sgo1 (LOC106588889)


Basic Information

Item Value
gene id sgo1
gene name LOC106588889
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58213229 ~ 58223674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572582.2
GCATTTCAGATGATAGGAAATGACGCGTCCCAGTTCCCACCAATCAGCACTCGCAGCGCAGAATTCGAAAGTCAACCAGTAGAGAACGGATTTGTGGCTAGTTATTTGACTATGTTATGAGAATTCCTTGTGAAATATACTGATTCTAAttacatttcactgtactgtttataACTGAGGAGTTACGTACAGCCATGGCGAGGGAACGGGGCCAGAAGAAGTCTTTCCAGCAAAGCCTGGGTGACATCAAGGAAAAGATGATTGAGAAGAGGAACAAACGCCTGGCAAGCGCCTCTGCAGGCAACAGGGGACGGTCCAAAAGGATCAACAGAACCAGTGcGGGCAACGTGAAGCCAATTATCCTGAAGAACGTGCAGATCAATAACAAAGCCCTGGCTCTGGCCCTGCAGGCAGAGAAGGAGAAGGTGAGGCAGGCCAACGGTATCATCCTACAGATGAAGAGGGAGCAGCAggccctcttcctccacctcctcatgcTCAAGAAGAGGCTCAAAGATCAGGAGGCGCAGGCCAGTAATGTACAGACTGGACCTGCACAGCTCCTTGCTGAACTACCAAATCCAGTGGACACCTCCAGGAGAATTCAAAGCCAAGCTGCTCTGGAAGATCCTGTGAAGGACGAAGCTCCACTCTCACCCATCAGCTCAGAGCCTCAGTTTCCTAAAGGCGTGGGACAAAGCGAAAGTGACGGGCAAGTGGCGTTGCCAAAGACAGTGGCTGTGAGACGTCGCCGGGTGGAAGGTAGAGGGAGGCGATCTGAGCATGTGCGGAAAGGGCGCCGTTCCTCGTTCTATGAGCAGAACCACAGCGCCTCTCCAGAATCTCTCATACAGAAAAAGACTGAGGTCGTAATGGAGAGCCTGGTTCTAAACGCCAGGAGAGGCCAGAACAACATACAGGAAGTGAAGATGGAGAGAGGCAATCCGATTGGCTCAGAGGAGTTCCAGCAGCACTTCACCCCAGAGTCCCCGGCTAAACCAGCATATCAACAGCAGCAACCCCGGAACAAACCAAAACAGGCCCATCCACCGTGGCCTAAGCCCGAACTGGCTGCACGCAAGCAAGAGAGGGGCCTCAAACCGGACCGCCCCCCTCTGAAGAAACCCTGGGAGACCTCTAAACCCAGAGCCCGGTCCAAGAGCCGGGACCGCTCAGCCACACGGTCCAGAACCGGGGTGGCCTCTGCTGCATCTCTCAACACCTCCCTCAACACATCTCAGGGATTCAATGACACTTTTGATTTCGACTGCGAGGACGGGGTACACCTCACCCCCTTCAAGGGTAGCGGACCCAAGGATAACCCCCGAGACACACCCATacaggaggtggagagggaacAGAAACAGAACCCGAAGAGGACTCTGTCGTCATCTGAGTCTAGTTCATCTTCGTCTTCTGAGTCAGAAGACAGCCCCTACGTTCCTCAGAAACGGAAGAGGCGGAGCCCCCGGGACCGGGCCAAGCCTGCCCTCGCTCTTAGAACCAGAGGTCGACCCTGCAAAGCAGCTACAGACAAGGAGAACGGCCCCCCATCCAAACCAGAGTTGTTACATGCAACCAGAATGGAGGTCTGTTCCACCCCTGTGGTCCTTGACAAACAACTCAAGGAGGAACCAGAAAGGAGCCAGAGCTCGATTTGGATACAGCCGTTGTCTCTGGTTGCCATGGATGTTGCCTTAGAGACCAGCTTGTCTGAGTCAGAGGGTAGTCCCTACGTTCCTAAAAGCCGTGGCGTACGAAAGACACAGGACCACCCAGAGCAGGCCAAGCCCACCCCCACTCGCAGGGGACGGCCCTATAAAGCAGCCAGAGACAAGGAGAACGTCCCCCCTCCTAAACGACAGTTGTCACGTGTCACCAGAGTAGAGGCCAGTCCCACAGCTGGGCCCGCTGAGGTCCCTGAGACAGAAGTCCAATTCCCAGAAACACCTGGGAGTGTCTTTGTTGACAGTCCTGGTCCAATGGCAGAGCAGGGTCTTGAGGGCCACCCAGAGCAACACAGACAAGATAAAGAGGAGGCTCTGCTTCCTGTCACtccaggggtggaggaggagatgatgaGGATCGgcaatgtcctgtctggtttcAGGGACTCCCCCCGTGAGTCTCCTGGGATACCGACCAGCAGCACCCCCCAAAACCACATCTCACACATCCCCAAAACAAGCAAGAGGACAGGTGGGCTTAGTGTCAGGACTGGGCGGGGCTTCAGTCTGAGTGATGTGACCAATCTTACCCCTGCAGCCTATCGGAAGTTCTCTTTAAAGAGCTCCCGCCCTTCAGACCGATGTTCCACCCCTGTCCCCGGCCGCAAGAGGCGGTCCACGATGACAGTGGACTACAAAGAGCCATCGCTGCACGCGAAACTGAGACGTGGAGACAGGTTCACAGACACCAAGTTCCTCCTCTCTCCCGTCTTCAAACAGAAACCCAGGAAGTCCGTGAAGACTCGGCTGTCGTTGGAGAAATACAACGAGTCATTTGTGGGATGTCGCTGACATGTCTTCACATTGAACACACGTTTTAACCATTCAAGTTAGTTTGAGAGGATTTTTTGTTGTGAATACTTACGTTTTTGTCCAATGAAATGGAGGACAGCTTTGTGTCGATTCTTTGTTGTTCATATGCTGAATTTGGCCAAATCATCATGGGCATTGGTGACATTCAATCAAATCACCCAAAAATGTGTTCTCTATCTCGATGACTGTATGGATTGTTGTTAGCCACCCATAGAGGGCAACATTAGATCAATATTCTGGGAAGACATCACCCACAACATGTACCTTCATCAAATGCAGTATGTATATTTAGCTTGCCTTTTCAAGATCTTTGAATATGTATACTCTACATAACCCTGTTTTCATGTGTAACATGTTTTGATTTTATAATAAACTTTCAGTCCATAATTCCTATTCGGCT
>XM_021572583.2
TTGCATTTCAGATGATAGGAAATGACGCGTCCCAGTTCCCACCAATCAGCACTCGCAGCGCAGAATTCGAAAGTCAACCAGTAGAGAACGGATTTGTGGCTAGTTATTTGACTATGTTATGAGAATTCCTTGTGAAATATACTGATTCTAAttacatttcactgtactgtttataACTGAGGAGTTACGTACAGCCATGGCGAGGGAACGGGGCCAGAAGAAGTCTTTCCAGCAAAGCCTGGGTGACATCAAGGAAAAGATGATTGAGAAGAGGAACAAACGCCTGGCAAGCGCCTCTGCAGGCAACAGGGGACGGTCCAAAAGGATCAACAGAACCAGTGcGGGCAACGTGAAGCCAATTATCCTGAAGAACGTGCAGATCAATAACAAAGCCCTGGCTCTGGCCCTGCAGGCAGAGAAGGAGAAGGTGAGGCAGGCCAACGGTATCATCCTACAGATGAAGAGGGAGCAGCAggccctcttcctccacctcctcatgcTCAAGAAGAGGCTCAAAGATCAGGAGGCGCAGGCCAGTAATGTACAGACTGGACCTGCACAGCTCCTTGCTGAACTACCAAATCCAGTGGACACCTCCAGGAGAATTCAAAGCCAAGCTGCTCTGGAAGATCCTGTGAAGGACGAAGCTCCACTCTCACCCATCAGCTCAGAGCCTCAGTTTCCTAAAGGCGTGGGACAAAGCGAAAGTGACGGGCAAGTGGCGTTGCCAAAGACAGTGGCTGTGAGACGTCGCCGGGTGGAAGGTAGAGGGAGGCGATCTGAGCATGTGCGGAAAGGGCGCCGTTCCTCGTTCTATGAGCAGAACCACAGCGCCTCTCCAGAATCTCTCATACAGAAAAAGACTGAGGTCGTAATGGAGAGCCTGGTTCTAAACGCCAGGAGAGGCCAGAACAACATACAGGAAGTGAAGATGGAGAGAGGCAATCCGATTGGCTCAGAGGAGTTCCAGCAGCACTTCACCCCAGAGTCCCCGGCTAAACCAGCATATCAACAGCAGCAACCCCGGAACAAACCAAAACAGGCCCATCCACCGTGGCCTAAGCCCGAACTGGCTGCACGCAAGCAAGAGAGGGGCCTCAAACCGGACCGCCCCCCTCTGAAGAAACCCTGGGAGACCTCTAAACCCAGAGCCCGGTCCAAGAGCCGGGACCGCTCAGCCACACGGTCCAGAACCGGGGTGGCCTCTGCTGCATCTCTCAACACCTCCCTCAACACATCTCAGGGATTCAATGACACTTTTGATTTCGACTGCGAGGACGGGGTACACCTCACCCCCTTCAAGGGTAGCGGACCCAAGGATAACCCCCGAGACACACCCATacaggaggtggagagggaacAGAAACAGAACCCGAAGAGGACTCTGTCGTCATCTGAGTCTAGTTCATCTTCGTCTTCTGAGTCAGAAGACAGCCCCTACGTTCCTCAGAAACGGAAGAGGCGGAGCCCCCGGGACCGGGCCAAGCCTGCCCTCGCTCTTAGAACCAGAGGTCGACCCTGCAAAGCAGCTACAGACAAGGAGAACGGCCCCCCATCCAAACCAGAGTTGTTACATGCAACCAGAATGGAGGTCTGTTCCACCCCTGTGGTCCTTGACAAACAACTCAAGGAGGAACCAGAAAGGAGCCAGAGCTCGATTTGGATACAGCCGTTGTCTCTGGTTGCCATGGATGTTGCCTTAGAGACCAGCTTGTCTGAGTCAGAGGGTAGTCCCTACGTTCCTAAAAGCCGTGGCGTACGAAAGACACAGGACCACCCAGAGCAGGCCAAGCCCACCCCCACTCGCAGGGGACGGCCCTATAAAGCAGCCAGAGACAAGGAGAACGTCCCCCCTCCTAAACGACAGTTGTCACGTGTCACCAGAGTAGAGGCCAGTCCCACAGCTGGGCCCGCTGAGGTCCCTGAGACAGAAGTCCAATTCCCAGAAACACCTGGGAGTGTCTTTGTTGACAGTCCTGGTCCAATGGCAGAGCAGGGTCTTGAGGGCCACCCAGAGCAACACAGACAAGATAAAGAGGAGGCTCTGCTTCCTGTCACtccaggggtggaggaggagatgatgaGGATCGgcaatgtcctgtctggtttcAGGGACTCCCCCCGTGAGTCTCCTGGGATACCGACCAGCAGCACCCCCCAAAACCACATCTCACACATCCCCAAAACAAGCAAGAGGACAGCCTATCGGAAGTTCTCTTTAAAGAGCTCCCGCCCTTCAGACCGATGTTCCACCCCTGTCCCCGGCCGCAAGAGGCGGTCCACGATGACAGTGGACTACAAAGAGCCATCGCTGCACGCGAAACTGAGACGTGGAGACAGGTTCACAGACACCAAGTTCCTCCTCTCTCCCGTCTTCAAACAGAAACCCAGGAAGTCCGTGAAGACTCGGCTGTCGTTGGAGAAATACAACGAGTCATTTGTGGGATGTCGCTGACATGTCTTCACATTGAACACACGTTTTAACCATTCAAGTTAGTTTGAGAGGATTTTTTGTTGTGAATACTTACGTTTTTGTCCAATGAAATGGAGGACAGCTTTGTGTCGATTCTTTGTTGTTCATATGCTGAATTTGGCCAAATCATCATGGGCATTGGTGACATTCAATCAAATCACCCAAAAATGTGTTCTCTATCTCGATGACTGTATGGATTGTTGTTAGCCACCCATAGAGGGCAACATTAGATCAATATTCTGGGAAGACATCACCCACAACATGTACCTTCATCAAATGCAGTATGTATATTTAGCTTGCCTTTTCAAGATCTTTGAATATGTATACTCTACATAACCCTGTTTTCATGTGTAACATGTTTTGATTTTATAATAAACTTTCAGTCCATAATTCCTATTCGGCT
>XM_036953352.1
TTGCATTTCAGATGATAGGAAATGACGCGTCCCAGTTCCCACCAATCAGCACTCGCAGCGCAGAATTCGAAAGTCAACCAGTAGAGAACGGATTTGTGGCTAGTTATTTGACTATGTTATGAGAATTCCTTGTGAAATATACTGATTCTAAttacatttcactgtactgtttataACTGAGGAGTTACGTACAGCCATGGCGAGGGAACGGGGCCAGAAGAAGTCTTTCCAGCAAAGCCTGGGTGACATCAAGGAAAAGATGATTGAGAAGAGGAACAAACGCCTGGCAAGCGCCTCTGCAGGCAACAGGGGACGGTCCAAAAGGATCAACAGAACCAGTGcGGGCAACGTGAAGCCAATTATCCTGAAGAACGTGCAGATCAATAACAAAGCCCTGGCTCTGGCCCTGCAGGCAGAGAAGGAGAAGGTGAGGCAGGCCAACGGTATCATCCTACAGATGAAGAGGGAGCAGCAggccctcttcctccacctcctcatgcTCAAGAAGAGGCTCAAAGATCAGGAGGCGCAGGCCAGTAATGTACAGACTGGACCTGCACAGCTCCTTGCTGAACTACCAAATCCAGTGGACACCTCCAGGAGAATTCAAAGCCAAGCTGCTCTGGAAGATCCTGTGAAGGACGAAGCTCCACTCTCACCCATCAGCTCAGAGCCTCAGTTTCCTAAAGGCGTGGGACAAAGCGAAAGTGACGGGCAAGTGGCGTTGCCAAAGACAGTGGCTGTGAGACGTCGCCGGGTGGAAGGTAGAGGGAGGCGATCTGAGCATGTGCGGAAAGGGCGCCGTTCCTCGTTCTATGAGCAGAACCACAGCGCCTCTCCAGAATCTCTCATACAGAAAAAGACTGAGGTCGTAATGGAGAGCCTGGTTCTAAACGCCAGGAGAGGCCAGAACAACATACAGGAAGTGAAGATGGAGAGAGGCAATCCGATTGGCTCAGAGGAGTTCCAGCAGCACTTCACCCCAGAGTCCCCGGCTAAACCAGCATATCAACAGCAGCAACCCCGGAACAAACCAAAACAGGCCCATCCACCGTGGCCTAAGCCCGAACTGGCTGCACGCAAGCAAGAGAGGGGCCTCAAACCGGACCGCCCCCCTCTGAAGAAACCCTGGGAGACCTCTAAACCCAGAGCCCGGTCCAAGAGCCGGGACCGCTCAGCCACACGGTCCAGAACCGGGGTGGCCTCTGCTGCATCTCTCAACACCTCCCTCAACACATCTCAGGGATTCAATGACACTTTTGATTTCGACTGCGAGGACGGGGTACACCTCACCCCCTTCAAGGGTAGCGGACCCAAGGATAACCCCCGAGACACACCCATacaggaggtggagagggaacAGAAACAGAACCCGAAGAGGACTCTGTCGTCATCTGAGTCTAGTTCATCTTCGTCTTCTGAGTCAGAAGACAGCCCCTACGTTCCTCAGAAACGGAAGAGGCGGAGCCCCCGGGACCGGGCCAAGCCTGCCCTCGCTCTTAGAACCAGAGGTCGACCCTGCAAAGCAGCTACAGACAAGGAGAACGGCCCCCCATCCAAACCAGAGTTGTTACATGCAACCAGAATGGAGGTCTGTTCCACCCCTGTGGTCCTTGACAAACAACTCAAGGAGGAACCAGAAAGGAGCCAGAGCTCGATTTGGATACAGCCGTTGTCTCTGGTTGCCATGGATGTTGCCTTAGAGACCAGCTTGTCTGAGTCAGAGGGTAGTCCCTACGTTCCTAAAAGCCGTGGCGTACGAAAGACACAGGACCACCCAGAGCAGGCCAAGCCCACCCCCACTCGCAGGGGACGGCCCTATAAAGCAGCCAGAGACAAGGAGAACGTCCCCCCTCCTAAACGACAGTTGTCACGTGTCACCAGAGTAGAGGCCAGTCCCACAGCTGGGCCCGCTGAGGTCCCTGAGACAGAAGTCCAATTCCCAGAAACACCTGGGAGTGTCTTTGTTGACAGTCCTGGTCCAATGGCAGAGCAGGGTCTTGAGGGCCACCCAGgggtggaggaggagatgatgaGGATCGgcaatgtcctgtctggtttcAGGGACTCCCCCCGTGAGTCTCCTGGGATACCGACCAGCAGCACCCCCCAAAACCACATCTCACACATCCCCAAAACAAGCAAGAGGACAGGTGGGCTTAGTGTCAGGACTGGGCGGGGCTTCAGTCTGAGTGATGTGACCAATCTTACCCCTGCAGCCTATCGGAAGTTCTCTTTAAAGAGCTCCCGCCCTTCAGACCGATGTTCCACCCCTGTCCCCGGCCGCAAGAGGCGGTCCACGATGACAGTGGACTACAAAGAGCCATCGCTGCACGCGAAACTGAGACGTGGAGACAGGTTCACAGACACCAAGTTCCTCCTCTCTCCCGTCTTCAAACAGAAACCCAGGAAGTCCGTGAAGACTCGGCTGTCGTTGGAGAAATACAACGAGTCATTTGTGGGATGTCGCTGACATGTCTTCACATTGAACACACGTTTTAACCATTCAAGTTAGTTTGAGAGGATTTTTTGTTGTGAATACTTACGTTTTTGTCCAATGAAATGGAGGACAGCTTTGTGTCGATTCTTTGTTGTTCATATGCTGAATTTGGCCAAATCATCATGGGCATTGGTGACATTCAATCAAATCACCCAAAAATGTGTTCTCTATCTCGATGACTGTATGGATTGTTGTTAGCCACCCATAGAGGGCAACATTAGATCAATATTCTGGGAAGACATCACCCACAACATGTACCTTCATCAAATGCAGTATGTATATTTAGCTTGCCTTTTCAAGATCTTTGAATATGTATACTCTACATAACCCTGTTTTCATGTGTAACATGTTTTGATTTTATAATAAACTTTCAGTCCATAATTCCTATTCGGCT

Function

NR:

description
shugoshin 1-like isoform X1

GO: NA

KEGG:

id description
K11580 SGOL1; shugoshin-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572582.2 False 2940 mRNA 0.52 11 58213229 58223672
XM_021572583.2 False 2876 mRNA 0.52 11 58213229 58223674
XM_036953352.1 True 2894 mRNA 0.52 11 58213229 58223674

Neighbor

gene id symbol gene type direction distance location
LOC110496867 LOC106588885 coding downstream 193598 57996927 ~ 58019631 (-)
LOC110496593 tbc1d5 coding downstream 247079 57939613 ~ 57966150 (-)
LOC110496952 LOC106588868 coding downstream 364868 57838719 ~ 57848361 (-)
dazl dazl coding downstream 382063 57822733 ~ 57831166 (-)
rftn1a LOC106588880 coding downstream 400338 57766500 ~ 57812891 (-)
LOC110496870 LOC106588890 coding upstream 14796 58238470 ~ 58295781 (-)
LOC110496599 LOC106588891 coding upstream 79153 58302827 ~ 58306500 (-)
LOC110496600 ubql4 coding upstream 83700 58307374 ~ 58319520 (-)
LOC110496601 LOC106588893 coding upstream 125853 58349527 ~ 58412935 (-)
LOC110496602 LOC106588895 coding upstream 219974 58443648 ~ 58573152 (-)
G1566997 NA non-coding downstream 700 58210670 ~ 58212529 (-)
G1566987 NA non-coding downstream 13655 58193069 ~ 58199574 (-)
G1566966 NA non-coding downstream 52104 58160815 ~ 58161125 (-)
G1566960 NA non-coding downstream 64226 58148732 ~ 58149003 (-)
G1566958 NA non-coding downstream 66876 58145578 ~ 58146353 (-)
G1567068 NA non-coding upstream 135857 58359531 ~ 58360223 (-)
G1567288 NA non-coding upstream 243008 58466682 ~ 58467437 (-)
G1567326 NA non-coding upstream 310089 58533763 ~ 58536868 (-)
G1567334 NA non-coding upstream 329631 58553305 ~ 58555382 (-)
G1567348 NA non-coding upstream 353851 58577525 ~ 58577752 (-)
G1566972 NA other downstream 45532 58167384 ~ 58167697 (-)
G1566923 NA other downstream 135083 58074209 ~ 58078146 (-)
G1566899 NA other downstream 185439 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1475882 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1724940 56481468 ~ 56488289 (-)
G1567080 NA other upstream 186825 58410499 ~ 58411129 (-)
G1567875 NA other upstream 645689 58869363 ~ 58870007 (-)
G1567871 LOC106588914 other upstream 647263 58870937 ~ 58873691 (-)
G1567931 NA other upstream 781171 59004845 ~ 59074648 (-)
G1568017 NA other upstream 931354 59155028 ~ 59157044 (-)

Expression


Co-expression Network