LOC110496611 (vps28)


Basic Information

Item Value
gene id LOC110496611
gene name vps28
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58725463 ~ 58737268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572607.2
TGTTTTGCGACGTCTGTGGGTCCTTTGGTTCCGCGAGGGGTGTGTTTACACTGACGTCACTTCAGTTTGCCAAGGGGATAAAGTTGTGAAACGGCAGCAGTCACCATGTTTCACGGAATACCTGTCGCAGGAGGTATGGGAGGAGCTCCTGTCAATAAACCTGAATTGTATGAGGAAGTAAAATTGTACAAgaatgccagagagagagagaaGTTTGACAACATGGCAGAGCTGTTTGCTGTGGTGAAGACCCTTCAGGCCCTGGAGAAAGCTTACATCAAAGACTGTGTGACTCCTAATGAGTACACGGCTGCTTGCTCCAGGCTACTGGTGCAGTACAAGGCTGCTTTCAAACAGGTCCAGGGATCTGACGTGGGTTCTATCGACGACTTCTGTAGGAAGTACAGACTTGACTGTCCGCTAGCTATGGAGAGAATCAAGGAGGATCGACCAATCACCATCAAGGATGACAAGGGCAACCTGAATCGCTGCATTGCTGATATCGTATCGCTCTTTATCACGGTGATGGACAAGCTACGTCTGGAAATCCGGGCGATGGATGAGATCCAACCAGACTTGAGAGAGCTGATGGAGACCATGAACAGAATGAGCAACATGCCCCCAGACAATGAGGCCAAGGACAAAGTCACCCTCTGGTTGACCACTCTCAGCAGCATGTCAGCCTCTGATGAGCTGGATGACTCCCAGGTTCGCCAGATGCTGTTTGACCTGGAGTCAGCCTACAACGCCTTCAATCGCTTCTTACACTCCTCCTAATCTACCCATCATCCAGGACTGTTCTCACCTTTCTTATATCATTGtactatcccttcctctctcgctaCGCGTCTCAGAGATCATCGTCTCTGTTTGTGGTCTGTACTATTCAATGGAATAATATCTGTCTTCCTCCATCTCTGGTACAGTACTTGTCTGTCTTATCCTTTGAACTCTGACCTAGACTCTTGGCTGTGTCCAGTGCTGTGGCCCAGTGGGGTCCTCCTGTTCAGTGAGATGCCTAGTTGAGTTGTAGTTCTCTAGCCTGAGTGACGGGGCACTGTGTTAAGACTACTcatatcaaatttgatttgtcacacgcgccgaatacaccaggtgtagaccttaccgtaaaatgttttacttacaagcccttaaccaacagtgcagttttaagaaaagatttactaaataaactaaagtaaataaataaagaagtaaaacagtaaaataatgagactatatacagggggtaccgacaCCGAGTCAATGTGGTATCAGCCTGTGTTCTAGCATCTACAGGACATAGGACTGTTGTCATACCAACACAAGGCCCGGTGTGAGTCTGTACCCTTTAAAAATCACTTTATATGAAGACAAGATATTTGAAATACAACATGTAATAAAGTGACCTGGGGTGTGTTTAAGAAGTTCGGTCAGCCAAAACTTTGATAAAGGGATGGAAATAACATTTTGAGATGAAAATGAACTGCTAAATTTGTGAAATACAGTGTTGCTGTTCCTCATCTGCACTCTGAGGCACTCCAATAACTTGTGTACAGGTTATTCCTGGCAATGGATGTTCAGTTAACTCAAGTTGAAACAGTTAATGGACAGGTGGGCCTTAAAATAGTTAAAGCCTACCTGTAATGCACCCTTATTGATGATCATGTTGAAACACTCTAGTGAATGAAATGTGTTTATCTATGATTTTGTTTCTCATTTGAGTACATTTGATATTATAGTACTATACTTCAGTTAACATTCTTAATTAATCTTTTCTTTAGATGTGAGGGTTTGGCCACATTAGGTGGGCAATGGAGATGGGTGGATTCATAGAATGTCCTCCTTTTGGGATGCTGACAAAATGGTGTTTCACCCCTCAATGAAAATTAGGGAGAGCATATTTATTAAGAATTACCATTGTAAATAATGCAGTTTTGAATTTAAAAAAAGCATGTAACACTTTTTAGaaataatatttaaaaacatCTACCTCCAA

Function

symbol description
vps28 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 28 homolog isoform X1

GO: NA

KEGG:

id description
K12184 VPS28; ESCRT-I complex subunit VPS28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572607.2 True 1999 mRNA 0.43 10 58725463 58737268

Neighbor

gene id symbol gene type direction distance location
LOC110496607 LOC106588901 coding downstream 1705 58708246 ~ 58723758 (-)
LOC110496608 LOC106588904 coding downstream 17444 58676217 ~ 58708019 (-)
LOC110496605 LOC106588900 coding downstream 63997 58641033 ~ 58661466 (-)
si:ch211-13c6.2 LOC106588899 coding downstream 84651 58629316 ~ 58640812 (-)
LOC110496603 NA coding downstream 115786 58589095 ~ 58609677 (-)
LOC110496609 cap2 coding upstream 3071 58739765 ~ 58789014 (-)
rbm24a LOC106588906 coding upstream 56031 58793299 ~ 58808572 (-)
LOC110496613 LOC106588909 coding upstream 86943 58824211 ~ 58852541 (-)
ptdss1b LOC106588913 coding upstream 117013 58854281 ~ 58863742 (-)
LOC110496616 lrrc14b coding upstream 136427 58873695 ~ 58876891 (-)
G1567380 NA non-coding downstream 30641 58693972 ~ 58694822 (-)
G1567368 NA non-coding downstream 62576 58662613 ~ 58662887 (-)
G1567353 NA non-coding downstream 136481 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 141407 58583826 ~ 58584056 (-)
G1567348 NA non-coding downstream 147711 58577525 ~ 58577752 (-)
G1567865 NA non-coding upstream 84911 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 134588 58870937 ~ 58873691 (-)
G1567880 NA non-coding upstream 148640 58885908 ~ 58892166 (-)
G1567886 NA non-coding upstream 174221 58911489 ~ 58911850 (-)
G1567080 NA other downstream 314334 58410499 ~ 58411129 (-)
G1566972 NA other downstream 557766 58167384 ~ 58167697 (-)
G1566923 NA other downstream 647317 58074209 ~ 58078146 (-)
G1566899 NA other downstream 697673 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 1988116 56728341 ~ 56737381 (-)
G1567875 NA other upstream 132095 58869363 ~ 58870007 (-)
G1567931 NA other upstream 267577 59004845 ~ 59074648 (-)
G1568017 NA other upstream 417760 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 991911 59712624 ~ 59738593 (-)

Expression


Co-expression Network