LOC110496867 (LOC106588885)


Basic Information

Item Value
gene id LOC110496867
gene name LOC106588885
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57996927 ~ 58019631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953347.1
GATGACTGCATTGAATAGCATACAACTGAACTCACCGTGTATTGGTCGCTTCACCAGTTTTTCAACGGAATCCTTGTAGCATACCAGCTGGTCTGTAGCCTAATTCCGTGAACAGTCTCTGTCACTGTGGATTGCTTTGACTGATATTCCGGTTAGACCACCGATAGACTCGTTTTATTCCGTAGCTATTTGAGAAGGTCCGAAAGCGTGCAGCCAGCAGGGAACGACGGAATATGTTGCTACGTAGCTGATATGATATAGACACAATAGACCGACGActagtgtaaaagagagagatgaggtgatgtTCTGACTCACTGAGACAGCGTGGACATAAATCAAGACGATGAACTCTAGTATTTTACTACCTACGGCATATCGGAATCTCAACAGGAACCAGCAGCCAGCGGATGTCAGTGTATCACTCAGTCCCACATGTGATGGACCCCCAGCAGTGTGATGGAGGCCATGTGTCAGAGGGGTGTAACACTCCTGGTAATGGGGACCACCGGCCCCCTCCTGCCAAACTGGTCCGCCTGGAGTTGAACGGTGGGGGGGGGCTCTCAGGTCCACACCAGGGCAGGACGAGACAGGGGAGCCCAGGGGTCAGAACTTCGGCCCCCAAACTCACCACACCCGTACCACAACCCAAGAACTGGCATAAAAGAGGAAGCCTGCTGCCTGTGCTGTGTTTGGTGGAGCACAGAGAGAGCCCGGTCCCAGCAGTGgagcctgagaggagagaggagcatgcAGAGTTTGTACTGGTCAGGAGAGACCTGCTGTTTAACCAGCTGATAGAGATGGCTTTACTGGCCCTGGGCTACTCTCACAGCTCAGCAGCACAGGCCAaaggttcGATCCAGGTGGGTAGGTGGaaccctgtccctctgtcctgtGTGACTGATGCTCCTGATGCCACAGTGGCTGACATGCTACAGGACCTCTACCATGTGACCACCCTCAAGATCCAGCTCACCAGTTGTCCCATGTTGGAGGACCTCCCTCCAGAACAGTGGAGTCACTCCACAGTGAGAAACGCCCTGAAGGAGCTATTGAGAGACATGAACCAGAGCTCACTGGCCAAAGAGTGCCCTCTGTCCCAGAGTATGATCTCCTCCATTGTTAACAGCACCTACTATGCAAATGTGTCGGCCTCCAAGTGCCACGAGTTTGGCCATTGGTATAAGCACTTCATGAATACCAAAGGCATCATGGAGATTGACAGCTTCTCTGACCAATCCCAAACGAGCTCCACACACCCATCAACCAAACAATCATTCCCAGGCAGCACAGCCGAGCAGGTCTgctcctcacccctcccctttCCTCACGGGGGTGCCACCCACACTTCTGGGCGTAGTTGTCTGGCCCCAAGTCTCTGCCCCCCGGGGCTGGTGACcgcccccctcagcccccagctagTCAGCCCCCAACAGATAGTCATGGCCCAGTTCCTCAACCAGCAGTATGCAGTCAGCCATATGCTAGCCCAGCAAAGCCTGTCTGTATCTGTTTCCACCTCCCCCCAGCAGTTCCTCAACCACCCCCCTGTGGGGAGGCCTCCCCCCTCCCTGGCCCTAGCCAAGGGCCTCGACCCCCCGCCCCAGGGTGGACCACCAGGACCTGGGTCTGGGTCCCAGAGCCAGGTGTGTGGACCATCAGACATCTCATGTGAGATCTACCAGTGGGTGAGAGAGGAGCTGAAGAGAGCAGGCATCTCCCAGGCTGTGTTCGCCCGTGTGGCCTTCAACAGGACCcagGGCCTGCTGTCTGAGATCCTGCGTAAGGAGGAGGATCCTAAGAGTGCGTCTCAGTCTCTCCTGGTCAACCTGCGGTCCATGCAGAGTTTCCTACAGATACCGGAAGGTGACCGCGACCGTATCtaccaggaggagagagagaggagtctgaCCACGTCGACCATTATCAACCATTCACCCAACAACACTACCACACCACGCCACACACAGACCAGAAAGGAAGAGGGAGACTTTGTTAAGGCTGAAGATTGGCCCTCCCAGGTTTCCATTGTATTTCCTAaaGTGAGGCTGTCTCCAGTAGCAGTAGTAAACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGAGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTCTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTAAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACGTCAACAGTTCTATCTATGAGGAGATCCAACAGGAGATGAAGAGAGCCAAGGTTTCTCAGGCCATGTTTGCCAAGATGGCCGCGTCCAAGAGTCAGGGCTGGCTGTGTGAGCTGCTGCGCTGGAAGGAGGATCCGTCCCCGGAGAACCGAACCCTGTGGGAGAACCTGTGTATGATCCGGCGCTTCCTGAGTCTGGCCCAGATGGAACGAGATGCCATCTATGAACAGGAGAGCAACACTCTGCAACAACACTGTACAGACAGACTCACACAGCtagtcaacaacaacacactgCTCCAACGCCACTCCCCATTGcaacaacaacaccatcaacGAACACTGACCGCTCTGTCCCAGCTGCCCTTGCAGCCCCAGGCGGAGCCTCGCCTGCCGCCACGACAACCATCCACAGCATCACCGGCCGAGACTGAGGGGCGTAGGGGGCAACTGAGGACCTGGTGGGGAAGTAGTCAGGGTGATGGGAGGGAAGAGGATATTACTGGCAGGGGCAGTAGGGGTTGGGGCCAGGGCAGGGTTAGGGGTGTGTGTAACAATgacaaggaagggggagagggacggTGGGCGGGGGGCAGACAGACTAACGGCGAGGGCGATGGTGGGAGTGATGGCGAGGGGTTTCGGGTGTCCCGAGAGGCACAGGGGATCCTGCAGAGCTTCATCCAGGACGTTGGTCTGAACCCAGACGAGGAGGCTGTCCACACACTGTCAGCCCAGCTGGGCCTGCCCAAACACACCATCCTCAGCTTCTTCCACAGCCAGCACCACAGCTACACTCACCAGAACCATAGACAGCACTACAGTGAGATCCAACACAACCAACATCCGAGCCAGGACGACAACCACAGAGAGAATCACAACCAACACCACACGGACCAGGACCAGCTCTTCTATAATGGAGCAGGCCCAACCCAGCCTAAGAGAACTACAGGGGAGGAGTGGACCGTAGATCTCACTGGACAaatggggggggaggggaggatatgGAGCGGGAAGAGGAaatagaggggaagggggaggaggacgCCATTTTGAAAGAGTTGGATGTGAGCAGTCAGACTAACGCCGTCGCCACCCTAGAGGTGGAGCAACATGATTCTAACCAATCTGAGACTGCCCAACCACATGACTGATGAATAACATGAGTCCATCCACTAGTTGTCCCCTTTAACCCAATGAGAAGGCATCAATTTTATAGACTCATCTAGCTCTTCAGAAAATAATATTAGCCTTTTCTGAAGAATTTTAGTAATGAATGATGTGGTGTTATAGGTGTTTCCCTTATTTGTAATGAAACATTTCAATTAAAGACTAACTGTGAAAATAAATGAAATTATGTAGTTATACATGTATGCAGAGTtagtttaaaggcccagtgcagtcaaaaactagattttcctgtgttttggaTATATTTCctcactgaggttggaataaaaCAGTGACATTGTGAAAagtatgataatgccctttcagtgtaagagctgtttgaacatgtttgcctgttttggtggggtggagctttggcctgcctggtgacatcaccagacgCTAAATTAGTTAAtacaccaataagaaagagagttccaaacctctctgccaattaACAGCAAATTTTCAGTTTTCCCGtcctcactcagaccactcccagacagtcctagcaaaatttttgcttgagaaattgctatttgctaatatgctatttttgtttctttttgaccattttaactAAAAACAaccacagtaaggtacttaattgttacctagAAATTCTTTgacattgagataaaaatggctgcattggacctttaactgtTGAGGATCTAATTTGAAAGACATTATGCCAACAAATGCCTTGTTGTATGTGGCACTACCCATCTGTTCTATGCCTAGATCATCCTCTCGGGATTTAAAAGACATTGAAATGTGAATATTGATATTGATCCACTGTCAACAGCTGTATTATAGACACATGATACAGTATAGTGTTTTGGTTTCTTTCTCTTTTACAAAACTCTGACAACTATGCTTTCTTACATCGATCTGTCATAATGTCCACGTACTTGTCTCTTTGACTGACAGTAAAATGTAAAAGTGTCTTAAAGTCTTTGCTGATCAACATAGTTGAGGGACATCACTCAAATTTTGTATGCAAATTATTTCACTAGCAAATGTAGTGTAGGTCAATTGCCTAATTGTAGAAGAAAAGGCTAAATAtgcaaagggtgtgtgtgtgtgtgcattaattCGTTCCTATCTTTGAATCTGTTTTTgttgaaaataaaatgtattatttgttttAAGAGTTCATTCCATTGATGCATGAGTTATATTTGAAGTGGTCGTTTTAAACAGCAATGCATTGGATGCAGAATGACATTAAAGCTGTGATTTACTATTTGTTTCATCACACATTAAACACTTATAAAATGGA
>TU1792622
AAATTATGTAGTTATACATGTATGCAGAGTtagtttaaaggcccagtgcagtcaaaaactagattttcctgtgttttggaTATATTTCctcactgaggttggaataaaaCAGTGACATTGTGAAAagtatgataatgccctttcagtgtaagagctgtttgaacatgtttgcctgttttggtggggtggagctttggcctgcctggtgacatcaccagacgCTAAATTAGTTAAtacaccaataagaaagagagttccaaacctctctgccaattaACAGCAAATTTTCAGTTTTCCCGtcctcactcagaccactcccagacagtcctagcaaaatttttgcttgagaaattgctatttgctaatatgctatttttgtttctttttgaccattttaactAAAAACAaccacagtaaggtacttaattgttacctagAAATTCTTTgacattgagataaaaatggctgcattggacctttaactgtTGAGGATCTAATTTGAAAGACATTATGCCAACAAATGCCTTGTTGTATGTGGCACTACCCATCTGTTCTATGCCTAGATCATCCTCTCGGGATTTAAAAGACATTGAAATGTGAATATTGATATTGATCCACTGTCAACAGCTGTATTATAGACACATGATACAGTATAGTGTTTTGGTTTCTTTCTCTTTTACAAAACTCTGACAACTATGCTTTCTTACATCGATCTGTCATAATGTCCACGTACTTGTCTCTTTGACTGACAGTAAAATGTAAAAGTGTCTTAAAGTCTTTGCTGATCAACATAGTTGAGGGACATCACTCAAATTTTGTATGCAAATTATTTCACTAGCAAATGTAGTGTAGGTCAATTGCCTAATTGTAGAAGAAAAGGCTAAATAtgcaaagggtgtgtgtgtgtgtgcattaattCGTTCCTATCTTTGAATCTGTTTTTgttgaaaataaaatgtattatttgttttAAGAGTTCATTCCATTGATGCATGAGTTATATTTGAAGTGGTCGTTTTAAACAGCAATGCATTGGATGCAGAATGACATTAAAGCTGTGATTTACTATTTGTTTCATCACACATTAAACACTTATAAAATGGA
>TU1792623
ACTAACGGCGAGGGCGATGGTGGGAGTGATGGCGAGGGGTTTCGGGTGTCCCGAGAGGCACAGGGGATCCTGCAGAGCTTCATCCAGGACGTTGGTCTGAACCCAGACGAGGAGGCTGTCCACACACTGTCAGCCCAGCTGGGCCTGCCCAAACACACCATCCTCAGCTTCTTCCACAGCCAGCACCACAGCTACACTCACCAGAACCATAGACAGCACTACAGTGAGATCCAACACAACCAACATCCGAGCCAGGACGACAACCACAGAGAGAATCACAACCAACACCACACGGACCAGGACCAGCTCTTCTATAATGGAGCAGGCCCAACCCAGCCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953347.1 False 5022 mRNA 0.50 12 57996927 58019631
TU1792622 False 1104 lncRNA 0.35 1 57996927 57998030
TU1792623 True 340 lncRNA 0.58 1 57998442 57998781

Neighbor

gene id symbol gene type direction distance location
LOC110496593 tbc1d5 coding downstream 30777 57939613 ~ 57966150 (-)
LOC110496952 LOC106588868 coding downstream 148566 57838719 ~ 57848361 (-)
dazl dazl coding downstream 165761 57822733 ~ 57831166 (-)
rftn1a LOC106588880 coding downstream 184036 57766500 ~ 57812891 (-)
LOC110496588 LOC106588875 coding downstream 281274 57699114 ~ 57715653 (-)
sgo1 LOC106588889 coding upstream 193598 58213229 ~ 58223674 (-)
LOC110496870 LOC106588890 coding upstream 218839 58238470 ~ 58295781 (-)
LOC110496599 LOC106588891 coding upstream 283196 58302827 ~ 58306500 (-)
LOC110496600 ubql4 coding upstream 287743 58307374 ~ 58319520 (-)
LOC110496601 LOC106588893 coding upstream 329896 58349527 ~ 58412935 (-)
G1566883 NA non-coding downstream 1710 57994757 ~ 57995217 (-)
G1566880 NA non-coding downstream 4280 57992375 ~ 57992647 (-)
G1566879 NA non-coding downstream 5238 57991350 ~ 57991689 (-)
G1566871 NA non-coding downstream 20405 57973405 ~ 57976522 (-)
G1566806 NA non-coding downstream 52327 57943657 ~ 57944600 (-)
G1566893 NA non-coding upstream 1785 58021416 ~ 58021624 (-)
G1566903 NA non-coding upstream 10485 58030116 ~ 58030412 (-)
G1566906 NA non-coding upstream 15190 58034821 ~ 58035090 (-)
G1566923 NA non-coding upstream 54578 58074209 ~ 58078146 (-)
G1566952 NA non-coding upstream 107051 58126682 ~ 58126884 (-)
LOC110496560 LOC106588840 other downstream 1259580 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1508638 56481468 ~ 56488289 (-)
G1563253 NA other downstream 3331284 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 3344077 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 4101978 53887137 ~ 53895002 (-)
G1566899 NA other upstream 7880 58027511 ~ 58027790 (-)
G1566972 NA other upstream 147753 58167384 ~ 58167697 (-)
G1567080 NA other upstream 390868 58410499 ~ 58411129 (-)
G1567875 NA other upstream 849732 58869363 ~ 58870007 (-)

Expression


Co-expression Network