dazl (dazl)


Basic Information

Item Value
gene id dazl
gene name dazl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57822733 ~ 57831166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001246339.1
GTTTGCGCGGCAGTGTGTTTAATTTATTCTGTTTTAACGGTTTTAGAAATGGATATtcagaaacagagagatggattTCAGACATCCCTAAATTTGAAGCTGTCAAATGGTTATATTTTACCTGAAGGTAGAATGACACCAAACACACTTTTTGTTGGAGGAATTGACATGAAGGTGGATGAGAATGAAATCCGGGACTTCTTTGCGAGATTTGGTGCGGTGAAGGAAGTGAAAATCATTACTTACCGTGGCGGCATCTGTAAAGGATATGGATTTGTTTACTTCAATGAAGATGTCGACATCCAAACCATCGTTGACCAACAGATCAGTTTTAAAGGGCGGAAACTGAAGCTGGGTCCAGCAATCATGAAGGAAAGGAGCTCACGTTCCATGCCGTCTCACGTGATTGGTCAGGTCCCCTGGATGAGCCCCTCCCAGTACATTTACTGCACCTGCTGCTCTCCTATGGGAGTGGGCGTGGCTCAGCCCCCACCTGTACTCAACGGGGGCAATCCCTACATCCAGCCTTACTCGTATAACGGCCTTCAAGGAGTCATGATGCCACAGATGCCCATGAGCTACTCACAAACCGCCTACGCGTACCAGTACGCCTCACACACTGGACCGGGGAGCAGAGGAACGGCTTGTCACCAGAATTTGTGGATGTGGAGCAGACTCTGCTGATCTGCTG

Function

symbol description
dazl Enables mRNA 3'-UTR binding activity; sequence-specific DNA binding activity; and translation activator activity. Acts upstream of or within 3'-UTR-mediated mRNA stabilization and negative regulation of gene silencing by miRNA. Located in cytoplasm. Is expressed in blastodisc; gonad; unfertilized egg; and yolk. Orthologous to several human genes including DAZL (deleted in azoospermia like).

NR:

description
deleted in azoospermia-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001246339.1 True 691 mRNA 0.48 15 57822733 57831166

Neighbor

gene id symbol gene type direction distance location
rftn1a LOC106588880 coding downstream 9842 57766500 ~ 57812891 (-)
LOC110496588 LOC106588875 coding downstream 107080 57699114 ~ 57715653 (-)
LOC118941192 NA coding downstream 165918 57652774 ~ 57656815 (-)
fam221a fam221a coding downstream 194424 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 242270 57577413 ~ 57580463 (-)
LOC110496952 LOC106588868 coding upstream 7553 57838719 ~ 57848361 (-)
LOC110496593 tbc1d5 coding upstream 108447 57939613 ~ 57966150 (-)
LOC110496867 LOC106588885 coding upstream 165761 57996927 ~ 58019631 (-)
sgo1 LOC106588889 coding upstream 382063 58213229 ~ 58223674 (-)
LOC110496870 LOC106588890 coding upstream 407304 58238470 ~ 58295781 (-)
G1566713 NA non-coding downstream 57562 57764502 ~ 57765171 (-)
G1566715 NA non-coding downstream 60754 57756382 ~ 57761979 (-)
G1566714 NA non-coding downstream 62358 57692911 ~ 57760375 (-)
G1566748 NA non-coding downstream 88342 57734123 ~ 57734391 (-)
G1566716 NA non-coding downstream 130276 57692082 ~ 57692457 (-)
G1566828 NA non-coding upstream 30740 57861906 ~ 57863122 (-)
G1566839 NA non-coding upstream 67795 57898961 ~ 57901421 (-)
G1566857 NA non-coding upstream 99855 57931021 ~ 57931904 (-)
G1566806 NA non-coding upstream 112491 57943657 ~ 57944600 (-)
G1566871 NA non-coding upstream 142239 57973405 ~ 57976522 (-)
LOC110496560 LOC106588840 other downstream 1085386 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1334444 56481468 ~ 56488289 (-)
G1563253 NA other downstream 3157090 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 3169883 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3927784 53887137 ~ 53895002 (-)
G1566899 NA other upstream 196345 58027511 ~ 58027790 (-)
G1566923 NA other upstream 244457 58074209 ~ 58078146 (-)
G1566972 NA other upstream 336218 58167384 ~ 58167697 (-)
G1567080 NA other upstream 579333 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1038197 58869363 ~ 58870007 (-)

Expression


Co-expression Network