LOC110496595 (LOC106588888)


Basic Information

Item Value
gene id LOC110496595
gene name LOC106588888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58188792 ~ 58212558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572580.2
CAATGACAAATAAAAAAAGTAGGGATGAGCGCCATGTCTGATTCAAGCGTAGTGTAATAGAGAACGGGACATTTTAACGTTTTAGCTCCAGGGTCGGGGATCGCGTTCGGTCTCGGTATCGAGGATGTCCGAGGGCGCAGGTGTTCAGCAGGGCTCCCCGGCCATCGGTGCGGCGGGATCGGCTCCTGCGGCTCCGGGAGCCGGGGGAACGGAGGGTTCGGGCGCCACGGTAGGATCGGCACGAATCGCGGCGAAGAAGGCGCAGCTCCGCTCCTCCCCGCGCCCTAAGAAACTGGAGAAGCTCGGAGTGTATTCCTCTTGCAAGGCTGAGGGGGCCTGTAAGTGTAACGGCTGGAAGAGCCAGAACCCCCCTCCCACGCCGCCCCGTACGGACCAGCAGCCCAACACTGTCAACCTGCTGGAGCCCTGCCGCAGTTGTTCCCACACACTGGgTGACCATGTAACCCACCTAGAGAATGTCTCAGAGGAGGAGATGAACAGGCTACTGGGTATAGTCCTAGATGTGGAGTACCTGTACACATGTGTTCACAAAGAAGAGGATGCTGACACCAAACAAGTCTACTTCTCCCTATTCAAGCTGTTGAGGAAATGCATCCTACAGATGGGCAAACCTGTGGTGGAGGCGCAGGAAAGTCCTCCCTTTGAGAAACCCAGCATCGAACAGGGGGTGAATAACTTTGTCCAGTACAAGTTCAGCCATCTTCCCTCCAAGGAGCGTCAGACCATTGTGGAGCTGGCCAAGATGTTCCTCAACCAGATCAACTACTGGCAGCTGGAGACGCCCTCACAGAGACGACAGCGGGCGCCTGCTGATGATGCTGCTGGGTACAAAGTCAACTACACCAGATGGCTGTGCTACTGCAATGTCCCCCAGTTCTGTGACAGTCTACCGCGGTACGAAATGACCCAGATCTTCGGTCGGACCCTGCTGGGCTCAGTCTTCACTGTGATGAGGAAACAGCTGCTAGAGCAGGCCAGGCAGGAGAAGGATACGTTACCCCCGGAGAAACGCACTCTCATCCTTACACACTTCCCCAAATTCCTGTCCATGTTGGAGGAGGAAGTGTACAGTCACAGCTCTCCCATCTGGAGCGAAGACTTCCTGGTTGGATCCACAGGAGGACAGATCCCCATCCATACAGTGATCAGTGCACCCCCGGTGGCCAGGCCTCTGTACTACAGCACCAGCCCAGTATCAGTGGACCCATCCAGCTGTGGCAGTGTCAGTCCTGCCAGGAAGACAGCCTCTGCTCTGGAACCCAGCCCAGGTGGGCAGAAGCGGAAGCCATCGGAGCCCATCCCCCATGACGAGACTAAGAAGCTCAGGATCGTCGGCGACATCCCCATGGAACTCATCAACGAAGTCATGGCAACCATTACTGACCCGACCTCCATGCTGGGACCAGAGACCAGCCTGCTGTCGGCCCACTCAGCCCGTGATGAGGCGGCacgcctggaggagaggaggggggtgataGAGTTCCACGTCATCGGGAACTCCCTCAACCAGAAGCCCAACAAAAGGATCCTGATGTGGTTGGTGGGCCTCCAGAACGTCTTCTCCCACCAGCTGCCTCGCATGCCCAAAGAGTACATCACACGCCTCGTCTTCGACCCGAAGCACAAGACGCTGTCGCTGATCAAAGATGGCCGTGTGATTGGAGGAATCTGTTTTCGGATGTTTCCCTCACAGGGTTTCACAGAGATCGTGTTCTGTGCCGTCACCTCCAACGAGCAGGTCAAGGGGTATGGCACTCACCTGATGAACCACCTGAAAGAATATCACATCAAGCACGACATCCTTAACTTCCTCACCTATGCAGACGAGTACGCCATTGGCTACTTTAAAAAGCAGgGCTTCTCTAAAGACATCAAGGTTCCCAAGGCCAAGTATCTGGGCTACATCAAAGATTATGAGGGAGCGACGCTGATGGGCTGTGAGCTCAACCCCAGCATCCCTTACACCGAGTTCTCCGTCATCATCAAGAAACagaaggagatcatAAAGAAACTGATAGAGAGGAAGCAGGCTCAGATCAGAAAGGTCTACCCAGGACTTTCCTGTTTTAAGGAAGGAGTTCGGCAGATTCCCATTGAGAGCATTCCTGGAATACGAGAAACTGGATGGAAACCGGTGGGAAAAGGGAAGGAGCTGAAGGATCCAGATCAGCTGTACAGCACCCTGAAGACCATCTTACAACACGTTAAGaGTCACCAGAATGCCTGGCCGTTCATGGAACCAGTGAAGAAGACTGAGGCTCCTGGTTACTACCAAGTCATCCGCTTCCCCATGGACCTGAAGACGATGTCTGAGCGTCTGAAGAGCAGGTACTACACCACGCGGAAGCTCTTCATGGCCGACATGCAGCGCATCTTCACCAACTGTCGAGAGTACAACCCTCCAGAGAGCCAGTACTACAAGTGTGCCAACCTGCTAGAGAAGGTCTTCTACACTAAGATCAAGGAGGCGGGCCTCATTGAGAAGTGAAGGGATGGGAGGGGCTTCAAGGGAGATGGGAGGGGCTTAAAGGGAGAGTGTGGTTTAGTTCTAATGATTTTCAAAAGGTTTTTATTGTCTTAGTCTTTATTTTTCTACTCTTGTCAACTAGAAAAACAGTAGGATATGGTGTAGGGAGGAGGGTTTTAGGTTCATTGGAATACTCAATGTCTGCTGTTCTatcactctcttctctccatccttgTCATACTGCCTCCTCTGTCTTTTACTGTGTTTTATCAGTCTCTGCTTCTCCTTGCTCCACCTTGTCTTTGTTGACTCAGGAAAACAGATGTCATGTAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTTCTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTTCTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGTAGACGTCACATCTGTAAACAACTGGACTGTCTGGGAGAAACGGGAAGGGATAATCAGCCAGTTAGTTACTCAGCCATTCAGTCTGTCAATCTCCAGATTGGTGTTACTGGGTCGTAATGGTGCAGGATGAAGTTGCCCCtagggtcagtttagcattttccctaCTAATGGTAACCGTTATGATTGTGGGATGGGAAGCTGATCCttgatctgtacctaggggaaacctCTCCTCAGGAGCCATAGTAATCAGTCATTAGTTCTAATGTGTATGTTACCTAACGCGCGTGTGAGTGTACGCATGACGTCATGCGAGGTCTGTGTCTCAGAATGTATGAGGTCAAAGTTTCTATGTATGTTATTAGAGTTCATCCTGCCAAAAAAAGGAAAATTATATTTCAAATCCACATGTATACATTAAGTAATTCAAGAGGTTAAACCTCTTGAATTATTGAATGTATATtttcaatgtactgtatataagttACCCGTCTTGCTTGTCCATGTAAAAAGTCCCATAAGGCAAAAGGTGACCATGGAAATGCCCTTATTTATTTTTCAAGCAACTATTCAGCACCACATGGTGAATAACAACATTTTTGTTTTCCATCGAACTGTTTTGTGTTTTTAGGGAAATGCACGCTATGGCTTATTTATGTATAGTTCATCCTTATTTATGTACTATAATTTAAAGGAATAATGCTTAACAAAAGGTCTTAATTTATTTTGCCTAATTATTTCTGTCTAGCAAATGGAGATTGCTACCTTTGTACTTTGAAGATAAAAGAAAAGAGATTGTGCAGTACTATCTTGTTTTTCTGTTTTGTATGAAGATGTTTGTACTTTTTAAACTATAGGATAAATCTGGATTTTGTGATATGTCTTGAAGAGTTATTACATGGCCTTTGTACTATTGCTTTTAATGCCGTAGTTATAACCGATTTTATAGACTGATTAAAATAGAAGTGAAAATAA
>XM_021572581.2
CAATGACAAATAAAAAAAGTAGGGATGAGCGCCATGTCTGATTCAAGCGTAGTGTAATAGAGAACGGGACATTTTAACGTTTTAGCTCCAGGGTCGGGGATCGCGTTCGGTCTCGGTATCGAGGATGTCCGAGGGCGCAGGTGTTCAGCAGGGCTCCCCGGCCATCGGTGCGGCGGGATCGGCTCCTGCGGCTCCGGGAGCCGGGGGAACGGAGGGTTCGGGCGCCACGGTAGGATCGGCACGAATCGCGGCGAAGAAGGCGCAGCTCCGCTCCTCCCCGCGCCCTAAGAAACTGGAGAAGCTCGGAGTGTATTCCTCTTGCAAGGCTGAGGGGGCCTGTAAGTGTAACGGCTGGAAGAGCCAGAACCCCCCTCCCACGCCGCCCCGTACGGACCAGCAGCCCAACACTGTCAACCTGCTGGAGCCCTGCCGCAGTTGTTCCCACACACTGGgTGACCATGTAACCCACCTAGAGAATGTCTCAGAGGAGGAGATGAACAGGCTACTGGGTATAGTCCTAGATGTGGAGTACCTGTACACATGTGTTCACAAAGAAGAGGATGCTGACACCAAACAAGTCTACTTCTCCCTATTCAAGCTGTTGAGGAAATGCATCCTACAGATGGGCAAACCTGTGGTGGAGGCGCAGGAAAGTCCTCCCTTTGAGAAACCCAGCATCGAACAGGGGGTGAATAACTTTGTCCAGTACAAGTTCAGCCATCTTCCCTCCAAGGAGCGTCAGACCATTGTGGAGCTGGCCAAGATGTTCCTCAACCAGATCAACTACTGGCAGCTGGAGACGCCCTCACAGAGACGACAGCGGGCGCCTGCTGATGATGCTGCTGGGTACAAAGTCAACTACACCAGATGGCTGTGCTACTGCAATGTCCCCCAGTTCTGTGACAGTCTACCGCGGTACGAAATGACCCAGATCTTCGGTCGGACCCTGCTGGGCTCAGTCTTCACTGTGATGAGGAAACAGCTGCTAGAGCAGGCCAGGCAGGAGAAGGATACGTTACCCCCGGAGAAACGCACTCTCATCCTTACACACTTCCCCAAATTCCTGTCCATGTTGGAGGAGGAAGTGTACAGTCACAGCTCTCCCATCTGGAGCGAAGACTTCCTGGTTGGATCCACAGGAGGACAGATCCCCATCCATACAGTGATCAGTGCACCCCCGGTGGCCAGGCCTCTGTACTACAGCACCAGCCCAGTATCAGTGGACCCATCCAGCTGTGGCAGTGTCAGTCCTGCCAGGAAGACAGCCTCTGCTCTGGAACCCAGCCCAGGTGGGCAGAAGCGGAAGCCATCGGAGCCCATCCCCCATGACGAGACTAAGAAGCTCAGGATCGTCGGCGACATCCCCATGGAACTCATCAACGAAGTCATGGCAACCATTACTGACCCGACCTCCATGCTGGGACCAGAGACCAGCCTGCTGTCGGCCCACTCAGCCCGTGATGAGGCGGCacgcctggaggagaggaggggggtgataGAGTTCCACGTCATCGGGAACTCCCTCAACCAGAAGCCCAACAAAAGGATCCTGATGTGGTTGGTGGGCCTCCAGAACGTCTTCTCCCACCAGCTGCCTCGCATGCCCAAAGAGTACATCACACGCCTCGTCTTCGACCCGAAGCACAAGACGCTGTCGCTGATCAAAGATGGCCGTGTGATTGGAGGAATCTGTTTTCGGATGTTTCCCTCACAGGGTTTCACAGAGATCGTGTTCTGTGCCGTCACCTCCAACGAGCAGGTCAAGGGGTATGGCACTCACCTGATGAACCACCTGAAAGAATATCACATCAAGCACGACATCCTTAACTTCCTCACCTATGCAGACGAGTACGCCATTGGCTACTTTAAAAAGCAGgGCTTCTCTAAAGACATCAAGGTTCCCAAGGCCAAGTATCTGGGCTACATCAAAGATTATGAGGGAGCGACGCTGATGGGCTGTGAGCTCAACCCCAGCATCCCTTACACCGAGTTCTCCGTCATCATCAAGAAACagaaggagatcatAAAGAAACTGATAGAGAGGAAGCAGGCTCAGATCAGAAAGGTCTACCCAGGACTTTCCTGTTTTAAGGAAGGAGTTCGGCAGATTCCCATTGAGAGCATTCCTGGAATACAAACTGGATGGAAACCGGTGGGAAAAGGGAAGGAGCTGAAGGATCCAGATCAGCTGTACAGCACCCTGAAGACCATCTTACAACACGTTAAGaGTCACCAGAATGCCTGGCCGTTCATGGAACCAGTGAAGAAGACTGAGGCTCCTGGTTACTACCAAGTCATCCGCTTCCCCATGGACCTGAAGACGATGTCTGAGCGTCTGAAGAGCAGGTACTACACCACGCGGAAGCTCTTCATGGCCGACATGCAGCGCATCTTCACCAACTGTCGAGAGTACAACCCTCCAGAGAGCCAGTACTACAAGTGTGCCAACCTGCTAGAGAAGGTCTTCTACACTAAGATCAAGGAGGCGGGCCTCATTGAGAAGTGAAGGGATGGGAGGGGCTTCAAGGGAGATGGGAGGGGCTTAAAGGGAGAGTGTGGTTTAGTTCTAATGATTTTCAAAAGGTTTTTATTGTCTTAGTCTTTATTTTTCTACTCTTGTCAACTAGAAAAACAGTAGGATATGGTGTAGGGAGGAGGGTTTTAGGTTCATTGGAATACTCAATGTCTGCTGTTCTatcactctcttctctccatccttgTCATACTGCCTCCTCTGTCTTTTACTGTGTTTTATCAGTCTCTGCTTCTCCTTGCTCCACCTTGTCTTTGTTGACTCAGGAAAACAGATGTCATGTAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTTCTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTTCTACATGCAGAAACTCCACCTGTACAGCTAACCTAACCCTACATCTGTTCAGAGTCCTACTACATGTAGACGTCACATCTGTAAACAACTGGACTGTCTGGGAGAAACGGGAAGGGATAATCAGCCAGTTAGTTACTCAGCCATTCAGTCTGTCAATCTCCAGATTGGTGTTACTGGGTCGTAATGGTGCAGGATGAAGTTGCCCCtagggtcagtttagcattttccctaCTAATGGTAACCGTTATGATTGTGGGATGGGAAGCTGATCCttgatctgtacctaggggaaacctCTCCTCAGGAGCCATAGTAATCAGTCATTAGTTCTAATGTGTATGTTACCTAACGCGCGTGTGAGTGTACGCATGACGTCATGCGAGGTCTGTGTCTCAGAATGTATGAGGTCAAAGTTTCTATGTATGTTATTAGAGTTCATCCTGCCAAAAAAAGGAAAATTATATTTCAAATCCACATGTATACATTAAGTAATTCAAGAGGTTAAACCTCTTGAATTATTGAATGTATATtttcaatgtactgtatataagttACCCGTCTTGCTTGTCCATGTAAAAAGTCCCATAAGGCAAAAGGTGACCATGGAAATGCCCTTATTTATTTTTCAAGCAACTATTCAGCACCACATGGTGAATAACAACATTTTTGTTTTCCATCGAACTGTTTTGTGTTTTTAGGGAAATGCACGCTATGGCTTATTTATGTATAGTTCATCCTTATTTATGTACTATAATTTAAAGGAATAATGCTTAACAAAAGGTCTTAATTTATTTTGCCTAATTATTTCTGTCTAGCAAATGGAGATTGCTACCTTTGTACTTTGAAGATAAAAGAAAAGAGATTGTGCAGTACTATCTTGTTTTTCTGTTTTGTATGAAGATGTTTGTACTTTTTAAACTATAGGATAAATCTGGATTTTGTGATATGTCTTGAAGAGTTATTACATGGCCTTTGTACTATTGCTTTTAATGCCGTAGTTATAACCGATTTTATAGACTGATTAAAATAGAAGTGAAAATAA

Function

NR:

description
histone acetyltransferase KAT2B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0005634 nucleus cellular_component
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572580.2 False 4207 mRNA 0.48 18 58188792 58212558
XM_021572581.2 True 4204 mRNA 0.48 18 58188792 58212558

Neighbor

gene id symbol gene type direction distance location
LOC110496594 LOC106588886 coding upstream 1008 58182477 ~ 58187784 (+)
LOC110496868 LOC106588864 coding upstream 48173 58065484 ~ 58140619 (+)
LOC110496592 LOC106588883 coding upstream 253495 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 coding upstream 318431 57851179 ~ 57870361 (+)
oxnad1 oxnad1 coding upstream 428376 57744249 ~ 57760416 (+)
LOC110496954 LOC106588892 coding downstream 113572 58326130 ~ 58338076 (+)
LOC118941193 NA coding downstream 166137 58378682 ~ 58383251 (+)
LOC118941195 NA coding downstream 170757 58383315 ~ 58384050 (+)
LOC118941196 NA coding downstream 171545 58384103 ~ 58384651 (+)
LOC118941194 NA coding downstream 172738 58379624 ~ 58386065 (+)
G1566362 NA non-coding upstream 21589 58166996 ~ 58167203 (+)
G1566361 NA non-coding upstream 22728 58165856 ~ 58166064 (+)
G1566354 NA non-coding upstream 38555 58150012 ~ 58150237 (+)
G1566352 NA non-coding upstream 41797 58146790 ~ 58146995 (+)
G1566350 NA non-coding upstream 42467 58145375 ~ 58146325 (+)
G1566416 NA non-coding downstream 94619 58307177 ~ 58308879 (+)
G1566439 NA non-coding downstream 129882 58342440 ~ 58342708 (+)
G1566440 NA non-coding downstream 131098 58343656 ~ 58343941 (+)
G1566443 NA non-coding downstream 136972 58349530 ~ 58352481 (+)
G1566457 NA non-coding downstream 165659 58378217 ~ 58379396 (+)
G1566224 tbc1d5 other upstream 242029 57941097 ~ 57946763 (+)
LOC110496571 hoxa7aa other upstream 1076829 57109128 ~ 57112335 (+)
G1565672 NA other upstream 1156829 57031621 ~ 57031963 (+)
G1566445 LOC106588893 other downstream 151698 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 658341 58864013 ~ 58873692 (+)
dlx5a dlx5 other downstream 744563 58957121 ~ 58959671 (+)
sem1 shfm1 other downstream 812422 59024919 ~ 59035388 (+)
G1567716 asb4 other downstream 1097426 59309984 ~ 59312723 (+)

Expression


Co-expression Network