LOC110496589 (galnt15)


Basic Information

Item Value
gene id LOC110496589
gene name galnt15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57729944 ~ 57742687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572568.2
CTCGCATTAGGACCACAGGGGCGCGGTGGAAGGACATATTTTACGCGCTTCACTCCAACAGCAATGAGTATCACGGAACAAGGGACATAACTGGAAACCACATTTGTCGGAGGTGAAACGAAGCGCTAACGTGTTCAGAGCTGCAGTTCTTTGGAAGGACACCGTGGAAAAAATATGGACAAAAACTAAAGAACAACATCTATGCGTAATTCCATTTGGTCATGATTACGGACTATCCATTGCAAGCCTAAAACGTAATGGTTAAAAAGTTGTAGCCAAAAGGTGCAGCATCTGACCATGTTGTCCCCAGTCAAATTTGATGAGGGAAATAAGATTCAGCGCTGACTTCTCTATGTGAGaccgtccctctcctctctctctctcccgctcaccATGCGGCTTTGGAGCAGACCCAGACCATGCCGGCGGGTGATGCTCTGTCTCTGGTTACTTATCCTCGCTCTATCCGTGGCCACGCTGGCCCTCATGGACCTGGTCTTTCGGGATCAGACCCAGACACCGCCCAACTCGCCCCGCCGTCCCTTCCAGCGGCTCTCTGGTCCACCGGACCTGGAGGTGATCGTGGATTCCTGGGACCGTCTCAAACAGGAGCATAATCTCGGTCTCGCGCCGCTGAGCTCCCTGCAGGAGGACCAGCTTCTCTTCGTGCCCTCAACCCAGGTGAGGAACCCAGCTCCGCCGCCGAGGAAGGGGAGTTACCGGATGGTTATATCGAGCGCCAAGAAGGAATCAGCGGTCCCGGTGCTACCGACGCACGGGGATATGGGGAGACCGGTGCGGCTGAAGCTGGAGGGGCTAGAAAGGGACATGGAGAAGTCTGCTCTGCAGAAATACGGCTTCAACGAGCTGGTGAGCGAACGGATCTCACTGCATCGCAGATTGCCCGAGGCTCGCCATCCTTCGTGCCTCGTTGAGCGTTACAGTGAGTCGCTGCCGTCCGCGAGCGTGGTGATATGTTTCCATGACGAGGCTTGGTCCACGCTCCTCCGCACCGTGCACAGCGTGCTCGACACAGCGCCCAAGGAGTACCTGCGCGAGGTCCTGCTCGTGGACGACCTCAGTCAGCATGGTCACCTGAAGAGTGTGCTGAGTGAGTATGTGTTGCTGCTGGAAGGGGTGCGTCTAGTCCGCAGCACGTGGCGTCTGGGCGTGGCAGGGTGTCGCTCTCTGGGTGCAGCCAGAGCTGTGGGGGAGGTACTGGTCTTCATGGACTCACACTGTGAGTGCCACAGGGGCTGGTTGGAACCACTTTTGGAGCGAGTGGCACAGGACAggaccagagtggTGTCCCCCATCATAGACGTGATAGACTGGCAGACGTTCCAGTACAACGCCACCCAGTGGCCACACAGGGGAGTGTTTGACTGGAGACTGGACTTCAACTGGGAAACTCTGTCCCAACAGGAAAACCAGGATTCACCAGTGGAGCCTGTCCAGAGTCCAGCGTTGGTGGGCGTGGTCTTAGCAATTGACAGACACTTCTTCCAGAGCGTGGGAGGTTATGATCCAGGCATGCTGTTCTGGGGGGCGGAGCAGATGGAGTTGTCCATCAGGGTGTGGTTGTGTGGGGGCTCCATGGAGGTGgtcccctgctccagagtggcTCACCTGGGGCGCCATCACCAGCCCTATACCCTCCCTGACCAGGACATCCTCCAGAGGAACAAGATACGCATCGCTGACACCTGGCTGGATGCCTTCAGGAAGATCTACTATAAGAGAGATACACTAGCGCACTTCATCAGGCAGTCTGAGAGTCCTAACATTACAGAGCTAGTCAGACTGAAGAAGAGACTGGGCTGTCGTAACTTCCACTGGTTCCTGACTAATGTCTACCCAGACCTCTATATACCCCAGGACAGACCTTCACTCTCAGGGGAGCTGTACAATGTTGGCACTGGCTATTGTGCGGATTACCCTGGAGGAAGGGGTGCACAGGGCGCCACTATGGACATAGCACCATGCAGTGGCAATGGCTACCAGCACTGTGAGCTGAACTCCATGGGAGAGGTGCGCTGGGGGCCAGCGGGACGGCTGTGTTTCCACGCCCAAGGGGAGAGGGTGGTACTAACACCGTGCCCCGCCCATCAGCCACCACGCAACAAACCACAGTGGAGGGTCATCAAGCTGAGTGGCCAGGTGGTTCACTTGCAGACCCAGAGATGTCTGGAAGctgtgaaggaggagggggataAGCAGCAGAGGGACACAGGAGGTCACCAGAGAGGGGGCAACGCTACCCAGAAGGGTCTGTTCCTGCGCCCCTGTGCCCATCAGCCCCGGCAACAGTGGCACTTCGAACAGCTAGTTGTCCCTAAAGGGGCCTGAGACTGACTTGAAGTATAGTTACAGTACATTGCCTAAAGGCACATAATAAAAGCACATGTTGTAAGGAGCCAGTATCATAAGTGGGTCTCTATGGGCAAGAGGTCTAAGGCTAAATTCAATAGTAATGCTGATGTggctatactgtatgtctgtatatTCTTTGCAATGGCTTGTGGAATCAGCATCTTGCCTGCATTTAGATTTGGTTTCTGTTTCAAGGACATTTAGTGCAAGTTCTATGGTGTGAACAAACCATAAATCACAGAGGAAATAAGCTGTATGATTTTGTACAATGCTGCACATAAAGGAATATTCTATATTATGAAACTGCCAGATTTAGTTAGCGAATAGCCTATAATGTAGGCTTAAATGGTGACAGAATCCTTTAGAATAATTTAGAAGTGCAAACAATCAAGATTTTTCATCCTGAATAAAATATCTAACAAAAGTA

Function

symbol description
galnt15 Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in O-glycan processing. Located in transport vesicle.

NR:

description
polypeptide N-acetylgalactosaminyltransferase 15

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572568.2 True 2800 mRNA 0.53 10 57729944 57742687

Neighbor

gene id symbol gene type direction distance location
LOC110496587 LOC106588873 coding upstream 35079 57657065 ~ 57694865 (+)
tra2a LOC106588872 coding upstream 81125 57642685 ~ 57648819 (+)
LOC110496585 LOC106588871 coding upstream 97230 57628437 ~ 57632714 (+)
LOC118941191 LOC106588856 coding upstream 234726 57480504 ~ 57495218 (+)
LOC110496582 LOC106588858 coding upstream 253545 57441377 ~ 57476399 (+)
oxnad1 oxnad1 coding downstream 1562 57744249 ~ 57760416 (+)
LOC110496591 LOC106588881 coding downstream 108492 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 coding downstream 151167 57893854 ~ 57935297 (+)
LOC110496868 LOC106588864 coding downstream 322797 58065484 ~ 58140619 (+)
LOC110496594 LOC106588886 coding downstream 439790 58182477 ~ 58187784 (+)
G1566109 NA non-coding upstream 74450 57655273 ~ 57655494 (+)
G1566024 NA non-coding upstream 209077 57520038 ~ 57520867 (+)
G1565938 NA non-coding upstream 288704 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 300159 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 343242 57379653 ~ 57386702 (+)
G1566158 LOC106570535 non-coding downstream 25699 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 78923 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 104142 57846829 ~ 57849957 (+)
G1566267 NA non-coding downstream 230717 57973404 ~ 57976373 (+)
G1566269 NA non-coding downstream 238912 57981599 ~ 57981812 (+)
LOC110496571 hoxa7aa other upstream 617981 57109128 ~ 57112335 (+)
G1565672 NA other upstream 697981 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1560741 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1678151 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1821010 55908085 ~ 55908934 (+)
G1566224 tbc1d5 other downstream 198410 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 621569 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1128212 58864013 ~ 58873692 (+)

Expression


Co-expression Network