LOC110496588 (LOC106588875)


Basic Information

Item Value
gene id LOC110496588
gene name LOC106588875
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57699114 ~ 57715653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572566.2
CAGTTATGTGTTTGGGAGGGTCCGCGTGAGCAGCAATATCTTTGGGGTTGTGTGGATATAGTTGCAGCTTTTTCTCCAGGTAGAAATGGGACGTTTACATTATGTCTGTGTTCTGGCTTGTACTTTTTTCGTTTCTCAAGCCAATGGACTCAAAACATTCAGTTTCGATGAAGTTTCCACCAATCCCTGGCTGGAACCCAGACAGTAACCCATGGGATGACTATCTTTACCCACCCTTCAGTCCCAAGGAACTAACCCGGAGGAAAGGTCAGCCCATCAAAGTTCGCCTGACCAGTGACAGTCCTGCGATCATTGGCTCTATGGTGTCATTTACGGCCAAGCTAGAGTACCCACCTTGTCAGAAGGAGGATGCCAATGGGGAGCTTGTGTGGGATGAGCATTGTCCGGATGGTGAGGAGCTGGAGGCCTCAGCTAACGGTCAGCTGAAGCATGGCTATGTGTTTAACTGGACCTCCTGGCTGGATGACTACGGCTTTGGAAAGTGTACTGACCTGAAGAGATGTAACGTCTTCCCAGACGGGAAACCCTTCCCTCAGAGCAACGACTGGAGACACAAGGGCTACGTCTATGTATGGCACTCCATGGgtcagtACTCTGAGACGTGCGATGGCTCCTCTTCCACCCTGACAGTGAACACCAGTGACATCACTCTGGGGCCGGAGCTGATAGAAGTCATGGTGTACAGGAAACGTGAGCGCAGGAAGTACAGCCCCCTGGCCACAGACAAGACCGTCTTCTTCGTCACAGACAAGATCCCAGTGGCGGTGAATATTTCCCAGAAGGAAGCATCCAACCTGTCGGCGAGCGTGTTTGTGCGTGGCGAGGACGTGGTGTTCAGTGTGTCTGTTCACGACCCCAGTAACTACCTGAAGACTGCCGATGCCGTCGACTACATCTGGGACTTCAAGAACGGCAACCAGCTGGTCACCCATAGCaacgtggccacgcacgcctacAGCGCGGTCGGCGAAGTTAACGTGAAGCTGATGGTGGAGGTGGCGATCAAGATCCCGTGCCCCCCGCCAAAACCGATGAGTGTTACTACGCCACAAACTACAGCGGCTCCTACACCTCCCACTGGCACTCACTCCATCACTAGCAAAATGGAAACAACCCATGGTTATGTGCCAGTCACCACTGCCAGACCCACCTCCAAGGGCCCCAACACACCTGTTCCCGGGACAACAGGCTTCCAGACGACAGAGCCCCTCCCCTCGACGGTGGCTGATTTGACCCAGGGGTTCAACCCGACCTCGCTGCTGCCTGCTGTCCCCACCCCTATGGCCCAGCTCCATCACAGACACCTGGCGGCCACCGACTGCTTCCGCTACCTCTACGGAACTTTCCAGACCAACATCACCATCATCGAGCACCTAAtcaacagccagccagccaatcgaATCGTGGACGTGTCTGCTGCCAAGGTGACCAACACTGACATCAGCTTCCTGGTCAAGTGCCTGGGCAGCACTCCCACCTCAGCCTGCACCATCGTGTCGGACCCCTCCTGCCGCCAGGTCAGGAACATCGTGTGTGACGACGTGCCTCCGTCTCTGGGGTGCGAGGTGCGCCTGCGGAGGACCTTCCTGGAGCCGGGGATCTACTGTGTCAACATCACCCTGGAGGATGCCAGCAGTATGGCCCTCGCCACCATCACCATCAGCAACACTGACCCTGACACACCCGTGTCTAAAGCTCCTCATGCTGCAGAGGTTGTCCTCTCCTCCAGTGCTATCCTGGTAGCCATCTTTGCCTTCATCGCCTTCATAGTCTACAAgcGCTATAAGGTCTACAGACCTATAAGGTCTACAGACCTGAGGGAGATCATATTCCCCACCAACGAGGAGAGTCGCCGCCTGCTGACGGACAGACGCCCCGTGTAGACCCACCGTCGGTACTACAGAAGGGAAGCAGAACGAAATAAAACAAATAGAACTTACACTTGTCTGTCAGTTAGGATATTGAGTATCTGTTCTACAtcatacatttctatctgaatgttctGTAACATTATATAATCCTGAACAGGCGCAAGCGTTTTTACTTAGAGGTTCTTTAGTAACAAATTATACATTTAGCACATTTATAAATGCATCACAAAGATTATACATATACCAATAACCAAGAGAACTTCTTTACATTTAATTTTGTCAAAGTAACACTGTTAATAGGTAAGATGTGCTGGAAAATATTAATATATTTTCTGTTTAGTTCACTTTGTAGTAGAAAAGCACAAGTATGTGGCAAATGGCAAGAATTAAGAGAAGTTGAAGCATGTGGCAAATAGCAAGAATTAAGAAAAGTTTGCAATAAAGCTCAGTGTTTTGAAGTTGGGGCGGGGCAGTGTTTAAGGCAGTGCTggagtgtattcattccaccgattctgttgcaaaacgtttcttaaactgGGGctggacctacctgaatttgtccaatagacactcgttttgctctgtttgcttccatttggtTCTTAAACTGTAAACAGtttctgtaatgaatacacccctggtgtGAGCGTGATAGTAAGGCCCTTTCCCATTTCAATCCCTAGCTTCTTCCCCTAGTCTTTTCAGATCTGTGAACTCCAAAGAGAAATGGGGCTAGGAACTCAAATGGAACTGGGCCAAATGGAACTGCTTTGAAGTTAAACGGGTCTAATGGTTTTGGAAATCAAATTTAGTAAATATCTTTGCAGACTTTTACAAGCCTAACAATGTGTTACTTTTAGAAAATGTTCAAATATTAGATTTATAAAAGTCTTTAACTGTACATCCCACTGCCCATTCTCTAATGTGCATATCATTTACATTTGTTGCACGAATGTACTGAATTGTAGTCATTTAGTTACTATAAAAGCCATCCTTTCAAACCAATCTAAAAA
>XM_021572564.2
GGAAGGAAGGGAGAATAGGTGCGCGTGGGAGCAGTTATGTGTTTGGGAGGGTCCGCGTGAGCAGCAATATCTTTGGGGTTGTGTGGATATAGTTGCAGCTTTTTCTCCAGGTAGAAATGGGACGTTTACATTATGTCTGTGTTCTGGCTTGTACTTTTTTCGTTTCTCAAGCCAATGGACTCAAAACTTACCGAGACATGTTCCCTCATAAGCATTCAGTTTCGATGAAGTTTCCACCAATCCCTGGCTGGAACCCAGACAGTAACCCATGGGATGACTATCTTTACCCACCCTTCAGTCCCAAGGAACTAACCCGGAGGAAAGGTCAGCCCATCAAAGTTCGCCTGACCAGTGACAGTCCTGCGATCATTGGCTCTATGGTGTCATTTACGGCCAAGCTAGAGTACCCACCTTGTCAGAAGGAGGATGCCAATGGGGAGCTTGTGTGGGATGAGCATTGTCCGGATGGTGAGGAGCTGGAGGCCTCAGCTAACGGTCAGCTGAAGCATGGCTATGTGTTTAACTGGACCTCCTGGCTGGATGACTACGGCTTTGGAAAGTGTACTGACCTGAAGAGATGTAACGTCTTCCCAGACGGGAAACCCTTCCCTCAGAGCAACGACTGGAGACACAAGGGCTACGTCTATGTATGGCACTCCATGGgtcagtACTCTGAGACGTGCGATGGCTCCTCTTCCACCCTGACAGTGAACACCAGTGACATCACTCTGGGGCCGGAGCTGATAGAAGTCATGGTGTACAGGAAACGTGAGCGCAGGAAGTACAGCCCCCTGGCCACAGACAAGACCGTCTTCTTCGTCACAGACAAGATCCCAGTGGCGGTGAATATTTCCCAGAAGGAAGCATCCAACCTGTCGGCGAGCGTGTTTGTGCGTGGCGAGGACGTGGTGTTCAGTGTGTCTGTTCACGACCCCAGTAACTACCTGAAGACTGCCGATGCCGTCGACTACATCTGGGACTTCAAGAACGGCAACCAGCTGGTCACCCATAGCaacgtggccacgcacgcctacAGCGCGGTCGGCGAAGTTAACGTGAAGCTGATGGTGGAGGTGGCGATCAAGATCCCGTGCCCCCCGCCAAAACCGATGAGTGTTACTACGCCACAAACTACAGCGGCTCCTACACCTCCCACTGGCACTCACTCCATCACTAGCAAAATGGAAACAACCCATGGTTATGTGCCAGTCACCACTGCCAGACCCACCTCCAAGGGCCCCAACACACCTGTTCCCGGGACAACAGGCTTCCAGACGACAGAGCCCCTCCCCTCGACGGTGGCTGATTTGACCCAGGGGTTCAACCCGACCTCGCTGCTGCCTGCTGTCCCCACCCCTATGGCCCAGCTCCATCACAGACACCTGGCGGCCACCGACTGCTTCCGCTACCTCTACGGAACTTTCCAGACCAACATCACCATCATCGAGCACCTAAtcaacagccagccagccaatcgaATCGTGGACGTGTCTGCTGCCAAGGTGACCAACACTGACATCAGCTTCCTGGTCAAGTGCCTGGGCAGCACTCCCACCTCAGCCTGCACCATCGTGTCGGACCCCTCCTGCCGCCAGGTCAGGAACATCGTGTGTGACGACGTGCCTCCGTCTCTGGGGTGCGAGGTGCGCCTGCGGAGGACCTTCCTGGAGCCGGGGATCTACTGTGTCAACATCACCCTGGAGGATGCCAGCAGTATGGCCCTCGCCACCATCACCATCAGCAACACTGACCCTGACACACCCGTGTCTAAAGCTCCTCATGCTGCAGAGGTTGTCCTCTCCTCCAGTGCTATCCTGGTAGCCATCTTTGCCTTCATCGCCTTCATAGTCTACAAgcGCTATAAGGTCTACAGACCTATAAGGTCTACAGACCTGAGGGAGATCATATTCCCCACCAACGAGGAGAGTCGCCGCCTGCTGACGGACAGACGCCCCGTGTAGACCCACCGTCGGTACTACAGAAGGGAAGCAGAACGAAATAAAACAAATAGAACTTACACTTGTCTGTCAGTTAGGATATTGAGTATCTGTTCTACAtcatacatttctatctgaatgttctGTAACATTATATAATCCTGAACAGGCGCAAGCGTTTTTACTTAGAGGTTCTTTAGTAACAAATTATACATTTAGCACATTTATAAATGCATCACAAAGATTATACATATACCAATAACCAAGAGAACTTCTTTACATTTAATTTTGTCAAAGTAACACTGTTAATAGGTAAGATGTGCTGGAAAATATTAATATATTTTCTGTTTAGTTCACTTTGTAGTAGAAAAGCACAAGTATGTGGCAAATGGCAAGAATTAAGAGAAGTTGAAGCATGTGGCAAATAGCAAGAATTAAGAAAAGTTTGCAATAAAGCTCAGTGTTTTGAAGTTGGGGCGGGGCAGTGTTTAAGGCAGTGCTggagtgtattcattccaccgattctgttgcaaaacgtttcttaaactgGGGctggacctacctgaatttgtccaatagacactcgttttgctctgtttgcttccatttggtTCTTAAACTGTAAACAGtttctgtaatgaatacacccctggtgtGAGCGTGATAGTAAGGCCCTTTCCCATTTCAATCCCTAGCTTCTTCCCCTAGTCTTTTCAGATCTGTGAACTCCAAAGAGAAATGGGGCTAGGAACTCAAATGGAACTGGGCCAAATGGAACTGCTTTGAAGTTAAACGGGTCTAATGGTTTTGGAAATCAAATTTAGTAAATATCTTTGCAGACTTTTACAAGCCTAACAATGTGTTACTTTTAGAAAATGTTCAAATATTAGATTTATAAAAGTCTTTAACTGTACATCCCACTGCCCATTCTCTAATGTGCATATCATTTACATTTGTTGCACGAATGTACTGAATTGTAGTCATTTAGTTACTATAAAAGCCATCCTTTCAAACCAATCTAAAAA
>XM_021572565.2
GGAAGGAAGGGAGAATAGGTGCGCGTGGGAGCAGTTATGTGTTTGGGAGGGTCCGCGTGAGCAGCAATATCTTTGGGGTTGTGTGGATATAGTTGCAGCTTTTTCTCCAGGTAGAAATGGGACGTTTACATTATGTCTGTGTTCTGGCTTGTACTTTTTTCGTTTCTCAAGCCAATGGACTCAAAACTTACCGAGACATGTTCCCTCATAAGCATTCAGTTTCGATGAAGTTTCCACCAATCCCTGGCTGGAACCCAGACAGTAACCCATGGGATGACTATCTTTACCCACCCTTCAGTCCCAAGGAACTAACCCGGAGGAAAGGTCAGCCCATCAAAGTTCGCCTGACCAGTGACAGTCCTGCGATCATTGGCTCTATGGTGTCATTTACGGCCAAGCTAGAGTACCCACCTTGTCAGAAGGAGGATGCCAATGGGGAGCTTGTGTGGGATGAGCATTGTCCGGATGCTAACGGTCAGCTGAAGCATGGCTATGTGTTTAACTGGACCTCCTGGCTGGATGACTACGGCTTTGGAAAGTGTACTGACCTGAAGAGATGTAACGTCTTCCCAGACGGGAAACCCTTCCCTCAGAGCAACGACTGGAGACACAAGGGCTACGTCTATGTATGGCACTCCATGGgtcagtACTCTGAGACGTGCGATGGCTCCTCTTCCACCCTGACAGTGAACACCAGTGACATCACTCTGGGGCCGGAGCTGATAGAAGTCATGGTGTACAGGAAACGTGAGCGCAGGAAGTACAGCCCCCTGGCCACAGACAAGACCGTCTTCTTCGTCACAGACAAGATCCCAGTGGCGGTGAATATTTCCCAGAAGGAAGCATCCAACCTGTCGGCGAGCGTGTTTGTGCGTGGCGAGGACGTGGTGTTCAGTGTGTCTGTTCACGACCCCAGTAACTACCTGAAGACTGCCGATGCCGTCGACTACATCTGGGACTTCAAGAACGGCAACCAGCTGGTCACCCATAGCaacgtggccacgcacgcctacAGCGCGGTCGGCGAAGTTAACGTGAAGCTGATGGTGGAGGTGGCGATCAAGATCCCGTGCCCCCCGCCAAAACCGATGAGTGTTACTACGCCACAAACTACAGCGGCTCCTACACCTCCCACTGGCACTCACTCCATCACTAGCAAAATGGAAACAACCCATGGTTATGTGCCAGTCACCACTGCCAGACCCACCTCCAAGGGCCCCAACACACCTGTTCCCGGGACAACAGGCTTCCAGACGACAGAGCCCCTCCCCTCGACGGTGGCTGATTTGACCCAGGGGTTCAACCCGACCTCGCTGCTGCCTGCTGTCCCCACCCCTATGGCCCAGCTCCATCACAGACACCTGGCGGCCACCGACTGCTTCCGCTACCTCTACGGAACTTTCCAGACCAACATCACCATCATCGAGCACCTAAtcaacagccagccagccaatcgaATCGTGGACGTGTCTGCTGCCAAGGTGACCAACACTGACATCAGCTTCCTGGTCAAGTGCCTGGGCAGCACTCCCACCTCAGCCTGCACCATCGTGTCGGACCCCTCCTGCCGCCAGGTCAGGAACATCGTGTGTGACGACGTGCCTCCGTCTCTGGGGTGCGAGGTGCGCCTGCGGAGGACCTTCCTGGAGCCGGGGATCTACTGTGTCAACATCACCCTGGAGGATGCCAGCAGTATGGCCCTCGCCACCATCACCATCAGCAACACTGACCCTGACACACCCGTGTCTAAAGCTCCTCATGCTGCAGAGGTTGTCCTCTCCTCCAGTGCTATCCTGGTAGCCATCTTTGCCTTCATCGCCTTCATAGTCTACAAgcGCTATAAGGTCTACAGACCTATAAGGTCTACAGACCTGAGGGAGATCATATTCCCCACCAACGAGGAGAGTCGCCGCCTGCTGACGGACAGACGCCCCGTGTAGACCCACCGTCGGTACTACAGAAGGGAAGCAGAACGAAATAAAACAAATAGAACTTACACTTGTCTGTCAGTTAGGATATTGAGTATCTGTTCTACAtcatacatttctatctgaatgttctGTAACATTATATAATCCTGAACAGGCGCAAGCGTTTTTACTTAGAGGTTCTTTAGTAACAAATTATACATTTAGCACATTTATAAATGCATCACAAAGATTATACATATACCAATAACCAAGAGAACTTCTTTACATTTAATTTTGTCAAAGTAACACTGTTAATAGGTAAGATGTGCTGGAAAATATTAATATATTTTCTGTTTAGTTCACTTTGTAGTAGAAAAGCACAAGTATGTGGCAAATGGCAAGAATTAAGAGAAGTTGAAGCATGTGGCAAATAGCAAGAATTAAGAAAAGTTTGCAATAAAGCTCAGTGTTTTGAAGTTGGGGCGGGGCAGTGTTTAAGGCAGTGCTggagtgtattcattccaccgattctgttgcaaaacgtttcttaaactgGGGctggacctacctgaatttgtccaatagacactcgttttgctctgtttgcttccatttggtTCTTAAACTGTAAACAGtttctgtaatgaatacacccctggtgtGAGCGTGATAGTAAGGCCCTTTCCCATTTCAATCCCTAGCTTCTTCCCCTAGTCTTTTCAGATCTGTGAACTCCAAAGAGAAATGGGGCTAGGAACTCAAATGGAACTGGGCCAAATGGAACTGCTTTGAAGTTAAACGGGTCTAATGGTTTTGGAAATCAAATTTAGTAAATATCTTTGCAGACTTTTACAAGCCTAACAATGTGTTACTTTTAGAAAATGTTCAAATATTAGATTTATAAAAGTCTTTAACTGTACATCCCACTGCCCATTCTCTAATGTGCATATCATTTACATTTGTTGCACGAATGTACTGAATTGTAGTCATTTAGTTACTATAAAAGCCATCCTTTCAAACCAATCTAAAAA

Function

NR:

description
transmembrane glycoprotein NMB isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20732 GPNMB; transmembrane glycoprotein NMB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572566.2 False 2905 mRNA 0.49 12 57699114 57715622
XM_021572564.2 False 2962 mRNA 0.49 12 57699114 57715653
XM_021572565.2 True 2941 mRNA 0.49 12 57699114 57715653

Neighbor

gene id symbol gene type direction distance location
LOC118941192 NA coding downstream 42299 57652774 ~ 57656815 (-)
fam221a fam221a coding downstream 70805 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 118651 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 131309 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 273111 57418906 ~ 57427510 (-)
rftn1a LOC106588880 coding upstream 50847 57766500 ~ 57812891 (-)
dazl dazl coding upstream 107080 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 123066 57838719 ~ 57848361 (-)
LOC110496593 tbc1d5 coding upstream 223960 57939613 ~ 57966150 (-)
LOC110496867 LOC106588885 coding upstream 281274 57996927 ~ 58019631 (-)
G1566716 NA non-coding downstream 6657 57692082 ~ 57692457 (-)
G1566688 NA non-coding downstream 47326 57651073 ~ 57651788 (-)
G1566685 NA non-coding downstream 50297 57647034 ~ 57648817 (-)
G1566683 NA non-coding downstream 55086 57642739 ~ 57644028 (-)
G1566667 LOC106588871 non-coding downstream 65999 57631777 ~ 57633115 (-)
G1566748 NA non-coding upstream 18470 57734123 ~ 57734391 (-)
G1566715 NA non-coding upstream 40729 57756382 ~ 57761979 (-)
G1566713 NA non-coding upstream 48849 57764502 ~ 57765171 (-)
G1566828 NA non-coding upstream 146253 57861906 ~ 57863122 (-)
G1566839 NA non-coding upstream 183308 57898961 ~ 57901421 (-)
LOC110496560 LOC106588840 other downstream 961767 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1210825 56481468 ~ 56488289 (-)
G1563253 NA other downstream 3033471 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 3046264 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3804165 53887137 ~ 53895002 (-)
G1566899 NA other upstream 311858 58027511 ~ 58027790 (-)
G1566923 NA other upstream 359970 58074209 ~ 58078146 (-)
G1566972 NA other upstream 451731 58167384 ~ 58167697 (-)
G1567080 NA other upstream 694846 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1153710 58869363 ~ 58870007 (-)

Expression


Co-expression Network