510569 58167384 ~ 58167697 (-)
G1567080 NA other upstream 753684 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1212548 58869363 ~ 58870007 (-)

Expression


Co-expression Network