LOC110496605 (LOC106588900)


Basic Information

Item Value
gene id LOC110496605
gene name LOC106588900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58641033 ~ 58661466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572597.2
GTGCACGGAAATAAAGAGGACAAAGTGACCCTGCCTCTGTCCGTACACTTGCAGGGCTGGATCTTTTTAAATACAGAAACAGGCGTGCACGGAAATAAAGAGGGTAAAGTGACCCTACCTCCGTCGGTACACACTTGCAGGGCTGCAGCGTTTGCACAAGCATATCGCGTGCTAGCCCAATTGCTAATTTAGCTAGCTGTAGGCCCTAGCTTGCATCCAATATCTGTTTTCCAGAAAGGCGTCGATATGTCAGCTTTTTCAGAGGCAGCGTTGGAGAAGAAACTATCGGAGCTTAGCAACTCCCAACAAAGTGTTCAGACACTGTCACTTTGGCTTATCCATCATAGAAAACACTCGAAGACCATCGTCAACGTTTGGTTCAACGAATTGAAAAAAGCCAAGGTATCCAGGAAGCTCACCTTCCTCTACCTTGCCAACGATGTTATTCAGAACAGCAAGAAGAAAGGACCCGAGTTCACCCAGGACTTTGCTCCTGTCATCGTTGATGCCTTCAAACACGTGTCCAGggatggagaggatggatgtAAGAAACAGCTGGGCCGGGTTCTGTCCATCTGGCAGGAGAGAGCGGTGTATGAGAACAACCTGCTGGACCAGCTCTCGCACGTTCTGCTGGGAGAGAAGGCCAAGAAGAGGCCGTATGAGGAGATTACACTGGACGACCAGGACCTGGCCTCCCGGAGCTCCCCAGCAGAGCCCCCACAGACGGCAGAGTTAATCCGGGCCCTGCAGGAACTGGAGAATTCCGCCACTGGGGACTCGGCGCTGTGTCAGCGGATCTCCTGCCTGCCGGCTGAGGTGCTGGACACGTCACTACTGCACAGGATCACAGaTAAAGAGCAGGGCGAGCGCCTGTCCAGGCTGGTGGAGGAGGCTTGCATGTTGCTGGCAGACTACAGCGGACGTTTGGCGGCAGAGGTAGATGACCGGCGGCAGCTCACACGCATGCTCACCCTGTTTCTACACAGCCAGAGGGATGGCCTGGCCCAGAACGAGCAGAAACTAGAAGAGTACAAGCGCAAGCTGGCACGGGTGACCCAGGTACGGAAGGAGCTGCGTACTCGTCTCAGCAATCTACCagacctctctctgctccccagTGTGACCAGTGGACATTTGCACCTGCCCTCATCTGGTGTCGAACTTTATGACCCCACAGCCTGACAGTTCACCTGTGCTTTTCACCCATGACTGACCACCCACCCTCTGATTGACATCTCTCACCATATCGTTTAACATCTGGACTTCACTTAGTGGACATCAGAGTCACTTAGTAACCTTTGATTGACCCATCTCCCAACCTAACATTGACCATGTCCATCTTGCCATTGCGCTACTTACTGTTTGACCTAGGCTCTCTCCTATCTTTCCCCATGTAGTCATGTTTATCATTGCTCCCTGATCGACACTGTCCATGCCTCTCTTACCAGTCATCATGTAACCCTCCCTCCTATTTGCCAATAATCTCTCATCTTTTCACAACGATAGATCATTCGtctgatatataatatatatatagaattGATATATCCTATGCTTTCACATCTATTGCTATTTATTGAAAAGCATGACCCAGGTTTTCCATCCATAATgaactctctttcttcccctaTTCTGTTCTTCCTCTGAATACATGGATACAGTGATTCCCTCTTGGCTTTTACCGACAGTCTTCCCATGATATTCCTTTTCTGTTTTCGCCTCTCTACCTAACCCCAACCTCCCGAAAATGGTCAGGAAGATATTGTTGTGATATTATTTTTGTATCGACAGGTATAGTGAATTTAGATAGCACCAGAAATTGTATACTGAAGTAGTCCCAATGAATACATCCCCTCTGTATGGTATCATTATAATCAGCTGCAGTATTTTATTACAAATGATTATCTTTGTGTTCTTTTATAACTGTTCTAAAGTATTCCCATTATGCGGACACAGCTCATGGGTTTTAGATCTTGCTCTTGGGTGCTTCACTAATAGCAGGGATTGTTGCTGTTTAAGTTCTATATCAATGGCCTTAAAATAGTTAAGCATGTTCAGAGAAGTTCTCTTGCCCAGATTTATTTGCAAAATGAAATAGTTGGGAAATGTTAGGTTACTGTTAAAAGTAACAGGTTTGAATATGTTTCACTTGTTTTGCGAAAAGCTTTTGAGAAAACAGAAACATTCATTGTGAACATTGTTCTTGAAGCGGATAACCAATTGATTTATTTTTACCACATAGACAAAGTTGCATGTAAATACTAGGAACCAATTGGTTTTATCTTGTATTGTCGTTATGGGCTCTCCAAGACCTGCTAGTCATTCCAAAAAATCCTTGAGTCTCATTGCAGATGCAGCTTTATAGAAGTTGAAGGTCTCCATAATAGTTGAAGCCTTTCCCATTTTGGAACAAGTGAGTTGAGACATCAGTGTTGTGTGCTTGTTTACTGTATTATTTACTGCCCCTTGGCTTTAACCTCTAGTGAATGTTGTTCAGCCACCTATGACAGCTATGCTCTTTAAAGAACTTGAAGGGGCCCACTGTTTGCAAAACCATACCTTATAACTTACTTGACTGATTTGAAAGTGTTCATTGAAACACATTGTTGTAACGCGTTCAGTTCTCAGAACCAAATAAACAGCAAAACAGAGGATAATCTA
>XM_021572596.2
ACGGAAATAAAGAGGACAAAGTGACCCTGCCTCTGTCCGTACACTTGCAGGGCTGGATCTTTTTAAATACAGAAACAGGCGTGCACGGAAATAAAGAGGGTAAAGTGACCCTACCTCCGTCGGTACACACTTGCAGGGCTGCAGCGTTTGCACAAGCATATCGCGTGCTAGCCCAATTGCTAATTTAGCTAGCTGTAGGCCCTAGCTTGCATCCAATATCTGTTTTCCAGAAAGGCGTCGATATGTCAGCTTTTTCAGAGGCAGCGTTGGAGAAGAAACTATCGGAGCTTAGCAACTCCCAACAAAGTGTTCAGACACTGTCACTTTGGCTTATCCATCATAGAAAACACTCGAAGACCATCGTCAACGTTTGGTTCAACGAATTGAAAAAAGCCAAGGTATCCAGGAAGCTCACCTTCCTCTACCTTGCCAACGATGTTATTCAGAACAGCAAGAAGAAAGGACCCGAGTTCACCCAGGACTTTGCTCCTGTCATCGTTGATGCCTTCAAACACGTGTCCAGggatggagaggatggatgtAAGAAACAGCTGGGCCGGGTTCTGTCCATCTGGCAGGAGAGAGCGGTGTATGAGAACAACCTGCTGGACCAGCTCTCGCACGTTCTGCTGGGAGAGAAGGCCAAGAAGAGGCCGTATGAGGAGATTACACTGGACGACCAGGACCTGGCCTCCCGGAGCTCCCCAGCAGAGCCCCCACAGACGGCAGAGTTAATCCGGGCCCTGCAGGAACTGGAGAATTCCGCCACTGGGGACTCGGCGCTGTGTCAGCGGATCTCCTGCCTGCCGGCTGAGGTGCTGGACACGTCACTACTGCACAGGATCACAGaTAAAGAGCAGGGCGAGCGCCTGTCCAGGCTGGTGGAGGAGGCTTGCATGTTGCTGGCAGACTACAGCGGACGTTTGGCGGCAGAGGTAGATGACCGGCGGCAGCTCACACGCATGCTCACCCTGTTTCTACACAGCCAGAGGGATGGCCTGGCCCAGAACGAGCAGAAACTAGAAGTGCGTAAATCATCACCTTTTATTTTTTCActacactcttgtcattctccagcttcattctgtctctctcacatgtTCTGTTTTTGTAGCAGGCTTTTTCCTCTGTGTCCTGTATCCCCTCAGCCTTTTGAATGTCTCCAATTGAATAGACTGTGGACTACTCACATTTTGCCACAAGCAACACTTCTGAAGTAAAATGATCTGTCCCTTATGGAGTAAAACTTTAATGGgacaaatatttttatttggcCATGTCCAAACTTGAGATGCACGCTTAACTGGAACTGTCATGCTAATCCTGAATTGATGTCAGTGGGAGATTTGCACAACAGTTTGAGTTAGATGTTTACCTCAAGTTACGATTCAAGTCATTATGCCTCTCTCCACTTTCCAGTGATGTCATCCACATGATTAGTACAGGCCCACAATGCTTTAGCGAAGATGACATCTCTCACCCCATTACTTGCAGAACTACAATCTATTGCCATTGGTTTCTAATACACAGTGGAtgtaaaatgtgtgtttttgcaATTGCTGAATGCATAACTGTCCAGCCTTTACCCACAGGAAGTCGGCAAGATCAAGTATTCTGGTCAATGTATCTGCAGTTCAACAAATCTCTTGtaataaagaaaaaaaaagagaataaAAA
>XM_036953376.1
GCACGGAAATAAAGAGGACAAAGTGACCCTGCCTCTGTCCGTACACTTGCAGGGCTGGATCTTTTTAAATACAGAAACAGGCGTGCACGGAAATAAAGAGGGTAAAGTGACCCTACCTCCGTCGGTACACACTTGCAGGGCTGCAGCGTTTGCACAAGCATATCGCGTGCTAGCCCAATTGCTAATTTAGCTAGCTGTAGGCCCTAGCTTGCATCCAATATCTGTTTTCCAGAAAGGCGTCGATATGTCAGCTTTTTCAGAGGCAGCGTTGGAGAAGAAACTATCGGAGCTTAGCAACTCCCAACAAAGTGTTCAGACACTGTCACTTTGGCTTATCCATCATAGAAAACACTCGAAGACCATCGTCAACGTTTGGTTCAACGAATTGAAAAAAGCCAAGGTATCCAGGAAGCTCACCTTCCTCTACCTTGCCAACGATGTTATTCAGAACAGCAAGAAGAAAGGACCCGAGTTCACCCAGGACTTTGCTCCTGTCATCGTTGATGCCTTCAAACACGTGTCCAGggatggagaggatggatgtAAGAAACAGCTGGGCCGGGTTCTGTCCATCTGGCAGGAGAGAGCGGTGTATGAGAACAACCTGCTGGACCAGCTCTCGCACGTTCTGCTGGGAGAGAAGGCCAAGAAGAGGCCGTATGAGGAGATTACACTGGACGACCAGGACCTGGCCTCCCGGAGCTCCCCAGCAGAGCCCCCACAGACGGCAGAGTTAATCCGGGCCCTGCAGGAACTGGAGAATTCCGCCACTGGGGACTCGGCGCTGTGTCAGCGGATCTCCTGCCTGCCGGCTGAGGTGCTGGACACGTCACTACTGCACAGGATCACAGaTAAAGAGCAGGGCGAGCGCCTGTCCAGGCTGGTGGAGGAGGCTTGCATGTTGCTGGCAGACTACAGCGGACGTTTGGCGGCAGAGGTAGATGACCGGCGGCAGCTCACACGCATGCTCACCCTGTTTCTACACAGCCAGAGGGATGGCCTGGCCCAGAACGAGCAGAAACTAGAAGAAGTCGGCAAGATCAAGTATTCTGGTCAATGTATCTGCAGTTCAACAAATCTCTTGtaataaagaaaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572597.2 False 2664 mRNA 0.45 7 58641033 58661466
XM_021572596.2 False 1677 mRNA 0.48 6 58644302 58661462
XM_036953376.1 True 1101 mRNA 0.52 7 58644313 58661464

Neighbor

gene id symbol gene type direction distance location
si:ch211-13c6.2 LOC106588899 coding downstream 221 58629316 ~ 58640812 (-)
LOC110496603 NA coding downstream 31356 58589095 ~ 58609677 (-)
LOC110496602 LOC106588895 coding downstream 67881 58443648 ~ 58573152 (-)
LOC110496601 LOC106588893 coding downstream 228098 58349527 ~ 58412935 (-)
LOC110496600 ubql4 coding downstream 321513 58307374 ~ 58319520 (-)
LOC110496608 LOC106588904 coding upstream 14751 58676217 ~ 58708019 (-)
LOC110496607 LOC106588901 coding upstream 46780 58708246 ~ 58723758 (-)
LOC110496611 vps28 coding upstream 63997 58725463 ~ 58737268 (-)
LOC110496609 cap2 coding upstream 78873 58739765 ~ 58789014 (-)
rbm24a LOC106588906 coding upstream 131833 58793299 ~ 58808572 (-)
G1567353 NA non-coding downstream 52051 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 56977 58583826 ~ 58584056 (-)
G1567348 NA non-coding downstream 63281 58577525 ~ 58577752 (-)
G1567334 NA non-coding downstream 85651 58553305 ~ 58555382 (-)
G1567326 NA non-coding downstream 104165 58533763 ~ 58536868 (-)
G1567368 NA non-coding upstream 1147 58662613 ~ 58662887 (-)
G1567380 NA non-coding upstream 32506 58693972 ~ 58694822 (-)
G1567865 NA non-coding upstream 160713 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 210390 58870937 ~ 58873691 (-)
G1567080 NA other downstream 229904 58410499 ~ 58411129 (-)
G1566972 NA other downstream 473336 58167384 ~ 58167697 (-)
G1566923 NA other downstream 562887 58074209 ~ 58078146 (-)
G1566899 NA other downstream 613243 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1903686 56728341 ~ 56737381 (-)
G1567875 NA other upstream 207897 58869363 ~ 58870007 (-)
G1567931 NA other upstream 343379 59004845 ~ 59074648 (-)
G1568017 NA other upstream 493562 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 1067713 59712624 ~ 59738593 (-)

Expression


Co-expression Network