Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118941194 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 58379624 ~ 58386065 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037520.1 | False | 243 | mRNA | 0.42 | 4 | 58385296 | 58385964 |
| TU1792122 | True | 651 | lncRNA | 0.42 | 2 | 58379624 | 58386065 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118941196 | NA | coding | upstream | 645 | 58384103 ~ 58384651 (+) |
| LOC118941195 | NA | coding | upstream | 1246 | 58383315 ~ 58384050 (+) |
| LOC118941193 | NA | coding | upstream | 2045 | 58378682 ~ 58383251 (+) |
| LOC110496954 | LOC106588892 | coding | upstream | 47220 | 58326130 ~ 58338076 (+) |
| LOC110496595 | LOC106588888 | coding | upstream | 172738 | 58188792 ~ 58212558 (+) |
| LOC110496610 | aunip | coding | downstream | 351385 | 58737349 ~ 58739567 (+) |
| nanos2 | LOC106588910 | coding | downstream | 437238 | 58823202 ~ 58823929 (+) |
| LOC110496618 | LOC106588914 | coding | downstream | 478049 | 58864013 ~ 58873692 (+) |
| LOC110496619 | catsper4 | coding | downstream | 520541 | 58906505 ~ 58915399 (+) |
| chrc1 | chrc1 | coding | downstream | 532355 | 58918319 ~ 58922019 (+) |
| G1566457 | NA | non-coding | upstream | 5900 | 58378217 ~ 58379396 (+) |
| G1566443 | NA | non-coding | upstream | 32815 | 58349530 ~ 58352481 (+) |
| G1566440 | NA | non-coding | upstream | 41355 | 58343656 ~ 58343941 (+) |
| G1566439 | NA | non-coding | upstream | 42588 | 58342440 ~ 58342708 (+) |
| G1567094 | NA | non-coding | downstream | 51753 | 58437717 ~ 58438457 (+) |
| G1567095 | NA | non-coding | downstream | 55938 | 58441902 ~ 58445013 (+) |
| G1567083 | NA | non-coding | downstream | 80942 | 58466906 ~ 58467555 (+) |
| G1567160 | NA | non-coding | downstream | 160120 | 58546084 ~ 58549151 (+) |
| G1567178 | NA | non-coding | downstream | 191870 | 58577834 ~ 58578151 (+) |
| G1566445 | LOC106588893 | other | upstream | 8290 | 58364256 ~ 58377006 (+) |
| G1566224 | tbc1d5 | other | upstream | 438533 | 57941097 ~ 57946763 (+) |
| LOC110496592 | LOC106588883 | other | upstream | 464650 | 57893854 ~ 57935297 (+) |
| LOC110496591 | LOC106588881 | other | upstream | 522250 | 57851179 ~ 57870361 (+) |
| LOC110496571 | hoxa7aa | other | upstream | 1273333 | 57109128 ~ 57112335 (+) |
| dlx5a | dlx5 | other | downstream | 571157 | 58957121 ~ 58959671 (+) |
| sem1 | shfm1 | other | downstream | 639016 | 59024919 ~ 59035388 (+) |
| G1567716 | asb4 | other | downstream | 924020 | 59309984 ~ 59312723 (+) |
| G1567804 | col1a2 | other | downstream | 1115209 | 59501173 ~ 59585317 (+) |
| LOC110496594 | LOC106588886 | coding | upstream | 191840 | 58182477 ~ 58187784 (+) |
| LOC110496868 | LOC106588864 | coding | upstream | 239005 | 58065484 ~ 58140619 (+) |
| G1566416 | NA | non-coding | upstream | 70745 | 58307177 ~ 58308879 (+) |
