rftn1a (LOC106588880)


Basic Information

Item Value
gene id rftn1a
gene name LOC106588880
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57766500 ~ 57812891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953351.1
tctcttcacctctctctttcttacctggctttctctcttcctttcaatctagctcctctctatctctccctcctctctttctccctgcagAGGGATGGGCTGCAGGCTTCCTAAGCTGCGGAGGACTGGGGAGGAGAAGAGTCCCGGGAAGATCTACTCCACCCTCCGACGACCGCAGGTGGAGACCAAGGTGGGCGTGGCCTACACCTACCACTTTCTGGATTTCCTGCTGGGGAAGGAAGaGGTGTCTGTGTCCTCAGTACTGTGTCTGTCGTCAGTGAGAGAGTTACCAGTCCAGGTGAGGGAGCTGTATGGTCAGGGCTTCGTCCTGGTGGCTGTCCATCCCTTTGTCCACCCTTGTGGCCCCAGGCCTGCACGCATTCAACGCCAGCTACACAGAGCTGTCCTcatcagagagacacacagTTCAGAGAACGAGCTGAAGTGGGCGGGGCTTCGCCTGGAGACAGACGTGTGTGTGGCGGGTCAACAGGCCCCTGACCCAGAAGTCATCCAGAACTACGTGAAGAAGATCCAGGACATGGCGGAGCAGGGTGTGCTGTTTGTGGGCTTCCTGCAGCAGCCTGGCGGGGGACCCTGTTTCCTGGGGCACTTGGACCCTGAGGACCTGTCCTCCCTGCACTCCAGCCCCTCCCCCATACACAGACACCCCACCAGTCCCTCAGAACCCATGATACTGGATCCCAGCCCTACAGACTCTGCAGAACCCCAGCAGAACCTCCTAGAACCAGAACACAACCGGAACACAGAAGTGAAAACACCAGAACACAAGTCGGTTGAACTCAGAACAATTGAGCAGAACCCTACAGATACCAGTCTGGTGGAGCTGGACTTGAGCTCCACAGGACCGCTAGATCTCACACAGGACTCTACTCCAATAGAATCATCAAACAGAGAACACGACCACAGTCCAGGCAAAATAGCCTCAATAGAAGACCAACCAAACCGCTGTCCAGATGAACCAGCAGACTCACCAGAGAGACCCAGCCAAAGAGATCCAGCTAATGACCAACAGAACCACAACCACGCCCCAACAGGACTCCCTGGTGACCAGGATCAACTACAGTCTGACAACACAATAGAGACCACATGTatagagagacaacagaatgaaaGCCAAGCAGACTTCCTCAGGATTCTACTACCCAACTTCAGCCCAACAGAGTTAACACATGGACTTGGTGGTCCAGACGCAGACAGACAGTGCCAGGGAGACAAACAGAGTCTAAGCCCTCAGACACAGAACCACAACCAGAGACCGGAAATAGACCACGGCTCAGACAACCTGGTCCGGTCACCAGAACTAGACAACGGTGACCACGGGTCAGAGTCCGGGGCTGAGAGGGGGTGTAACCGTAGAAACAAGGGCACGGGCGGTGACCAGGGTGAGCATCTGAGGAGCAGCAGAGTTCCgacccacaacaacaacaatcacaTCCGGGTCAAGAGTccagacagagaaaagagggctGTAGGGTCTCCACCAGCACAGAGCAgGGTGCAGCTGTTTGCCCTGTACAACCACACGGGGGAGCTGTCCAGCTCTCTGAGGTTCTACTCCCTCAGGGTTCCGCTGCAGCTGCAGAGAGAGGCAGGGCTAGTGACTGAGGTTGACGCCCACTGGCTGGATCACATGACCCAGCATTTCACCAGCGGAGCTCACCTCATTGACGGCTTCTTTCACCTTGGAGACGACAATGacaGCGGGGTCTCCTCCGTGGACAGTGTGTTCATCTTTCAGAGCTCCTCAGAAGAAACCCCACCCACTTCATACGACGCCATCGTGGTGGAGCAGTGGACCATTGTCGATGGTGTAGTGGTAAGGACAGACTACATTCCCTTGCTCCAGTCTCTGGCTCCCTATGGATGGAGACTGACGTGTGTGCTGCCTACTCCCATCGTTAAGACCAACAGTGATGGCAGTTTGTCCACAAAGCAGATCCTCTTCCTCCAGAGACCTGCCTTGCAACGCAACAGGAAAGACTTCAAGAAGTTGAACCTCAGGGGTCGGAACAAGCCGAAGAAAAACTCTGCTGGAGAAATGctagagaagaaagaggagagaaaggacacATCcccagtgatggagagagggatggatggacagaaGAGGAACacggaagaggaggaggagagagaggtgagaaggaaTTGTGAGAACAAAATAAATGAGAAAAGAAGAACCGCAGACAGAGATGGAAtcaagagagaagaggagagagagtgtgagacagaATTTCAAGAAGACTTCACCCAGGGTACAGAGGGCGGGGCCACAGACCTCAACCAGGAAGTAGAGCGGGGGAATGGCAAAGCCCTATTGGCCAGACATGAGAAGGCCGTTAGGTTTGCAGATCAGTTTGTCAATCAGAAGAATGATGAAGAGAAGTCAGAGGAGAAGATCACACAGCAGCTGAGTGAGAGAGCGCTGTTTTCTGGAGTATGTTAATTAGATATAATTAAATATAAAGCAcctgagtaggagtgctgatctaggaacagttttgccttttaaatcataatgaattagcggggaactgatcctagatcagcactcctactctgagatgtgTTCTGAATAACGTTACAGGCcctgacctgggttcaaatagtatttgtaaGATTGCTTGATTGAGCTTTCATGGTGCCTTGCCTGGATGGAACCAATGGAAAAgtaccaaaagtgcaaacccagCCCACCTGACACTCTAGGCACGCTCAGCAAGTTGTAATATTTCAAACAGCCTACTATTTTAACCCTGGAATGGAAATAATAAATATACAAAATGACAGAATAGGATGAAGCACTAGTAGCTCATCGATGGAAACCAAGTCACTTAACAGAATGGTGGTTAAGTTATATTCCTGGTACTGTATCAAACCTGGAGTcgtatacagtatatactctgtgtgtgtgtatatatatatatatacagtgcatatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacat
>XM_021572569.2
gagaagcatAATGGTAGACCGTGCTGacgctctcaaacacacacatagagggAGATATAATTGGAGGGAGTGAGCGGGGAGAAGAGAACGGAGTGTGTGTGAGGAGTTGATATCACGGGTTTAGGGAgggatacagtactgtacagttgtcAGAGGGAGGATTCGGATTTCCGGTTAGCGGAGCAGCATGATCTTAACCGCGGGTAGTGCCTCTTCAACCGAGGTGATCTCACCGACGACTGTGGATTGACAGACAGGCGCACAGAGAAACACACCGAGGACACATTTACCCCAGGAAGAGTGTgagggtttgtttgtgtgttggtgTAACCACATGAGCTCATTGCTTGCCCATGTGTCCTGACTGGGTTCGACTCCTCTGCCCGTGACAACATCCAAACGGctcctctctatctctccctcctctctttctccctgcagAGGGATGGGCTGCAGGCTTCCTAAGCTGCGGAGGACTGGGGAGGAGAAGAGTCCCGGGAAGATCTACTCCACCCTCCGACGACCGCAGGTGGAGACCAAGGTGGGCGTGGCCTACACCTACCACTTTCTGGATTTCCTGCTGGGGAAGGAAGaGGTGTCTGTGTCCTCAGTACTGTGTCTGTCGTCAGTGAGAGAGTTACCAGTCCAGGTGAGGGAGCTGTATGGTCAGGGCTTCGTCCTGGTGGCTGTCCATCCCTTTGTCCACCCTTGTGGCCCCAGGCCTGCACGCATTCAACGCCAGCTACACAGAGCTGTCCTcatcagagagacacacagTTCAGAGAACGAGCTGAAGTGGGCGGGGCTTCGCCTGGAGACAGACGTGTGTGTGGCGGGTCAACAGGCCCCTGACCCAGAAGTCATCCAGAACTACGTGAAGAAGATCCAGGACATGGCGGAGCAGGGTGTGCTGTTTGTGGGCTTCCTGCAGCAGCCTGGCGGGGGACCCTGTTTCCTGGGGCACTTGGACCCTGAGGACCTGTCCTCCCTGCACTCCAGCCCCTCCCCCATACACAGACACCCCACCAGTCCCTCAGAACCCATGATACTGGATCCCAGCCCTACAGACTCTGCAGAACCCCAGCAGAACCTCCTAGAACCAGAACACAACCGGAACACAGAAGTGAAAACACCAGAACACAAGTCGGTTGAACTCAGAACAATTGAGCAGAACCCTACAGATACCAGTCTGGTGGAGCTGGACTTGAGCTCCACAGGACCGCTAGATCTCACACAGGACTCTACTCCAATAGAATCATCAAACAGAGAACACGACCACAGTCCAGGCAAAATAGCCTCAATAGAAGACCAACCAAACCGCTGTCCAGATGAACCAGCAGACTCACCAGAGAGACCCAGCCAAAGAGATCCAGCTAATGACCAACAGAACCACAACCACGCCCCAACAGGACTCCCTGGTGACCAGGATCAACTACAGTCTGACAACACAATAGAGACCACATGTatagagagacaacagaatgaaaGCCAAGCAGACTTCCTCAGGATTCTACTACCCAACTTCAGCCCAACAGAGTTAACACATGGACTTGGTGGTCCAGACGCAGACAGACAGTGCCAGGGAGACAAACAGAGTCTAAGCCCTCAGACACAGAACCACAACCAGAGACCGGAAATAGACCACGGCTCAGACAACCTGGTCCGGTCACCAGAACTAGACAACGGTGACCACGGGTCAGAGTCCGGGGCTGAGAGGGGGTGTAACCGTAGAAACAAGGGCACGGGCGGTGACCAGGGTGAGCATCTGAGGAGCAGCAGAGTTCCgacccacaacaacaacaatcacaTCCGGGTCAAGAGTccagacagagaaaagagggctGTAGGGTCTCCACCAGCACAGAGCAgGGTGCAGCTGTTTGCCCTGTACAACCACACGGGGGAGCTGTCCAGCTCTCTGAGGTTCTACTCCCTCAGGGTTCCGCTGCAGCTGCAGAGAGAGGCAGGGCTAGTGACTGAGGTTGACGCCCACTGGCTGGATCACATGACCCAGCATTTCACCAGCGGAGCTCACCTCATTGACGGCTTCTTTCACCTTGGAGACGACAATGacaGCGGGGTCTCCTCCGTGGACAGTGTGTTCATCTTTCAGAGCTCCTCAGAAGAAACCCCACCCACTTCATACGACGCCATCGTGGTGGAGCAGTGGACCATTGTCGATGGTGTAGTGGTAAGGACAGACTACATTCCCTTGCTCCAGTCTCTGGCTCCCTATGGATGGAGACTGACGTGTGTGCTGCCTACTCCCATCGTTAAGACCAACAGTGATGGCAGTTTGTCCACAAAGCAGATCCTCTTCCTCCAGAGACCTGCCTTGCAACGCAACAGGAAAGACTTCAAGAAGTTGAACCTCAGGGGTCGGAACAAGCCGAAGAAAAACTCTGCTGGAGAAATGctagagaagaaagaggagagaaaggacacATCcccagtgatggagagagggatggatggacagaaGAGGAACacggaagaggaggaggagagagaggtgagaaggaaTTGTGAGAACAAAATAAATGAGAAAAGAAGAACCGCAGACAGAGATGGAAtcaagagagaagaggagagagagtgtgagacagaATTTCAAGAAGACTTCACCCAGGGTACAGAGGGCGGGGCCACAGACCTCAACCAGGAAGTAGAGCGGGGGAATGGCAAAGCCCTATTGGCCAGACATGAGAAGGCCGTTAGGTTTGCAGATCAGTTTGTCAATCAGAAGAATGATGAAGAGAAGTCAGAGGAGAAGATCACACAGCAGCTGAGTGAGAGAGCGCTGTTTTCTGGAGTATGTTAATTAGATATAATTAAATATAAAGCAcctgagtaggagtgctgatctaggaacagttttgccttttaaatcataatgaattagcggggaactgatcctagatcagcactcctactctgagatgtgTTCTGAATAACGTTACAGGCcctgacctgggttcaaatagtatttgtaaGATTGCTTGATTGAGCTTTCATGGTGCCTTGCCTGGATGGAACCAATGGAAAAgtaccaaaagtgcaaacccagCCCACCTGACACTCTAGGCACGCTCAGCAAGTTGTAATATTTCAAACAGCCTACTATTTTAACCCTGGAATGGAAATAATAAATATACAAAATGACAGAATAGGATGAAGCACTAGTAGCTCATCGATGGAAACCAAGTCACTTAACAGAATGGTGGTTAAGTTATATTCCTGGTACTGTATCAAACCTGGAGTcgtatacagtatatactctgtgtgtgtgtatatatatatatatacagtgcatatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacat

Function

NR:

description
raftlin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953351.1 False 3021 mRNA 0.51 9 57766500 57800099
XM_021572569.2 True 3372 mRNA 0.51 10 57766500 57812891

Neighbor

gene id symbol gene type direction distance location
LOC110496588 LOC106588875 coding downstream 50847 57699114 ~ 57715653 (-)
LOC118941192 NA coding downstream 109685 57652774 ~ 57656815 (-)
fam221a fam221a coding downstream 138191 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 186037 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 198695 57496639 ~ 57567805 (-)
dazl dazl coding upstream 9842 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 25828 57838719 ~ 57848361 (-)
LOC110496593 tbc1d5 coding upstream 126722 57939613 ~ 57966150 (-)
LOC110496867 LOC106588885 coding upstream 184036 57996927 ~ 58019631 (-)
sgo1 LOC106588889 coding upstream 400338 58213229 ~ 58223674 (-)
G1566713 NA non-coding downstream 1329 57764502 ~ 57765171 (-)
G1566715 NA non-coding downstream 4521 57756382 ~ 57761979 (-)
G1566714 NA non-coding downstream 6125 57692911 ~ 57760375 (-)
G1566748 NA non-coding downstream 32109 57734123 ~ 57734391 (-)
G1566716 NA non-coding downstream 74043 57692082 ~ 57692457 (-)
G1566828 NA non-coding upstream 49015 57861906 ~ 57863122 (-)
G1566839 NA non-coding upstream 86070 57898961 ~ 57901421 (-)
G1566857 NA non-coding upstream 118130 57931021 ~ 57931904 (-)
G1566806 NA non-coding upstream 130766 57943657 ~ 57944600 (-)
G1566871 NA non-coding upstream 160514 57973405 ~ 57976522 (-)
LOC110496560 LOC106588840 other downstream 1029153 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1278211 56481468 ~ 56488289 (-)
G1563253 NA other downstream 3100857 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 3113650 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3871551 53887137 ~ 53895002 (-)
G1566899 NA other upstream 214620 58027511 ~ 58027790 (-)
G1566923 NA other upstream 262732 58074209 ~ 58078146 (-)
G1566972 NA other upstream 354493 58167384 ~ 58167697 (-)
G1567080 NA other upstream 597608 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1056472 58869363 ~ 58870007 (-)

Expression


Co-expression Network