LOC110496593 (tbc1d5)


Basic Information

Item Value
gene id LOC110496593
gene name tbc1d5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57939613 ~ 57966150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953348.1
CGCACGCGCTGAAATCACTTAATCTCCCTAGTCACATGTTCTATCAGCTGTGCCTCAACACACTTTACTCGCGACTGTTTACTATCAGAAGACAGCACAGAATGGGGAGCCCCGCATGAGCAGAACAGATAGCCTAAACCCTCATCTTTCCTGAGTCTCGGCTGAGGAGGAACACAACGTTGTGACTGTTCTGTTGTGTGGTGGTCATGCAGCACCCTAACTTCGAGACCCACCACCCTCTCCAGCCTGAGGGAGAGCAGGAGCCTGGCTTCGACCCTCTCCACAACTTCAACAAGAACCACAGCCGTGGAGGATCTCTGGATAGTAGCAGGTTGTCTTACTCGGAGTCTGAGTCCACCTTCCTTTCCTACAGGAAAGAATGGGATGACTTGTTCTTGAACAGTAATTATCTGGCCAGGATTCGGCAGGCAGGCATCAGTGGCCGATTGCGGAGCAGCCGATTCCGCAGTGTGTGCTGGAAGTTGTACCTGGAGGTCCTTCCTGAGGATAAGAGCCAATGGctcaacaagacaaaggagctgcgAGCCCAGTATGAGAAGATCAAAGAGACTCACATCACCAACCCCCGTAAAGCTGCAGGCCAGCAGGACCTGGTGGTCAACAATCCACTCTCACAAGACGAGGGGAGCCTGTGGAACAAGTTCTTCCAGGACAAAGAGCTGAGAGGGATGATCAAACAGGATGTGATGAGAACCTTTCCTGAGATGCGTTACTTCCAAGACGAGGCTGTCAGGACCAAGCTGACAGACATCTTGTTCTGTTACGCCCGAGAGAACGAACTGCTACTGTACAAACAGGGAATGCATGAGTTGTTGGCTCCTATCGTGTTTGTCCTGCACTGTGACCATCAGGCCTTTCAGCACGCCAGCGAGACCGCGTACCCCAGTGAGGAGATGCTGTCTCTACTGAATCCTATGTTCCATGAGCATGATGCCTATGCCATGTTCTCCCAGCTGATGGAGACAGCAGAACCCTGGTTCTCCAGCTTGGAGAGAGAAGTCAGAAGGGGGAAGGACGAGATGCTGACCAGCATGCCGTTCGCCCGTCCGCAAGACTCGGGGCCGTCTGTTGCCATAGTGACCAAAGTGAACCGCATCCAGGACCAACTGGTGAAGAAGCACGACGTGGAGCTGCACATGCACGTCAACCGCCTGGAGATCGCCCCGCAGATATACGGCATTCGCTGGGTGCGTCTGCTGTTTGGCCGTGAGTTCCCCCTGCAGGACCTGTTGGTGGTGTGGGATGCCCTGTTCGCTGACAGCATCACTCTAGACCTGGTGGACTATGTCTTCGTAGCCATGCTGCTCTACATCAGAGATGCCTTGATAGCGAGTAACTTCCAGACCTGTCTTGGCCTTCTAATGCACTACCCACCTATAGGAGACATCCACACCCTACTACACAAGGCTCTGTTCCTCAGAGATCCCAAGAACAATCCTCGGCCAGCCAACTACCAGTTTCAACAGAATCTGGACTATTACAAGACCAGAGGAGCGGACCTGGTCAACAACACCCgtGCCAGTGGCAAGATGGCTCCTCTCAACATCAACAAGGTCTCCAGCAGTCTGCTCAGCTTCGGTAGGAAGCTCATCGCCCCTGCTCTGTCAGGGGGTGGCTCCAGCGGCATCTCTCCAATTAATAGCGAGGTCCTGTCTGCCCCCTCCCCCGTCACTGTGGGTCCTCACCCCCAGGCTGAGCCCTTGTTGTCTGGCCATGCACCCCAGCAGACACCACCCCATTCCCAGCACCACCGCCTACTCAAGTCTGAGAGTATGCCTGTCCACCTGAGCAAAGTTTCAGGAGGAGTCTCTCAGGTTCCTGTCCCAGCCCACATTTTCTCTGACACAAAAGgcCAAATCTCCAGGACAGCTAGCTCCTCCCCCAGCATAGAGAGCCTCTCTGGAGGGCGGGGTCACACCACTGCATCCCCACCCCTTCCTGTCACCAGTGACACCAGCACGTCGTCTCCACCCCTCTCGGCCACCAAGAAGGATTCCTTCTTCAACATCACTCGCTCCCGCTCCCACAGCAAGACCATGATGGGCAAGAAAGAGGCTGAGGAGGAGTTGGAGGCCCAGGTGTCCTTCCTGCAAGGTCAGATCAACGACCTGGAGGCCATGAGCAAGTACTGTGCCAAGATGATGAACACACATATTGGTAAGATCCAGGAGGTGATCCTACAGGAGCACCTGGAGAAAGAAGACGAGGTGTTGGTGTCACTGGCTGGActcaaacagATCAAGGACATCCTGAAGGGAGCGCTGCGTTTCAACCAGAGCCTGCTGGAGGCTGATGAGAACGAGGAGATCACCATCGCTGACGACCACTATGACATCGCCTCCAATGCCGCTGCAGCCATCGTAGAACAGCTCGCCAACCGTCACCATGCCAAACACCCCTTCCAGGCCACACCGCAGCGTGGCGACGGTGATGGAGAACAGAAGGACCGAGAGGAGGAAGAGCATGAGCACACGGAGTCAGAGCAACAGGCGTCTCCCCCAGAGTCATCTCTGTCTGTGGGTTCTGAGGGGAAGAACTGGGACGACTACATCCTGGTCTCGCAAGACGGAGAGCTGCAGCCCACCGAGGGAGGGGCCGAGAGGACCCCTCCAATCAGACAGCTCCGTGGCTCGCTCAGGGTGGAGCCGGAGGGCGTGGGGGTGTTCCAGGACCCCCTAATGGGTGCAGCGTCTGGCTCCTCCAGCCCAGACGAGGGCAGCACTCACAGCAAAGACTATGACTTCACCATCGTCAACCCCCAGGACCTGTGAGAGACTATACTGTACTGATTTGGGTGGGAGTTACCCCTAACCAGAGATGTAGGATCAGTTTATCAATCCCCTTATCCCCACCTTAACCATTAGGGggagaaatgcaaaactgaccttagatcagtctTTAGGGGGTTACTTCATCCCAACCTGGAGGATATGCTGTTTCACAGGGGCAAACCAATGTGCCACTGCTGGATGAAACTTGCACATGTGGACTGGGCTATGACAGCCAACCTACTGTCAGGCAGTCGCCAATACTTTATCATTTCCTGTCTGTCCTCATGTCTGACACATTACCCTCTCTAACCTGATCTGTATTCCTTGAATACTATAGATCTCTCCTATGCCTATTGCCTGCCCTCCTGTATGCTTGGGTCTTAGTAGTTATCCAACCCCACCTCTGACTTCAAGACAAGTGACTTTAATAGTAATACCCATTTTGCCACGAGATGGCACCACTAGACAGTTCACTACAGGCTACCCTCAGGAGCTGGAATTCATACTGCATTTATCAGTGTGGGGAAtccttttccttctctctgtatgTAGCAGTAATTGAAGGGTAGGGTAGTACCCTGTTTCTCCAGGTAGGGGAGCTGTCTGTCCATCTAATGCCTGTGTCTAAAGATAACTTGTCTTACCGCCATTCATCTCTTATTTGATTGGTCTTTAACTGTTCAAGAGAAGTTGCTCctaacagatctaggatcagattcccaATCGCTAGTCCTTCACCTACCATTAGGGGGATTTTAAAATATCTGATTCTGTATCGGTTGTTAGGGACAACttctaaccagtgcctgtaaaTCATTGACAGATTACCtgactccctctttctccttgaCGTTGTTAGAAGCTATTTTAACCTGCACTGCATTACAAGGTGaaagtttttgtttttttaagaaaTTAATTCAAATTTATCTATGGAATAATAACATAGGTTTCATTATTTCCGGTGTCCTTGTATTTAGTTCTCTTGCTTCCTGTGGTAGCCAAGTAAAGCATTGCACATAAGGGATGTCCCTATAACCCAGATTAACTAGACCAATAAAAGCATTGCTCTTGCTAAAGTA
>XM_036953349.1
CGCACGCGCTGAAATCACTTAATCTCCCTAGTCACATGTTCTATCAGCTGTGCCTCAACACACTTTACTCGCGACTGTTTACTATCAGAAGACAGCACAGAATGGGGAGCCCCGCATGAGCAGAACAGATAGCCTAAACCCTCATCTTTCCTGAGTCTCGGCTGAGGAGGAACACAACGTTGTGACTGTTCTGTTGTGTGGTGGTCATGCAGCACCCTAACTTCGAGACCCACCACCCTCTCCAGCCTGAGGGAGAGCAGGAGCCTGGCTTCGACCCTCTCCACAACTTCAACAAGAACCACAGCCGTGGAGGATCTCTGGATAGTAGCAGGTTGTCTTACTCGGAGTCTGAGTCCACCTTCCTTTCCTACAGGAAAGAATGGGATGACTTGTTCTTGAACAGTAATTATCTGGCCAGGATTCGGCAGGCAGGCATCAGTGGCCGATTGCGGAGCAGCCGATTCCGCAGTGTGTGCTGGAAGTTGTACCTGGAGGTCCTTCCTGAGGATAAGAGCCAATGGctcaacaagacaaaggagctgcgAGCCCAGTATGAGAAGATCAAAGAGACTCACATCACCAACCCCCGTAAAGCTGCAGGCCAGCAGGACCTGGTGGTCAACAATCCACTCTCACAAGACGAGGGGAGCCTGTGGAACAAGTTCTTCCAGGACAAAGAGCTGAGAGGGATGATCAAACAGGATGTGATGAGAACCTTTCCTGAGATGCGTTACTTCCAAGACGAGGCTGTCAGGACCAAGCTGACAGACATCTTGTTCTGTTACGCCCGAGAGAACGAACTGCTACTGTACAAACAGGGAATGCATGAGTTGTTGGCTCCTATCGTGTTTGTCCTGCACTGTGACCATCAGGCCTTTCAGCACGCCAGCGAGACCGCGTACCCCAGTGAGGAGATGCTGTCTCTACTGAATCCTATGTTCCATGAGCATGATGCCTATGCCATGTTCTCCCAGCTGATGGAGACAGCAGAACCCTGGTTCTCCAGCTTGGAGAGAGAAGTCAGAAGGGGGAAGGACGAGATGCTGACCAGCATGCCGTTCGCCCGTCCGCAAGACTCGGGGCCGTCTGTTGCCATAGTGACCAAAGTGAACCGCATCCAGGACCAACTGGTGAAGAAGCACGACGTGGAGCTGCACATGCACGTCAACCGCCTGGAGATCGCCCCGCAGATATACGGCATTCGCTGGGTGCGTCTGCTGTTTGGCCGTGAGTTCCCCCTGCAGGACCTGTTGGTGGTGTGGGATGCCCTGTTCGCTGACAGCATCACTCTAGACCTGGTGGACTATGTCTTCGTAGCCATGCTGCTCTACATCAGAGATGCCTTGATAGCGAGTAACTTCCAGACCTGTCTTGGCCTTCTAATGCACTACCCACCTATAGGAGACATCCACACCCTACTACACAAGGCTCTGTTCCTCAGAGATCCCAAGAACAATCCTCGGCCAGCCAACTACCAGTTTCAACAGAATCTGGACTATTACAAGACCAGAGGAGCGGACCTGGTCAACAACACCCgtGCCAGTGGCAAGATGGCTCCTCTCAACATCAACAAGGTCTCCAGCAGTCTGCTCAGCTTCGGTAGGAAGCTCATCGCCCCTGCTCTGTCAGGGGGTGGCTCCAGCGGCATCTCTCCAATTAATAGCGAGGTCCTGTCTGCCCCCTCCCCCGTCACTGTGGGTCCTCACCCCCAGGCTGAGCCCTTGTTGTCTGGCCATGCACCCCAGCAGACACCACCCCATTCCCAGCACCACCGCCTACTCAAGTCTGAGAGTATGCCTGTCCACCTGAGCAAAGgcCAAATCTCCAGGACAGCTAGCTCCTCCCCCAGCATAGAGAGCCTCTCTGGAGGGCGGGGTCACACCACTGCATCCCCACCCCTTCCTGTCACCAGTGACACCAGCACGTCGTCTCCACCCCTCTCGGCCACCAAGAAGGATTCCTTCTTCAACATCACTCGCTCCCGCTCCCACAGCAAGACCATGATGGGCAAGAAAGAGGCTGAGGAGGAGTTGGAGGCCCAGGTGTCCTTCCTGCAAGGTCAGATCAACGACCTGGAGGCCATGAGCAAGTACTGTGCCAAGATGATGAACACACATATTGGTAAGATCCAGGAGGTGATCCTACAGGAGCACCTGGAGAAAGAAGACGAGGTGTTGGTGTCACTGGCTGGActcaaacagATCAAGGACATCCTGAAGGGAGCGCTGCGTTTCAACCAGAGCCTGCTGGAGGCTGATGAGAACGAGGAGATCACCATCGCTGACGACCACTATGACATCGCCTCCAATGCCGCTGCAGCCATCGTAGAACAGCTCGCCAACCGTCACCATGCCAAACACCCCTTCCAGGCCACACCGCAGCGTGGCGACGGTGATGGAGAACAGAAGGACCGAGAGGAGGAAGAGCATGAGCACACGGAGTCAGAGCAACAGGCGTCTCCCCCAGAGTCATCTCTGTCTGTGGGTTCTGAGGGGAAGAACTGGGACGACTACATCCTGGTCTCGCAAGACGGAGAGCTGCAGCCCACCGAGGGAGGGGCCGAGAGGACCCCTCCAATCAGACAGCTCCGTGGCTCGCTCAGGGTGGAGCCGGAGGGCGTGGGGGTGTTCCAGGACCCCCTAATGGGTGCAGCGTCTGGCTCCTCCAGCCCAGACGAGGGCAGCACTCACAGCAAAGACTATGACTTCACCATCGTCAACCCCCAGGACCTGTGAGAGACTATACTGTACTGATTTGGGTGGGAGTTACCCCTAACCAGAGATGTAGGATCAGTTTATCAATCCCCTTATCCCCACCTTAACCATTAGGGggagaaatgcaaaactgaccttagatcagtctTTAGGGGGTTACTTCATCCCAACCTGGAGGATATGCTGTTTCACAGGGGCAAACCAATGTGCCACTGCTGGATGAAACTTGCACATGTGGACTGGGCTATGACAGCCAACCTACTGTCAGGCAGTCGCCAATACTTTATCATTTCCTGTCTGTCCTCATGTCTGACACATTACCCTCTCTAACCTGATCTGTATTCCTTGAATACTATAGATCTCTCCTATGCCTATTGCCTGCCCTCCTGTATGCTTGGGTCTTAGTAGTTATCCAACCCCACCTCTGACTTCAAGACAAGTGACTTTAATAGTAATACCCATTTTGCCACGAGATGGCACCACTAGACAGTTCACTACAGGCTACCCTCAGGAGCTGGAATTCATACTGCATTTATCAGTGTGGGGAAtccttttccttctctctgtatgTAGCAGTAATTGAAGGGTAGGGTAGTACCCTGTTTCTCCAGGTAGGGGAGCTGTCTGTCCATCTAATGCCTGTGTCTAAAGATAACTTGTCTTACCGCCATTCATCTCTTATTTGATTGGTCTTTAACTGTTCAAGAGAAGTTGCTCctaacagatctaggatcagattcccaATCGCTAGTCCTTCACCTACCATTAGGGGGATTTTAAAATATCTGATTCTGTATCGGTTGTTAGGGACAACttctaaccagtgcctgtaaaTCATTGACAGATTACCtgactccctctttctccttgaCGTTGTTAGAAGCTATTTTAACCTGCACTGCATTACAAGGTGaaagtttttgtttttttaagaaaTTAATTCAAATTTATCTATGGAATAATAACATAGGTTTCATTATTTCCGGTGTCCTTGTATTTAGTTCTCTTGCTTCCTGTGGTAGCCAAGTAAAGCATTGCACATAAGGGATGTCCCTATAACCCAGATTAACTAGACCAATAAAAGCATTGCTCTTGCTAAAGTA

Function

symbol description
tbc1d5 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in neural crest. Orthologous to human TBC1D5 (TBC1 domain family member 5).

NR:

description
TBC1 domain family member 5

GO: NA

KEGG:

id description
K18469 TBC1D5; TBC1 domain family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953348.1 False 3874 mRNA 0.52 23 57939613 57966150
XM_036953349.1 True 3817 mRNA 0.52 22 57939613 57966150

Neighbor

gene id symbol gene type direction distance location
LOC110496952 LOC106588868 coding downstream 91252 57838719 ~ 57848361 (-)
dazl dazl coding downstream 108447 57822733 ~ 57831166 (-)
rftn1a LOC106588880 coding downstream 126722 57766500 ~ 57812891 (-)
LOC110496588 LOC106588875 coding downstream 223960 57699114 ~ 57715653 (-)
LOC118941192 NA coding downstream 282798 57652774 ~ 57656815 (-)
LOC110496867 LOC106588885 coding upstream 30777 57996927 ~ 58019631 (-)
sgo1 LOC106588889 coding upstream 247079 58213229 ~ 58223674 (-)
LOC110496870 LOC106588890 coding upstream 272320 58238470 ~ 58295781 (-)
LOC110496599 LOC106588891 coding upstream 336677 58302827 ~ 58306500 (-)
LOC110496600 ubql4 coding upstream 341224 58307374 ~ 58319520 (-)
G1566857 NA non-coding downstream 7709 57931021 ~ 57931904 (-)
G1566839 NA non-coding downstream 38192 57898961 ~ 57901421 (-)
G1566828 NA non-coding downstream 76491 57861906 ~ 57863122 (-)
G1566713 NA non-coding downstream 174442 57764502 ~ 57765171 (-)
G1566715 NA non-coding downstream 177634 57756382 ~ 57761979 (-)
G1566871 NA non-coding upstream 7255 57973405 ~ 57976522 (-)
G1566879 NA non-coding upstream 25200 57991350 ~ 57991689 (-)
G1566880 NA non-coding upstream 26225 57992375 ~ 57992647 (-)
G1566883 NA non-coding upstream 28607 57994757 ~ 57995217 (-)
LOC110496560 LOC106588840 other downstream 1202266 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1451324 56481468 ~ 56488289 (-)
G1563253 NA other downstream 3273970 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 3286763 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 4044664 53887137 ~ 53895002 (-)
G1566899 NA other upstream 61361 58027511 ~ 58027790 (-)
G1566923 NA other upstream 109473 58074209 ~ 58078146 (-)
G1566972 NA other upstream 201234 58167384 ~ 58167697 (-)
G1567080 NA other upstream 444349 58410499 ~ 58411129 (-)
G1567875 NA other upstream 903213 58869363 ~ 58870007 (-)

Expression


Co-expression Network