LOC110496608 (LOC106588904)


Basic Information

Item Value
gene id LOC110496608
gene name LOC106588904
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58676217 ~ 58708019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953374.1
AGCTAACTTGTAGCAGCCAGGCCAACAGTGAGCAAAACAAACCATGTCTCAGGACAAGAACATCTACCCCGGGTTGATGGGGGAGAACAACCCCCTCCACAACAATGTCTACGGACCGCCCCAGCCCGGGTTTGGGATACCCCCTCCCAACTACACCCAGGCCTCAGTGCAAGCTCCATACCCCGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGATCAACCTGCACCCTATGGTCAGCCCGGGTTCCCTCAGGGAGGCCCTGGATTTGGACAGGGACCGTACCCTCAGATGCCTTCTCCCCAGGCCCCGTACCCCGCGGGGCCTTACCAGCAACCTGCACAGCCAGGGTTCCCTGGTGACCCTAACGCTTCCATGGGTGACGGTTACCATGGTGATGTGCCACCATCTTACTACGACAATGAGGAGTTCACCAACTCTGGCTTTGAGGACAAGAGCATTCGACAGGCCTTCATTAGAAagGTGTTCCTGGTGCTGACCGTTCAGCTGATGGTCACCTTCTCCTTCGTGGCCGTCTTCACCTTTGTGGACGATGCCAAGTTGTTTGTGCGTCGTAACCCCTGGACATACTACGTGTCCTACGCCATCTTCTTCGTGTCTCTCATCACCCTCAGCTGCTGTGGAGAGTTCCGCCGCAAACACCCCTGGAACCTGGTGGCATTGtCCATCCTGACCCTGAGTCTTTCCTACATGGTGGGGATGATCGCCAGCTTCTATGACACAGAGACGGTCATCATGGCCGTAGGCATTACCGCTGTGGTCTGCTTCACCGTGGTCCTCTTCTCactacagAGCAAGTATGACTTCACTTCTTGCCGGGGTGTTCTGTTCGTGTGTCTGATCGTCCTGCTGCTCTTCTCTATCCTCTGCATCTTCATCCGCCACAGGATCCTCCACATCGTCTACGCCTCCCTGGGAGCCCTGCTCTTTACCTGTTTCTTGGCTGTGGACACCCAGCTCCTCCTGGGCAACAAGaagctggctctgagtccagagGAGTACATCTTTGCCGCTCTCAACCTCTACACCGACATCATCAACATTTTCCTCTACATCCTGGCTATCGTAGGCCGTTCCCGCGAGTGATGGAGTGGCCCCCttaggggaaagggagaggaaggcATCCAGGAACCTCTCCTCAGTGTGGAAGAATGAATGATGCTCTTTCCCCTCGCTGTCTTTGTATGATTTGTTCCCGCTCTCATTCCTCTGTTACACCTCCCCCACCTTCACCCCACACCCTTCAGGAGACGAATTGGGTGACAGAAAATATGTTCTGTCACCTTTAGCAGTAGCGGATTAAACTCGTTTGAGTGTAAATCTGAATTTAGTTTAGTCTGCTACTTTAGCAGCAGGTCTGTCATAGAGTGCCGCAAAGGGCatattttttcatttatttatgtgAAATTCCTTTGAAGTATGTTACTACAGTGACAGAAGTTACACCTTAACATtccttgttttgtttttaatgCCTTCTGCTTGCTCTGTCATCCTTGGCAATCTGCTTCTACTTACACAGATGGTAGCTAGCTAGTACAGCACTTCTTAACATTAGCTGAACAAACACTATGGAACTCTCCTTGGCGCTCTGCCTTGCCTTGTAGGTTAAGTGctgtagagagattgagagggaagAGAGTTATGCTATCTAATTGAGAGCAGTGCTGTGATGGAGGCAAGCGCTTTATAAGGAAAAAAACGTTCTAGAAACACCTTTCCTGCTATATATCCTCTCCCTCTGGTGTTCCCTCCTTTTCCTGCCAATGTAAATGAACTCTGCATGGCACCTGAAACACACCTGAGATGAGCTGAATAGATGAATAAAAACCATCCAGAGGGATGATACCTCTCCTGGCCTTCTTGTTACGTAGCTGTACATAGATCTATGGGAACTGTATATGACACTTAGTTCCCTAACTAGCTCTTTCTAGGCATGCCCGGGGAGTGTGTGGCTGTGATGCTTGAAGGGAGAACAATATGCTCactcaatgtacagtatatgactAATGACATCACTACGCATAGCTAACCAGTACAAAGACCAAAACTTGAATAAAATGTGACTGACGTTATTTTTGTTAACATGGGATGTGTGACTTATACACTAATACACATGAATATATTTATGGAATCCCTGATTTCCCCCCCACACTAAGCTAAGTGTGGAATGTACCATctgcttttttaaaaatgtattttcccccTCGTATTTTCCCTTTTTCTTACTAATTCCTAATTTGTCTCCTTGTCTTTATGTATAGTAAATACTATAgtgttgatttttttttctctccattatTACTAATGTGAAATGTTGAAGTATTGGAATTTCTGAACACTTTTATACAGATGTTACAAAAATATCACTAGTTGCTTGTGATTTTAAAAACCTGACATGCTGTAGTAGATTGATGGACACGGAGATTGAAGGACATAAGTTATTAATGATCTATTTATTGAAGTTGCTGTAGAAGGCAAGGCTGCTGTGAAGTTGAAAGTGAATGAGAAGGATACTCAACACTACATTTTCTGCCGTTCTGGATGCATGGTGAAATGTCCTCCTAGGAGAGGGAAGTTTATTATTCACCAtttacgtcccaaatggaaccctgtttcctACTTAGTGTGCTACTTTCCTACTTAGttctctggtcaaaaggagtgcttTAAAATGGAAATCAGGTGGGCTTTGAGATGCAGAGTGATGTATATTCTGAGGTTTCCTGCTCAAACGTGAAGGATTAAATTAAATACTTGAAGACTCAAATGTAGAATAAGGAAAGGCTGAAAACAGACAGAATCACTAACACTAGTCACTAGAGAGAACATTCTTAGTTTTAACACCCCACTACTACCAATGCTGACCAAGCCATTGAGATGTTCTCCATTGAAACAAAACACAAGACAGTTAAGTTACATCTACTAACATGAATACCATTTTGAAAACCACATCAAAGCTTTGAAACTCTGAGTTCAGTTATGTTTTGACTCCTGTTGCACGACCCTTTCCCGTTGTTGCATGTGTTGGGATTGCACACTGGGCAGTGCACTAGCTGTTTCTTTGAGACATGTGGAATGAAGAGTAATCATAATGATATAATGATAGTGTTATTGTGCTGCCTAGAGCcctgttttaaccatgttgattTAACTTGTTTTTACctaactaatatatatatatatatatatatatatatacacacacacacaactccttaGTGGTTTGATGTGTTGAGTAATTTTGGGCTTTGTAGTTCTGTTTGCACTGTAAATTCGCATTAAAATTGAACTGGAATTGCA
>XM_036953373.1
CTGGACGTTTCACATCGGAGGAGGCAGCAGGGTTTCGAAAGCGAAACATCAATTCAACGGGAATTGGCGTTGAATAATATATCAACGTTAACTACACTGTTTTGCTTGGTTAAAGGTACACGTACTAAAAAGGCCAACAGTGAGCAAAACAAACCATGTCTCAGGACAAGAACATCTACCCCGGGTTGATGGGGGAGAACAACCCCCTCCACAACAATGTCTACGGACCGCCCCAGCCCGGGTTTGGGATACCCCCTCCCAACTACACCCAGGCCTCAGTGCAAGCTCCATACCCCGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGATCAACCTGCACCCTATGGTCAGCCCGGGTTCCCTCAGGGAGGCCCTGGATTTGGACAGGGACCGTACCCTCAGATGCCTTCTCCCCAGGCCCCGTACCCCGCGGGGCCTTACCAGCAACCTGCACAGCCAGGGTTCCCTGGTGACCCTAACGCTTCCATGGGTGACGGTTACCATGGTGATGTGCCACCATCTTACTACGACAATGAGGAGTTCACCAACTCTGGCTTTGAGGACAAGAGCATTCGACAGGCCTTCATTAGAAagGTGTTCCTGGTGCTGACCGTTCAGCTGATGGTCACCTTCTCCTTCGTGGCCGTCTTCACCTTTGTGGACGATGCCAAGTTGTTTGTGCGTCGTAACCCCTGGACATACTACGTGTCCTACGCCATCTTCTTCGTGTCTCTCATCACCCTCAGCTGCTGTGGAGAGTTCCGCCGCAAACACCCCTGGAACCTGGTGGCATTGtCCATCCTGACCCTGAGTCTTTCCTACATGGTGGGGATGATCGCCAGCTTCTATGACACAGAGACGGTCATCATGGCCGTAGGCATTACCGCTGTGGTCTGCTTCACCGTGGTCCTCTTCTCactacagAGCAAGTATGACTTCACTTCTTGCCGGGGTGTTCTGTTCGTGTGTCTGATCGTCCTGCTGCTCTTCTCTATCCTCTGCATCTTCATCCGCCACAGGATCCTCCACATCGTCTACGCCTCCCTGGGAGCCCTGCTCTTTACCTGTTTCTTGGCTGTGGACACCCAGCTCCTCCTGGGCAACAAGaagctggctctgagtccagagGAGTACATCTTTGCCGCTCTCAACCTCTACACCGACATCATCAACATTTTCCTCTACATCCTGGCTATCGTAGGCCGTTCCCGCGAGTGATGGAGTGGCCCCCttaggggaaagggagaggaaggcATCCAGGAACCTCTCCTCAGTGTGGAAGAATGAATGATGCTCTTTCCCCTCGCTGTCTTTGTATGATTTGTTCCCGCTCTCATTCCTCTGTTACACCTCCCCCACCTTCACCCCACACCCTTCAGGAGACGAATTGGGTGACAGAAAATATGTTCTGTCACCTTTAGCAGTAGCGGATTAAACTCGTTTGAGTGTAAATCTGAATTTAGTTTAGTCTGCTACTTTAGCAGCAGGTCTGTCATAGAGTGCCGCAAAGGGCatattttttcatttatttatgtgAAATTCCTTTGAAGTATGTTACTACAGTGACAGAAGTTACACCTTAACATtccttgttttgtttttaatgCCTTCTGCTTGCTCTGTCATCCTTGGCAATCTGCTTCTACTTACACAGATGGTAGCTAGCTAGTACAGCACTTCTTAACATTAGCTGAACAAACACTATGGAACTCTCCTTGGCGCTCTGCCTTGCCTTGTAGGTTAAGTGctgtagagagattgagagggaagAGAGTTATGCTATCTAATTGAGAGCAGTGCTGTGATGGAGGCAAGCGCTTTATAAGGAAAAAAACGTTCTAGAAACACCTTTCCTGCTATATATCCTCTCCCTCTGGTGTTCCCTCCTTTTCCTGCCAATGTAAATGAACTCTGCATGGCACCTGAAACACACCTGAGATGAGCTGAATAGATGAATAAAAACCATCCAGAGGGATGATACCTCTCCTGGCCTTCTTGTTACGTAGCTGTACATAGATCTATGGGAACTGTATATGACACTTAGTTCCCTAACTAGCTCTTTCTAGGCATGCCCGGGGAGTGTGTGGCTGTGATGCTTGAAGGGAGAACAATATGCTCactcaatgtacagtatatgactAATGACATCACTACGCATAGCTAACCAGTACAAAGACCAAAACTTGAATAAAATGTGACTGACGTTATTTTTGTTAACATGGGATGTGTGACTTATACACTAATACACATGAATATATTTATGGAATCCCTGATTTCCCCCCCACACTAAGCTAAGTGTGGAATGTACCATctgcttttttaaaaatgtattttcccccTCGTATTTTCCCTTTTTCTTACTAATTCCTAATTTGTCTCCTTGTCTTTATGTATAGTAAATACTATAgtgttgatttttttttctctccattatTACTAATGTGAAATGTTGAAGTATTGGAATTTCTGAACACTTTTATACAGATGTTACAAAAATATCACTAGTTGCTTGTGATTTTAAAAACCTGACATGCTGTAGTAGATTGATGGACACGGAGATTGAAGGACATAAGTTATTAATGATCTATTTATTGAAGTTGCTGTAGAAGGCAAGGCTGCTGTGAAGTTGAAAGTGAATGAGAAGGATACTCAACACTACATTTTCTGCCGTTCTGGATGCATGGTGAAATGTCCTCCTAGGAGAGGGAAGTTTATTATTCACCAtttacgtcccaaatggaaccctgtttcctACTTAGTGTGCTACTTTCCTACTTAGttctctggtcaaaaggagtgcttTAAAATGGAAATCAGGTGGGCTTTGAGATGCAGAGTGATGTATATTCTGAGGTTTCCTGCTCAAACGTGAAGGATTAAATTAAATACTTGAAGACTCAAATGTAGAATAAGGAAAGGCTGAAAACAGACAGAATCACTAACACTAGTCACTAGAGAGAACATTCTTAGTTTTAACACCCCACTACTACCAATGCTGACCAAGCCATTGAGATGTTCTCCATTGAAACAAAACACAAGACAGTTAAGTTACATCTACTAACATGAATACCATTTTGAAAACCACATCAAAGCTTTGAAACTCTGAGTTCAGTTATGTTTTGACTCCTGTTGCACGACCCTTTCCCGTTGTTGCATGTGTTGGGATTGCACACTGGGCAGTGCACTAGCTGTTTCTTTGAGACATGTGGAATGAAGAGTAATCATAATGATATAATGATAGTGTTATTGTGCTGCCTAGAGCcctgttttaaccatgttgattTAACTTGTTTTTACctaactaatatatatatatatatatatatatatatacacacacacacaactccttaGTGGTTTGATGTGTTGAGTAATTTTGGGCTTTGTAGTTCTGTTTGCACTGTAAATTCGCATTAAAATTGAACTGGAATT
>XM_036953372.1
CGCCAGTCACTGTAGTTTTCGCAATTGCGTGAAAAGCTGCTCAGAATCTTACTAACTGGACGTTTCACATCGGAGGAGGCAGCAGGGTTTCGAAAGCGAAACATCAATTCAACGGGAATTGGCGTTGAATAATATATCAACGTTAACTACACTGTTTTGCTTGGTTAAAGGTACACGTACTAAAAAAGGCCAACAGTGAGCAAAACAAACCATGTCTCAGGACAAGAACATCTACCCCGGGTTGATGGGGGAGAACAACCCCCTCCACAACAATGTCTACGGACCGCCCCAGCCCGGGTTTGGGATACCCCCTCCCAACTACACCCAGGCCTCAGTGCAAGCTCCATACCCCGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGGCCAGCCTGCACCCTACGATCAACCTGCACCCTATGGTCAGCCCGGGTTCCCTCAGGGAGGCCCTGGATTTGGACAGGGACCGTACCCTCAGATGCCTTCTCCCCAGGCCCCGTACCCCGCGGGGCCTTACCAGCAACCTGCACAGCCAGGGTTCCCTGGTGACCCTAACGCTTCCATGGGTGACGGTTACCATGGTGATGTGCCACCATCTTACTACGACAATGAGGAGTTCACCAACTCTGGCTTTGAGGACAAGAGCATTCGACAGGCCTTCATTAGAAagGTGTTCCTGGTGCTGACCGTTCAGCTGATGGTCACCTTCTCCTTCGTGGCCGTCTTCACCTTTGTGGACGATGCCAAGTTGTTTGTGCGTCGTAACCCCTGGACATACTACGTGTCCTACGCCATCTTCTTCGTGTCTCTCATCACCCTCAGCTGCTGTGGAGAGTTCCGCCGCAAACACCCCTGGAACCTGGTGGCATTGtCCATCCTGACCCTGAGTCTTTCCTACATGGTGGGGATGATCGCCAGCTTCTATGACACAGAGACGGTCATCATGGCCGTAGGCATTACCGCTGTGGTCTGCTTCACCGTGGTCCTCTTCTCactacagAGCAAGTATGACTTCACTTCTTGCCGGGGTGTTCTGTTCGTGTGTCTGATCGTCCTGCTGCTCTTCTCTATCCTCTGCATCTTCATCCGCCACAGGATCCTCCACATCGTCTACGCCTCCCTGGGAGCCCTGCTCTTTACCTGTTTCTTGGCTGTGGACACCCAGCTCCTCCTGGGCAACAAGaagctggctctgagtccagagGAGTACATCTTTGCCGCTCTCAACCTCTACACCGACATCATCAACATTTTCCTCTACATCCTGGCTATCGTAGGCCGTTCCCGCGAGTGATGGAGTGGCCCCCttaggggaaagggagaggaaggcATCCAGGAACCTCTCCTCAGTGTGGAAGAATGAATGATGCTCTTTCCCCTCGCTGTCTTTGTATGATTTGTTCCCGCTCTCATTCCTCTGTTACACCTCCCCCACCTTCACCCCACACCCTTCAGGAGACGAATTGGGTGACAGAAAATATGTTCTGTCACCTTTAGCAGTAGCGGATTAAACTCGTTTGAGTGTAAATCTGAATTTAGTTTAGTCTGCTACTTTAGCAGCAGGTCTGTCATAGAGTGCCGCAAAGGGCatattttttcatttatttatgtgAAATTCCTTTGAAGTATGTTACTACAGTGACAGAAGTTACACCTTAACATtccttgttttgtttttaatgCCTTCTGCTTGCTCTGTCATCCTTGGCAATCTGCTTCTACTTACACAGATGGTAGCTAGCTAGTACAGCACTTCTTAACATTAGCTGAACAAACACTATGGAACTCTCCTTGGCGCTCTGCCTTGCCTTGTAGGTTAAGTGctgtagagagattgagagggaagAGAGTTATGCTATCTAATTGAGAGCAGTGCTGTGATGGAGGCAAGCGCTTTATAAGGAAAAAAACGTTCTAGAAACACCTTTCCTGCTATATATCCTCTCCCTCTGGTGTTCCCTCCTTTTCCTGCCAATGTAAATGAACTCTGCATGGCACCTGAAACACACCTGAGATGAGCTGAATAGATGAATAAAAACCATCCAGAGGGATGATACCTCTCCTGGCCTTCTTGTTACGTAGCTGTACATAGATCTATGGGAACTGTATATGACACTTAGTTCCCTAACTAGCTCTTTCTAGGCATGCCCGGGGAGTGTGTGGCTGTGATGCTTGAAGGGAGAACAATATGCTCactcaatgtacagtatatgactAATGACATCACTACGCATAGCTAACCAGTACAAAGACCAAAACTTGAATAAAATGTGACTGACGTTATTTTTGTTAACATGGGATGTGTGACTTATACACTAATACACATGAATATATTTATGGAATCCCTGATTTCCCCCCCACACTAAGCTAAGTGTGGAATGTACCATctgcttttttaaaaatgtattttcccccTCGTATTTTCCCTTTTTCTTACTAATTCCTAATTTGTCTCCTTGTCTTTATGTATAGTAAATACTATAgtgttgatttttttttctctccattatTACTAATGTGAAATGTTGAAGTATTGGAATTTCTGAACACTTTTATACAGATGTTACAAAAATATCACTAGTTGCTTGTGATTTTAAAAACCTGACATGCTGTAGTAGATTGATGGACACGGAGATTGAAGGACATAAGTTATTAATGATCTATTTATTGAAGTTGCTGTAGAAGGCAAGGCTGCTGTGAAGTTGAAAGTGAATGAGAAGGATACTCAACACTACATTTTCTGCCGTTCTGGATGCATGGTGAAATGTCCTCCTAGGAGAGGGAAGTTTATTATTCACCAtttacgtcccaaatggaaccctgtttcctACTTAGTGTGCTACTTTCCTACTTAGttctctggtcaaaaggagtgcttTAAAATGGAAATCAGGTGGGCTTTGAGATGCAGAGTGATGTATATTCTGAGGTTTCCTGCTCAAACGTGAAGGATTAAATTAAATACTTGAAGACTCAAATGTAGAATAAGGAAAGGCTGAAAACAGACAGAATCACTAACACTAGTCACTAGAGAGAACATTCTTAGTTTTAACACCCCACTACTACCAATGCTGACCAAGCCATTGAGATGTTCTCCATTGAAACAAAACACAAGACAGTTAAGTTACATCTACTAACATGAATACCATTTTGAAAACCACATCAAAGCTTTGAAACTCTGAGTTCAGTTATGTTTTGACTCCTGTTGCACGACCCTTTCCCGTTGTTGCATGTGTTGGGATTGCACACTGGGCAGTGCACTAGCTGTTTCTTTGAGACATGTGGAATGAAGAGTAATCATAATGATATAATGATAGTGTTATTGTGCTGCCTAGAGCcctgttttaaccatgttgattTAACTTGTTTTTACctaactaatatatatatatatatatatatatatatacacacacacacaactccttaGTGGTTTGATGTGTTGAGTAATTTTGGGCTTTGTAGTTCTGTTTGCACTGTAAATTCGCATTAAAATTGAACTGGAATT

Function

NR:

description
PREDICTED: protein lifeguard 1-like isoform X3

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953374.1 False 3382 mRNA 0.45 7 58676217 58691146
XM_036953373.1 False 3491 mRNA 0.45 7 58676220 58707964
XM_036953372.1 True 3547 mRNA 0.45 7 58676220 58708019

Neighbor

gene id symbol gene type direction distance location
LOC110496605 LOC106588900 coding downstream 14751 58641033 ~ 58661466 (-)
si:ch211-13c6.2 LOC106588899 coding downstream 35405 58629316 ~ 58640812 (-)
LOC110496603 NA coding downstream 66540 58589095 ~ 58609677 (-)
LOC110496602 LOC106588895 coding downstream 103065 58443648 ~ 58573152 (-)
LOC110496601 LOC106588893 coding downstream 263282 58349527 ~ 58412935 (-)
LOC110496607 LOC106588901 coding upstream 227 58708246 ~ 58723758 (-)
LOC110496611 vps28 coding upstream 17444 58725463 ~ 58737268 (-)
LOC110496609 cap2 coding upstream 32320 58739765 ~ 58789014 (-)
rbm24a LOC106588906 coding upstream 85280 58793299 ~ 58808572 (-)
LOC110496613 LOC106588909 coding upstream 116192 58824211 ~ 58852541 (-)
G1567368 NA non-coding downstream 13330 58662613 ~ 58662887 (-)
G1567353 NA non-coding downstream 87235 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 92161 58583826 ~ 58584056 (-)
G1567348 NA non-coding downstream 98465 58577525 ~ 58577752 (-)
G1567334 NA non-coding downstream 120835 58553305 ~ 58555382 (-)
G1567865 NA non-coding upstream 114160 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 163837 58870937 ~ 58873691 (-)
G1567880 NA non-coding upstream 177889 58885908 ~ 58892166 (-)
G1567886 NA non-coding upstream 203470 58911489 ~ 58911850 (-)
G1567080 NA other downstream 265088 58410499 ~ 58411129 (-)
G1566972 NA other downstream 508520 58167384 ~ 58167697 (-)
G1566923 NA other downstream 598071 58074209 ~ 58078146 (-)
G1566899 NA other downstream 648427 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1938870 56728341 ~ 56737381 (-)
G1567875 NA other upstream 161344 58869363 ~ 58870007 (-)
G1567931 NA other upstream 296826 59004845 ~ 59074648 (-)
G1568017 NA other upstream 447009 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 1021160 59712624 ~ 59738593 (-)

Expression


Co-expression Network