LOC110496870 (LOC106588890)


Basic Information

Item Value
gene id LOC110496870
gene name LOC106588890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58238470 ~ 58295781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953371.1
AAGGCtagagagacagcgagggagtTGAGAGGAAGGAAAGTAGCCTACTACAGCAGTGAGAGGTAGACTATTGTGGAGGAGACAAGACTCATTCCGGACCCATCGCACAACTACGTTGCACTAGAGTCGATCTGGCTGCGGGTGAAAGACTTGAGCAGCAGGAGCTGAATTTGCATGAAGACGGACTATTGCCTGTTGATAAATTGACGAAAACCAGGATGTATTTTGATGGACCGCGTTCACAAAATGCTGATTGGTCCAGGGGTTGGGCTAGCCACGCCCCCTATGAGGAAACCCAGCTCATCGTGTGTTGTGTGCCGACTGAGGTTCAACTCGGAGagccaGGCCTCATCCCATTACAGCGGTACCAAACACTTCAAGAGGCTCAAAGCCCTCGACCCACTGGACTGCAAGACCAGAGCCCCTGACGCAGTCAGCAagagccctgtctctccctgccctgtgCCACCCAGCTCAGACTACAGTTCaacagATGTCACATTCAGACCCGTGTTGTCACCACCCTCTGCCTCTGGGGTGGCGCCATCGACCTGCAGCCCAGCAGTTTCAATGGAGACGCCCACTGACCCCTCTCTGTCGCCCTGTCCCAtggtggagaaggagaaggagatggaagGAGCGGTGGAGGAGGTCGGAGAGTCGGAGGAAGAGAAGGCTAAGAGATTgctctactgttctctctgcaaggTGGCCGTCAACTCTGCATCCCAGCTACAGGCTCACAACAGCGGCACGAAACACAAAACAATGCTGGAGGCCAGGAGCGGCGACGGAGCCATAAAGTCATTCCCCAGGTCAGGGGTCAAAGCCAAGCTGGCCCCTCCCACCGAGGTGTCAACGGGGCTCCAGAACAAAACTTTCCACTGTGAGATCTGCGATGTTCACGTCAACTCCGAGACACAACTCAAACAGCACATCAAAAGTAGAAGACATAAAGACCGAGTAGCAGGGAAGCCAGCCAAGCCCAAGTTCAGCCCATATGGTCTACCGCCCAAACGCAACCAGTCAGTTGGGATCGCTCTGAGGAAGGAGCAGGACTTGGCGAAGCCTCTCGCCTCGTGCCTCTTACAGCGCCATCTCTcccttgctgctgctgctgccatgGCAACCCTGTCCCCGTTTCATTTGCGCCCTGCCCCTATACCTGGCCCTGCCATCTTTCAGATTCAGGCCCTCCCCCAGACCTTGTTACATCCCGCCCCAGGACCTTTCCGTACGGCACATACATCAGTTCTGTTCTCACCGTACTGACCCAGACCTGCACCAGACTTGGCCTATACCTGACCCTGACCCAGACCCGTATCAGATGGACCAAAACCCAACAGAACCTGTGGGACCAGTGCAGACAAATTATGGTCTggaaagtgtgtatgtgtgtgtttgtgtaagtgtgtgtgcatttgtcaTGTGCGTGTGTTTGTCAAGAAATATGAGTATTGTTTTTCAATAAAGAATATGTTGCTGGCTGTGATGTTTTGGAAGTCTA
>XM_036953370.1
CAAGGCtagagagacagcgagggagtTGAGAGGAAGGAAAGTAGCCTACTACAGCAGTGAGAGGTAGACTATTGTGGAGGAGACAAGACTCATTCCGGACCCATCGCACAACTACGTTGCACTAGAGTCGATCTGGCTGCGGGTGAAAGACTTGAGCAGCAGGAGCTGAATTTGCATGAAGACGGACTATTGCCTGTTGATAAATTGACGAAAACCAGGATGTATTTTGGTAACGTCTGTCAGAACACCACCATGCACTCATTGGCCCGTGGGCCCTCTGCGAGCGGTACCCAAACATCCATGGCGCTGAAGCCCCTCCTCCCGTTCAGCCTGTTCCCTGGCTTCAGTGAAATGGACCGCGTTCACAAAATGCTGATTGGTCCAGGGGTTGGGCTAGCCACGCCCCCTATGAGGAAACCCAGCTCATCGTGTGTTGTGTGCCGACTGAGGTTCAACTCGGAGagccaGGCCTCATCCCATTACAGCGGTACCAAACACTTCAAGAGGCTCAAAGCCCTCGACCCACTGGACTGCAAGACCAGAGCCCCTGACGCAGTCAGCAagagccctgtctctccctgccctgtgCCACCCAGCTCAGACTACAGTTCaacagATGTCACATTCAGACCCGTGTTGTCACCACCCTCTGCCTCTGGGGTGGCGCCATCGACCTGCAGCCCAGCAGTTTCAATGGAGACGCCCACTGACCCCTCTCTGTCGCCCTGTCCCAtggtggagaaggagaaggagatggaagGAGCGGTGGAGGAGGTCGGAGAGTCGGAGGAAGAGAAGGCTAAGAGATTgctctactgttctctctgcaaggTGGCCGTCAACTCTGCATCCCAGCTACAGGCTCACAACAGCGGCACGAAACACAAAACAATGCTGGAGGCCAGGAGCGGCGACGGAGCCATAAAGTCATTCCCCAGGTCAGGGGTCAAAGCCAAGCTGGCCCCTCCCACCGAGGTGTCAACGGGGCTCCAGAACAAAACTTTCCACTGTGAGATCTGCGATGTTCACGTCAACTCCGAGACACAACTCAAACAGCACATCAAAAGTAGAAGACATAAAGACCGAGTAGCAGGGAAGCCAGCCAAGCCCAAGTTCAGCCCATATGGTCTACCGCCCAAACGCAACCAGTCAGTTGGGATCGCTCTGAGGAAGGAGCAGGACTTGGCGAAGCCTCTCGCCTCGTGCCTCTTACAGCGCCATCTCTcccttgctgctgctgctgccatgGCAACCCTGTCCCCGTTTCATTTGCGCCCTGCCCCTATACCTGGCCCTGCCATCTTTCAGATTCAGGCCCTCCCCCAGACCTTGTTACATCCCGCCCCAGGACCTTTCCGTACGGCACATACATCAGTTCTGTTCTCACCGTACTGACCCAGACCTGCACCAGACTTGGCCTATACCTGACCCTGACCCAGACCCGTATCAGATGGACCAAAACCCAACAGAACCTGTGGGACCAGTGCAGACAAATTATGGTCTggaaagtgtgtatgtgtgtgtttgtgtaagtgtgtgtgcatttgtcaTGTGCGTGTGTTTGTCAAGAAATATGAGTATTGTTTTTCAATAAAGAATATGTTGCTGGCTGTGATGTTTTGGAAGTCTA

Function

NR:

description
PREDICTED: zinc finger protein 385D-like isoform X1

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953371.1 False 1507 mRNA 0.54 7 58238470 58295780
XM_036953370.1 True 1630 mRNA 0.54 8 58238470 58295781

Neighbor

gene id symbol gene type direction distance location
sgo1 LOC106588889 coding downstream 14796 58213229 ~ 58223674 (-)
LOC110496867 LOC106588885 coding downstream 218839 57996927 ~ 58019631 (-)
LOC110496593 tbc1d5 coding downstream 272320 57939613 ~ 57966150 (-)
LOC110496952 LOC106588868 coding downstream 390109 57838719 ~ 57848361 (-)
dazl dazl coding downstream 407304 57822733 ~ 57831166 (-)
LOC110496599 LOC106588891 coding upstream 7046 58302827 ~ 58306500 (-)
LOC110496600 ubql4 coding upstream 11593 58307374 ~ 58319520 (-)
LOC110496601 LOC106588893 coding upstream 53746 58349527 ~ 58412935 (-)
LOC110496602 LOC106588895 coding upstream 147867 58443648 ~ 58573152 (-)
LOC110496603 NA coding upstream 293314 58589095 ~ 58609677 (-)
G1566997 NA non-coding downstream 25941 58210670 ~ 58212529 (-)
G1566987 NA non-coding downstream 38896 58193069 ~ 58199574 (-)
G1566966 NA non-coding downstream 77345 58160815 ~ 58161125 (-)
G1566960 NA non-coding downstream 89467 58148732 ~ 58149003 (-)
G1566958 NA non-coding downstream 92117 58145578 ~ 58146353 (-)
G1567068 NA non-coding upstream 63750 58359531 ~ 58360223 (-)
G1567288 NA non-coding upstream 170901 58466682 ~ 58467437 (-)
G1567326 NA non-coding upstream 237982 58533763 ~ 58536868 (-)
G1567334 NA non-coding upstream 257524 58553305 ~ 58555382 (-)
G1567348 NA non-coding upstream 281744 58577525 ~ 58577752 (-)
G1566972 NA other downstream 70773 58167384 ~ 58167697 (-)
G1566923 NA other downstream 160324 58074209 ~ 58078146 (-)
G1566899 NA other downstream 210680 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1501123 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1750181 56481468 ~ 56488289 (-)
G1567080 NA other upstream 114718 58410499 ~ 58411129 (-)
G1567875 NA other upstream 573582 58869363 ~ 58870007 (-)
G1567871 LOC106588914 other upstream 575156 58870937 ~ 58873691 (-)
G1567931 NA other upstream 709064 59004845 ~ 59074648 (-)
G1568017 NA other upstream 859247 59155028 ~ 59157044 (-)

Expression


Co-expression Network