LOC110496599 (LOC106588891)


Basic Information

Item Value
gene id LOC110496599
gene name LOC106588891
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58302827 ~ 58306500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572584.2
CACCTGCTCTTACctcacctttcctccctccccctctgcctctcccatGTGTCAGCTGAGCCACAGAGGGATCGGCAGGGATCGTCTAACCACAAACGAACTGCCCCTATCTACAGATAAAGGAAGAGGAGTGTTAGCCCTAACATTTTCTCTCATTCATTTTCGCTGTTTTTCCACCCTGGCTCcttgggagagaagagagtagcTTGTCTGctgttctctctttttctcttgttctgtcctccctgtcctgggATCTAATGAAGTAACAGCCCTAGGATATTGACTGAAACAGGTGGAGGATCCCGCCAGGGCTCAACACAGGCACAGTATGGGTGACGAAAGCTACAACTTTGTCTTCAAAGTGGTTCTGATTGGTGAGTCTGGTGTTGGGAAGAGCAACCTGCTGTCACGCTTCACCAAGAATGAGTTTAACCATGACAGCCGCACGACCATCGGAGTAGAGTTCAGCACCCGCACTGTTCAGCTGGATACCTTCACCATCAAGGCTCAGATCTGGGACACGGCAGGGCTGGAGAGATACAGAGCCATCACCTCAGcgtaCTACAGAGGAGCGGTGGGTGCTATGCTGGTGTATGACATCACCAAGCACCTAACCTATGAGAGTGTGGAACGTTGGCTGAAGGAGCTGTACGATCACGCTGACCCTCACATCCTGGTCATGCTGGTTGGCAACAAGAGTGACCTGGAGACCCTGAGGACTGTGCCCACCGTGGAGGTCAAGGAATTTGCAGAAAAGAAGGGCCTCTTGTTTATGGAGACGTCAGCTCTGGATTCGACCAACGTTGAAGCTGCTTTCCAGGAAGTTCTCACAGCGATCCACAAGAAGGTGGCCAGTCGAGAGGTGACCCGCGGGTCAATCAGTGCCGTGACCCTGTCCAGTGCTACTGGAACGGCTAGCGAAGTCCAGGAGGAACGTAGGACTTGCTGCAAGAACCTCTGACCGGTTCTGACTAGCTCTGGCCAGTTCTTTCCGGTATTAAACAGAATCTTCCTACTCTACCCTCATTCAGGATTAAGGGAGTCTATGTTGATGACTCCAGGAGGCATAGCtgtgggaagtaggggtgctcaGGGTGCTGCAGCACACACCTGAAAATGaaagtgcactgggcctttactagtattGTATTAGAAGACCCATataaattccccccccccccccccccccccccgtcggCAAAAATATCGCAGCACCCCAACCACCGAACACCTTCCCACATCTATGACAGGAGGGCTGTCTGAACCAAAGACCAGGCAGTCCACAAGACACAGGCCACATTTACACTTTGTCAATAAATACACTATTGGTGTCACCTATATTCTCCCTGTTTGGCGAAAGGTTGCAGACCACTTGAAAATATTTGTGTGGaaagtttttttaattttttatgctTGTTACCAAATACGTCTTGTTGGGGTTTATTTGAAAGGAGGAACTGCATTATTTTTGGATATTCATCATGTGCATGTATTGTTTGTAACCAAGATGAAAAAACTGTAGGAGGTTTTGTGTTGACTACATGGGAACACTTGTGAAGGTTTTAACTTAATGAATAGTATGTGTGGCTCGGAGACCAAGTAGAAAAGTGACTTGCTTCATGATTTTGAAACATTGACGCTCGATATTGCAACAACTATGCACTGTATCTAATCTTTTATGACAAACTTGTATCATTCATCTTTGTGATGGGAAAAATGCTTAGAGATTTCTGGTTTCATTCACTATTCATTTGCTATTCTCCTGTAGAGGGCAGTGCTGTTTTCAAGACATCTATGGTGTCTCCAAAATACACAGTTGAAAGTGATGTCTCCAAATCAGATCTGCTATTGATATCTAACTTTACCTCACACATATATAAGCAGTAGTTTATGAAGAGCACACACACAGGAGTTTCAATCTTATAATAAAACATCCCGAAATGGATGGCGTCATCTATAATTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572584.2 True 1967 mRNA 0.47 5 58302827 58306500

Neighbor

gene id symbol gene type direction distance location
LOC110496870 LOC106588890 coding downstream 7046 58238470 ~ 58295781 (-)
sgo1 LOC106588889 coding downstream 79153 58213229 ~ 58223674 (-)
LOC110496867 LOC106588885 coding downstream 283196 57996927 ~ 58019631 (-)
LOC110496593 tbc1d5 coding downstream 336677 57939613 ~ 57966150 (-)
LOC110496952 LOC106588868 coding downstream 454466 57838719 ~ 57848361 (-)
LOC110496600 ubql4 coding upstream 874 58307374 ~ 58319520 (-)
LOC110496601 LOC106588893 coding upstream 43027 58349527 ~ 58412935 (-)
LOC110496602 LOC106588895 coding upstream 137148 58443648 ~ 58573152 (-)
LOC110496603 NA coding upstream 282595 58589095 ~ 58609677 (-)
si:ch211-13c6.2 LOC106588899 coding upstream 322816 58629316 ~ 58640812 (-)
G1566997 NA non-coding downstream 90298 58210670 ~ 58212529 (-)
G1566987 NA non-coding downstream 103253 58193069 ~ 58199574 (-)
G1566966 NA non-coding downstream 141702 58160815 ~ 58161125 (-)
G1566960 NA non-coding downstream 153824 58148732 ~ 58149003 (-)
G1566958 NA non-coding downstream 156474 58145578 ~ 58146353 (-)
G1567068 NA non-coding upstream 53031 58359531 ~ 58360223 (-)
G1567288 NA non-coding upstream 160182 58466682 ~ 58467437 (-)
G1567326 NA non-coding upstream 227263 58533763 ~ 58536868 (-)
G1567334 NA non-coding upstream 246805 58553305 ~ 58555382 (-)
G1567348 NA non-coding upstream 271025 58577525 ~ 58577752 (-)
G1566972 NA other downstream 135130 58167384 ~ 58167697 (-)
G1566923 NA other downstream 224681 58074209 ~ 58078146 (-)
G1566899 NA other downstream 275037 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1565480 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1814538 56481468 ~ 56488289 (-)
G1567080 NA other upstream 103999 58410499 ~ 58411129 (-)
G1567875 NA other upstream 562863 58869363 ~ 58870007 (-)
G1567871 LOC106588914 other upstream 564437 58870937 ~ 58873691 (-)
G1567931 NA other upstream 698345 59004845 ~ 59074648 (-)
G1568017 NA other upstream 848528 59155028 ~ 59157044 (-)

Expression


Co-expression Network