si:ch211-13c6.2 (LOC106588899)


Basic Information

Item Value
gene id si:ch211-13c6.2
gene name LOC106588899
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58629316 ~ 58640812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572594.2
CCAGATTAAACAGGAAGTGGGTTTCTAAAAGCCAGCAAGCCATTTTTCTCTTTTATTTGATCGAAAAATAACTAGCATCGTTTGCAAAAACGGTCTTATATTTATACTGTGTGAAGTACGGTTGTCTTTTAACCTCGTTTTCGCTAAATTAGCATTAGCTGGTTATTCACCCATCAGCTAACGTTCGTTTACTAACAACAGGGTATTTAGATCGGTTCAGCTAGCTAGGTAAGTGGCTACATTTCAAATTTCCGGGGCAACAATGGAAGGTTTAGAAACGACATACGAGGATTCTAATGCCGAGGACTACATTGATTGCGCTATCTGTACCAGATCCATTAGGGGTGAAACCCTGTATAAGATCCACCGGACTACAGTACTACACATGAGGAAAGAGGACCACCTGGTTTCTACTGGGCGGGCTACCAGGGATCATGAGTTACCAGATTTCACGGATATCAAACACTACCTCCAATACCTGAAACTTGATGAGCCAATCATCGGTTTGAGTCTTCTGGCGGAGGTGGAGCCAGTCTCCCATGACCGTCAGCCTGGCCCCAGATACATCTGCAGATTATGCGATCTGGAGGCATCCTTACCCAACATGGTCAATCATTTAATTGGTCGCAGACATCGACAGAATTACCTGGATATGAAAAGGAAAGACTTGGTGACATGGGACAGTACCAATGCCCTGGCTCAATCGGGGAAGGCTTTACGAGCCATGGCGGAGATTGTGGAAAGACAGAATGGGCAAGGAAGTCCAAAGCCTTTGAGGAAAAAACGAAATGTGGGCAAATTGAACAGTTCTAGAGTTCCCCCGAAAGAAAGAGGGGCCAAGAATCAGCCAAAACCAACACATTCTCATCCATCAGACATGAGGCGGGAAGGACACCTGCATCCAGGGAGGATGGATTTCCCGGACGGGGAGTACCACCACAGAGGAGGGCGTCCTGAAGATGATCTATATAGACCTCCCTTCCATGAAGACGATCCTTACTTATTGTCCGGGGCAGTGCGAGAGGTTTACCTGAGAGGAGGAGACCCCAGCCTCCGTGGTTTTGAGGAAGACGAGCTTCGTAGAGCAGGCTATCATGAAGATAACCGTCGTAGAAGGGATCACTACCTTGAAGAACAAATCCATGGTCAGGATTATTTGGAGGACATGCGTAGACGAGAGTTTTTGGAGTCCAGGCCAGGTCACCAAGAGGAAATCCCTCATCGCCAAGCATACCCTGAAGAACCTCCACGCAGGAGTGTCTACCCGGAGAATGATCCTCTCAAACAGTTCTATTCTGATGAGGTTCTCCGTAGAACATTTCATGCTGCTGAAGCTTCTAAGGAGCGGGCCTTTCGAGAAGATGAATCACCACATGGGAGGAGCTATCCTCATGTTCCGGCCTATCCGCAGGAATTTCCTCCTGAACGTGCCTATCCTGACAAAGCTCCTCTCTGCTTTGAACACGCCCATGGAAGGGCAGCCCACGGACCACCTGTTCATGAAGACCCTTACTCCGAGGATACCCGTAGAAGCGGATACCTTGAGGAGGCACAACGCAGGGCGTACAATGAGGAACAACATGGGCCAGCCTATCCAGAAGGCAACCCTCATAGGCGATCTCACGACAGGGATCCAAACGGCCGTGGCTACCCCAAGGGGCCAGAAGGGCAAGGAGCTGCTGATGAAGACTTGAGGTTCCCAAATCAAATGGAGGGACCAATGGAGACAGGGGGTCAAGGCAGCAGGGAGCATTTGTTTGACCTTGTCAAGGCCATTCGTCAGGAGGGGAGGGGTCCACAGCATCCAGAGATGGAGCGAGGGATGGGACCATCAGGAATGAGGGGGACTCCTCAGAAGCCAGCAGAGGGTGGCAGAATGAGAACAGAGATCCCCGAACCTTTCCGGCGCTTCCTGGAAGGAGCCACAGATGACCACAAGAGCCCCGGGAAACGGAAGAGAAAGAGCAGGTTCTCTGATGCCACAGAACAGGAGGAGGACGTGTTGAAGTTAATGCAAGCTGGTGACAATAGAAGAAGGTCAGAACCTTTTGCCAAGCCACAGGGTGCTTATCAAGGAGTAGCAGGCTCCAGACCAATGGCAGAGGCAACTCCAGACACTGGGAATGTTTTGGATGTACTGAATAACATACAGGTTGAGAATGTGGAAGAGGCCAACTTCCTGAAGGACAAGCTGTGTAACCTTCTGAAAGAGTTCCAAGACAAAAAATATGAGAAGACAGCGGTAATGCCTGCGTACAAAAGCCTACATCCAACAGTAATTTCCAAAGAATATAATCACATGAGCAAGGATCACCTGGAAAATCCCAGAGATGACTATGAAAGAAACTACAGAGAAGTGCAAGAGGAGAGACATTACGAAGGCCATCCTCCCAGACACTCAAAGGAACGCTCACAGGAGCGCTACACTCCAGAGACCCCACAGGATCCttacagagacacagacatgagaatggagaggagagctCAATATGAAGAGGTCTTTGGGCATGTTGAGATGTACCCACAATCTCATGCTCGTCCAGAGGAGCCAATGGCATACCCCCACGAGAGTTGTCAGGGGCAGATGTACCCTCGTGATTACCCACCTGCAGGGGATCTTCACCATCCATTCAATCCTACACCCCCAATACACTGGGAGCGGGGGTACAGGACGGGTGTCCCTCAATCCACCAGCCTAGACAAAATCACCTCCACTCTCCTGGAGCTTGTGGCAAGGAAAAAGTGATTTTACAGTAGAACCACCATGTGTGTAAAATATTTGTATTGATCTGAGCTCAACTGTATTTCTGTTGGAAGTTTgcttttgaaatgtttctacactTTTATTTGCTTTAATTGTTCATCTTGATGGCTAGATTTAAGGGTTAAAGGTTTTGTAGCAATTATTTGACATTAGTAATCCGAAAATATGCTTTGAACGGTGTAGACATGTTGTTGAAAACAAAATGATTTCTTTTGAATAACTTCTATTCACTTAACACTGCATTGTAACTGACAATACAACATGTGTGACCACAAATCAGTTCTGATCCAAACAAGATGGTTAAAGaaatattacactgaacaaaaatataagcgcaacatgtaaagtgttggtcccttgtttcatgagctgaaataaaatatcctagaaatgttccatacacaccaaAA
>XM_021572595.2
CCAGATTAAACAGGAAGTGGGTTTCTAAAAGCCAGCAAGCCATTTTTCTCTTTTATTTGATCGAAAAATAACTAGCATCGTTTGCAAAAACGGTCTTATATTTATACTGTGTGAAGTACGGTTGTCTTTTAACCTCGTTTTCGCTAAATTAGCATTAGCTGGTTATTCACCCATCAGCTAACGTTCGTTTACTAACAACAGGGTATTTAGATCGGTTCAGCTAGCTAGGTAAGTGGCTACATTTCAAATTTCCGGGGCAACAATGGAAGGTTTAGAAACGACATACGAGGATTCTAATGCCGAGGACTACATTGATTGCGCTATCTGTACCAGATCCATTAGGGGTGAAACCCTGTATAAGATCCACCGGACTACAGTACTACACATGAGGGGCGGGCTACCAGGGATCATGAGTTACCAGATTTCACGGATATCAAACACTACCTCCAATACCTGAAACTTGATGAGCCAATCATCGGTTTGAGTCTTCTGGCGGAGGTGGAGCCAGTCTCCCATGACCGTCAGCCTGGCCCCAGATACATCTGCAGATTATGCGATCTGGAGGCATCCTTACCCAACATGGTCAATCATTTAATTGGTCGCAGACATCGACAGAATTACCTGGATATGAAAAGGAAAGACTTGGTGACATGGGACAGTACCAATGCCCTGGCTCAATCGGGGAAGGCTTTACGAGCCATGGCGGAGATTGTGGAAAGACAGAATGGGCAAGGAAGTCCAAAGCCTTTGAGGAAAAAACGAAATGTGGGCAAATTGAACAGTTCTAGAGTTCCCCCGAAAGAAAGAGGGGCCAAGAATCAGCCAAAACCAACACATTCTCATCCATCAGACATGAGGCGGGAAGGACACCTGCATCCAGGGAGGATGGATTTCCCGGACGGGGAGTACCACCACAGAGGAGGGCGTCCTGAAGATGATCTATATAGACCTCCCTTCCATGAAGACGATCCTTACTTATTGTCCGGGGCAGTGCGAGAGGTTTACCTGAGAGGAGGAGACCCCAGCCTCCGTGGTTTTGAGGAAGACGAGCTTCGTAGAGCAGGCTATCATGAAGATAACCGTCGTAGAAGGGATCACTACCTTGAAGAACAAATCCATGGTCAGGATTATTTGGAGGACATGCGTAGACGAGAGTTTTTGGAGTCCAGGCCAGGTCACCAAGAGGAAATCCCTCATCGCCAAGCATACCCTGAAGAACCTCCACGCAGGAGTGTCTACCCGGAGAATGATCCTCTCAAACAGTTCTATTCTGATGAGGTTCTCCGTAGAACATTTCATGCTGCTGAAGCTTCTAAGGAGCGGGCCTTTCGAGAAGATGAATCACCACATGGGAGGAGCTATCCTCATGTTCCGGCCTATCCGCAGGAATTTCCTCCTGAACGTGCCTATCCTGACAAAGCTCCTCTCTGCTTTGAACACGCCCATGGAAGGGCAGCCCACGGACCACCTGTTCATGAAGACCCTTACTCCGAGGATACCCGTAGAAGCGGATACCTTGAGGAGGCACAACGCAGGGCGTACAATGAGGAACAACATGGGCCAGCCTATCCAGAAGGCAACCCTCATAGGCGATCTCACGACAGGGATCCAAACGGCCGTGGCTACCCCAAGGGGCCAGAAGGGCAAGGAGCTGCTGATGAAGACTTGAGGTTCCCAAATCAAATGGAGGGACCAATGGAGACAGGGGGTCAAGGCAGCAGGGAGCATTTGTTTGACCTTGTCAAGGCCATTCGTCAGGAGGGGAGGGGTCCACAGCATCCAGAGATGGAGCGAGGGATGGGACCATCAGGAATGAGGGGGACTCCTCAGAAGCCAGCAGAGGGTGGCAGAATGAGAACAGAGATCCCCGAACCTTTCCGGCGCTTCCTGGAAGGAGCCACAGATGACCACAAGAGCCCCGGGAAACGGAAGAGAAAGAGCAGGTTCTCTGATGCCACAGAACAGGAGGAGGACGTGTTGAAGTTAATGCAAGCTGGTGACAATAGAAGAAGGTCAGAACCTTTTGCCAAGCCACAGGGTGCTTATCAAGGAGTAGCAGGCTCCAGACCAATGGCAGAGGCAACTCCAGACACTGGGAATGTTTTGGATGTACTGAATAACATACAGGTTGAGAATGTGGAAGAGGCCAACTTCCTGAAGGACAAGCTGTGTAACCTTCTGAAAGAGTTCCAAGACAAAAAATATGAGAAGACAGCGGTAATGCCTGCGTACAAAAGCCTACATCCAACAGTAATTTCCAAAGAATATAATCACATGAGCAAGGATCACCTGGAAAATCCCAGAGATGACTATGAAAGAAACTACAGAGAAGTGCAAGAGGAGAGACATTACGAAGGCCATCCTCCCAGACACTCAAAGGAACGCTCACAGGAGCGCTACACTCCAGAGACCCCACAGGATCCttacagagacacagacatgagaatggagaggagagctCAATATGAAGAGGTCTTTGGGCATGTTGAGATGTACCCACAATCTCATGCTCGTCCAGAGGAGCCAATGGCATACCCCCACGAGAGTTGTCAGGGGCAGATGTACCCTCGTGATTACCCACCTGCAGGGGATCTTCACCATCCATTCAATCCTACACCCCCAATACACTGGGAGCGGGGGTACAGGACGGGTGTCCCTCAATCCACCAGCCTAGACAAAATCACCTCCACTCTCCTGGAGCTTGTGGCAAGGAAAAAGTGATTTTACAGTAGAACCACCATGTGTGTAAAATATTTGTATTGATCTGAGCTCAACTGTATTTCTGTTGGAAGTTTgcttttgaaatgtttctacactTTTATTTGCTTTAATTGTTCATCTTGATGGCTAGATTTAAGGGTTAAAGGTTTTGTAGCAATTATTTGACATTAGTAATCCGAAAATATGCTTTGAACGGTGTAGACATGTTGTTGAAAACAAAATGATTTCTTTTGAATAACTTCTATTCACTTAACACTGCATTGTAACTGACAATACAACATGTGTGACCACAAATCAGTTCTGATCCAAACAAGATGGTTAAAGaaatattacactgaacaaaaatataagcgcaacatgtaaagtgttggtcccttgtttcatgagctgaaataaaatatcctagaaatgttccatacacaccaaAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572594.2 False 3174 mRNA 0.47 13 58629316 58640812
XM_021572595.2 True 3149 mRNA 0.47 12 58629316 58640812

Neighbor

gene id symbol gene type direction distance location
LOC110496603 NA coding downstream 19639 58589095 ~ 58609677 (-)
LOC110496602 LOC106588895 coding downstream 56164 58443648 ~ 58573152 (-)
LOC110496601 LOC106588893 coding downstream 216381 58349527 ~ 58412935 (-)
LOC110496600 ubql4 coding downstream 309796 58307374 ~ 58319520 (-)
LOC110496599 LOC106588891 coding downstream 322816 58302827 ~ 58306500 (-)
LOC110496605 LOC106588900 coding upstream 221 58641033 ~ 58661466 (-)
LOC110496608 LOC106588904 coding upstream 35405 58676217 ~ 58708019 (-)
LOC110496607 LOC106588901 coding upstream 67434 58708246 ~ 58723758 (-)
LOC110496611 vps28 coding upstream 84651 58725463 ~ 58737268 (-)
LOC110496609 cap2 coding upstream 99527 58739765 ~ 58789014 (-)
G1567353 NA non-coding downstream 40334 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 45260 58583826 ~ 58584056 (-)
G1567348 NA non-coding downstream 51564 58577525 ~ 58577752 (-)
G1567334 NA non-coding downstream 73934 58553305 ~ 58555382 (-)
G1567326 NA non-coding downstream 92448 58533763 ~ 58536868 (-)
G1567368 NA non-coding upstream 21801 58662613 ~ 58662887 (-)
G1567380 NA non-coding upstream 53160 58693972 ~ 58694822 (-)
G1567865 NA non-coding upstream 181367 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 231044 58870937 ~ 58873691 (-)
G1567080 NA other downstream 218187 58410499 ~ 58411129 (-)
G1566972 NA other downstream 461619 58167384 ~ 58167697 (-)
G1566923 NA other downstream 551170 58074209 ~ 58078146 (-)
G1566899 NA other downstream 601526 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1891969 56728341 ~ 56737381 (-)
G1567875 NA other upstream 228551 58869363 ~ 58870007 (-)
G1567931 NA other upstream 364033 59004845 ~ 59074648 (-)
G1568017 NA other upstream 514216 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 1088367 59712624 ~ 59738593 (-)

Expression


Co-expression Network