LOC110496954 (LOC106588892)


Basic Information

Item Value
gene id LOC110496954
gene name LOC106588892
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58326130 ~ 58338076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572953.2
CTGCTTCCATCAACAGAAAAAACAGAGGGGATAACTTTTTGGAATTCAGCCCAATGGAGTTCTCTTTCATTCTCCTATCTCCCCTCCTCGGCTTGCaacgtctctccttctctctctctctctctttccctctaccctctctccctttctccccagaAAGGTAGACGGTTAAGAGCGTACTTTTACTGAAGAAACAAGTATCAGGTACCACGCAGCAGCCACAGCAGCATCTCTCAGGATGCATAGCTTCATGGGCGGGGGCCTTTTCTGTGCCATGGTGGGGAACATCCTGCTGGTGGTCTCAATGGCAACAGACTACTGGATGCAGTACCGCCTGTCAGGCAGCTTCGCCCACCAGGGCCTCTGGAGGTACTGCATGTCGGGCAAATGTTACATGCAGACGGACAGCATCGCGTACTGGAATGCCACCCGGGCCTTAATGATCCTGTCCGGGATGTCGTGCTTCGCGGGCATCATTGCGGGCATCCTCTCCTTTGCCCACTTCTCCGCCTTCGAGAGGTTCAACCGCTCCTTCGCTGCAGGGATCATGTTTTTCATCTCCACTTTATTTGTTCTGCTGGCGATGGCCATCTACACGGGTGTGACAGTGAACTTCCTGGGCAAGCGCTTCGGTGACTGGCGTTTCTCTTGGTCTTACATATTGGGCTGGGTGGCACTGCTCATGACCTTCTTTGCAGGGATATTTTACATGTGTGCCTACAGAATGCATGAATGTAGGAGAGGGGGCAGCCCTACACgctagagagaaagacacagcaAGATACACAAACTGTTTTTAAAAAGAGGACCATTTTACACTGAATGAATGACCATGTTTATCCAGAGGCCAACATATGACAGAAAGCCTTTGCGACTGCATGGGCCTCCATTCCCTGATGTTTCCAATGGAtttcctggataaataaaggtttgattaaaaaaaatatacaacagAAAGGAACATTTACAAGAATGATAATGCATTTATTTATAAAGTCAATATGACTCATTTCATTATCTATGTGCAGTTAACAGGAGAATATGTTTCAAAATGGCTGACACGGCAAGGGTTATGATATCTCCGTAGTGCCTTTTTCAAAAGCATATATGCAAGATGACAACAGGCTTTTTGTATATGCAAATGTGTTGTAGTTTTGATAAGGAATATGGGCAGCAATGCTGACTTTACAATTTCTCATATTTTCAATAAAGTTCCTCTCTAAA

Function

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K24190 LIM2; lens fiber membrane intrinsic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572953.2 True 1224 mRNA 0.46 5 58326130 58338076

Neighbor

gene id symbol gene type direction distance location
LOC110496595 LOC106588888 coding upstream 113572 58188792 ~ 58212558 (+)
LOC110496594 LOC106588886 coding upstream 138346 58182477 ~ 58187784 (+)
LOC110496868 LOC106588864 coding upstream 185511 58065484 ~ 58140619 (+)
LOC110496592 LOC106588883 coding upstream 390833 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 coding upstream 455769 57851179 ~ 57870361 (+)
LOC118941193 NA coding downstream 40619 58378682 ~ 58383251 (+)
LOC118941195 NA coding downstream 45239 58383315 ~ 58384050 (+)
LOC118941196 NA coding downstream 46027 58384103 ~ 58384651 (+)
LOC118941194 NA coding downstream 47220 58379624 ~ 58386065 (+)
LOC110496610 aunip coding downstream 399273 58737349 ~ 58739567 (+)
G1566416 NA non-coding upstream 17251 58307177 ~ 58308879 (+)
G1566362 NA non-coding upstream 158927 58166996 ~ 58167203 (+)
G1566361 NA non-coding upstream 160066 58165856 ~ 58166064 (+)
G1566354 NA non-coding upstream 175893 58150012 ~ 58150237 (+)
G1566352 NA non-coding upstream 179135 58146790 ~ 58146995 (+)
G1566439 NA non-coding downstream 4364 58342440 ~ 58342708 (+)
G1566440 NA non-coding downstream 5580 58343656 ~ 58343941 (+)
G1566443 NA non-coding downstream 11454 58349530 ~ 58352481 (+)
G1566457 NA non-coding downstream 40141 58378217 ~ 58379396 (+)
G1566224 tbc1d5 other upstream 379367 57941097 ~ 57946763 (+)
LOC110496571 hoxa7aa other upstream 1214167 57109128 ~ 57112335 (+)
G1565672 NA other upstream 1294167 57031621 ~ 57031963 (+)
G1566445 LOC106588893 other downstream 26180 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 532823 58864013 ~ 58873692 (+)
dlx5a dlx5 other downstream 619045 58957121 ~ 58959671 (+)
sem1 shfm1 other downstream 686904 59024919 ~ 59035388 (+)
G1567716 asb4 other downstream 971908 59309984 ~ 59312723 (+)

Expression


Co-expression Network