LOC110496609 (cap2)


Basic Information

Item Value
gene id LOC110496609
gene name cap2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58739765 ~ 58789014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572603.2
CTTCTCAAGACCGGGCAGTGGGGCAGGGAAAGATTGGTGTCACCAACTGGTACTTTGCCATTGGTCCACTTAATCCACTGTTTTCTCAGGTTCACCAATGTTACTTAATTTGGAAGTCCCGGAAACTCAAGAGTTAGCTGCGCGATTGACTGACAGGGAGGCTGGGTACAGCGGAATACCCAGGGACAAATCTTGCCGGGATATTACAAAAGCGAAAGAAAACACTACGCCAGGATCTGATAGGGACTAGTCGAAGGGCCGCCACCATGGAAAAATTAGTTCAGAGGCTGGAGCAGGCCGTGATTCGCTTAGAGCAGGTGTCCGTCAACATGCAGGTGTCCAATGGCATGGCCAACGGGGACTGTAACGGGATCAACGGAGgtCTGTCCCAGTGTATGGATGCCTTTGACCTGCTGCTGTTGGGGCCAGTGTCAGAGTACCTGAAGAATAGCAGAGCCATAGGAAACGATGTGGAGAACCATgcggagatggtgaacaaCGCTCTACAGCTTCAGAGAAGCTTCCTCAAAATGGCCACCACACACCAGGAGCCTGCTCAGaTGGAGCTGTCTGACCTGCTGAAGCCTATCTCAGAGAAAATCCAGGAGATTCAGAACTTTCGGGAATGTAACCGTGGCAGCAGCCAATTCAACCACCTATCAGCTGTCAGCGAGAGCATCCCAGCACTGGGCTGGGTCGCCGTGAGCCAGAAACCAGTTCCCTATGTGAAGGAGATGAATGATGCTGCCATTTTCTACACTAACAGAGTTCTGAAAGACTATAAAGACTTAGACAAGCGTCATGTGGAGTGGGTGGGGTCCTACCTATCCATCTGGACTGAGCTTCAGGCCTTCATCAAACAGCATCACACAACAGGCCTAGTCTGGAGCAAGATTGGTCCCAttgctcctccctctctgttcgcTCCTGCCCCTGGCGGTCCCAGCCCCCTTCCACCAACCCCACCCCCTGGACCCCCACCAGTCTTCACAGGCAAACTGCCACAGGCCGACAGCACCACGGCCCAGCACTCGGCTCTCTTCGCCCAGTTGAACCAAGGAGAAGCAATCACTAAAGCATTAAAGCACGTCTCAAAGGACCAGATGACCCATAAGAATCCCGCCCTTCGCTCCCAGGGAGGTGAGAATCACGCCTCCCCATCCAAGAGCCGGAACCCCGGCGGCTCCTCCAACCTAGCGCTTCCCCAGAAACGACCCCCACtgctggagctggagctggaggGGAAGAAATGGAGGGTGGAGTACTTTGACCAGGCTCATGACCTGGTTATCAAGGAGACAGAGCTGAGACAGGTGGCCTATGTCTTCTGCTGCAGCAACTCTACTCTACATATAGAGGGAAAGATCAACTCCATCATTGTGGATAACTGTAAGAAGCTTGGTCTGGTGTTTGACAACATCGTTGGCATTGTGGAAATAATCAACTCAAAGGACATTCAGTTACAGGTGATGGGTAGAGTTCCTACCATCTCCATCAACAAGACAGAGGGATGCCAAGTCTACCTGAGTAAGGACGCTCTGGACTGTGAGATCGTCAGCGCCAAGAGCTCTGAGATGAACATCCTGGTACCACAGGATGACGactatAGGGAGTTCCCAGTTCCTGAGCAGTTCAAGACCGTTTGGGACGGGTCCAAACTGGTGACAGAACCCACAGAGATCGCTGGCTGATTGCTGATACTTCCTCCTCATCGAGATGATCTCTTATCACCCCCATTTATTCCTCATCTATTTTCCCTCTCCGTCAGAGGTTTCACAAACCTTATAGGCTGGTAATAAAAGGGATCCTGTACCACACAAACCAGACAGTGTAACTGACTGGCTAGTAGTGCTGTAGGTCAGTTGATTGTACGCCTGATTGTATGCATTAAGATTACATTATATTGTTTCCTCTGCACTTTGAAATTGTAGATTGTCCTTGAACTGTTTGTTCAGCTTATTTGTTGCAGAGCACTCTCCTTCACAAAACTACTGTACTATCCACAGAGTTATGGTAAGCTTACTATTTAAACATGCAGTATTTTTGTCAGGTTTCTTCGTGTAGAACTTCTGTGTTTGGCAAATAAAGTTGCATTAAAATGAGGAATAGTGAGGAAGTGTAGCCTTTATGTTAATCTGTTAAATCTGTTTATGCAAAATAAGGTAAAGACTCTCAAACAAGTATCTGGCACTTACTTGTGTGTGCCATAACATAAAAGGTGTTTATGCAAGTAGGCTATGTGTACAACATAATTACTTCTTTACAAGTTAACAGCTGAAAGACCTACCCTGATAAGGCAAACCTTGTATTAGGATATATTATGGATGTGTCTTTTGATTGAAGAGAACCTTCAGATTCCATACTGGCAttgtaatgttgttgttttatGCTTTATGCTTTGTTGTGACTTGATTTGAGAGGCAGAAAGTATTGAAGAATGAGGTCGAGTTGACTTTTGATTTGTATGATATGTAGGATGAAGAGAATGTTCCACGGATAAAATTGAATGGCCAGTTTGAAACTATATGGTCAGTTGAGAGGGAGTTGTAGAGTATGTTCCACAAGATGCTGAAGCATATACTGTTTTGGTTTGCTTTAATACTCTGCGATACTAAACTATTCACATCTAGCTGTTCAGTTAACAGTTGTATCATGTTTATACTGCATGCTAGTGttctcccagctagcacatttggttccttggaagttgtgggagcGTATGTTTTTGATTCCACATTTCTGGGAAGGAAGCCATAAGTTTCCTGACCAGTAgaactgattttttttttgtaacattCTGTGAACGGAAGTAAAAATGTTGCCTGTTCTGGGAACttacatttttaggttgcagtgaggttctgagaacattttactatggttccctgaaagttttcctggaaAGGTTTTATTAATGTTCTGAGAATGGTAATGTaatttgaaggtaattaaataatgttctgagaacatgtttcaataagacttctAATAACACCGCTAGCTTAGTTTAACTGGTTTGAACTCCAAACACAGAACAAATTCAAATGTATTTGCTTCGGCATTAATCatacaattgtatttttttattgtggTATGGCGTCAGTGAAATTCAAAA
>XM_036953360.1
GCTTCTCAAGACCGGGCAGTGGGGCAGGGAAAGATTGGTGTCACCAACTGGTACTTTGCCATTGGTCCACTTAATCCACTGTTTTCTCAGGTTCACCAATGTTACTTAATTTGGAAGTCCCGGAAACTCAAGAGTTAGCTGCGCGATTGACTGACAGGGAGGCTGGGTACAGCGGAATACCCAGGGACAAATCTTGCCGGGATATTACAAAAGCGAAAGAAAACACTACGCCAGGATCTGATAGGGACTAGTCGAAGGAGAAAAGAAGACACCGATAACCACAAAGGGCCGCCACCATGGAAAAATTAGTTCAGAGGCTGGAGCAGGCCGTGATTCGCTTAGAGCAGGTGTCCGTCAACATGCAGGTGTCCAATGGCATGGCCAACGGGGACTGTAACGGGATCAACGGAGgtCTGTCCCAGTGTATGGATGCCTTTGACCTGCTGCTGTTGGGGCCAGTGTCAGAGTACCTGAAGAATAGCAGAGCCATAGGAAACGATGTGGAGAACCATgcggagatggtgaacaaCGCTCTACAGCTTCAGAGAAGCTTCCTCAAAATGGCCACCACACACCAGGAGCCTGCTCAGaTGGAGCTGTCTGACCTGCTGAAGCCTATCTCAGAGAAAATCCAGGAGATTCAGAACTTTCGGGAATGTAACCGTGGCAGCAGCCAATTCAACCACCTATCAGCTGTCAGCGAGAGCATCCCAGCACTGGGCTGGGTCGCCGTGAGCCAGAAACCAGTTCCCTATGTGAAGGAGATGAATGATGCTGCCATTTTCTACACTAACAGAGTTCTGAAAGACTATAAAGACTTAGACAAGCGTCATGTGGAGTGGGTGGGGTCCTACCTATCCATCTGGACTGAGCTTCAGGCCTTCATCAAACAGCATCACACAACAGGCCTAGTCTGGAGCAAGATTGGTCCCAttgctcctccctctctgttcgcTCCTGCCCCTGGCGGTCCCAGCCCCCTTCCACCAACCCCACCCCCTGGACCCCCACCAGTCTTCACAGGCAAACTGCCACAGGCCGACAGCACCACGGCCCAGCACTCGGCTCTCTTCGCCCAGTTGAACCAAGGAGAAGCAATCACTAAAGCATTAAAGCACGTCTCAAAGGACCAGATGACCCATAAGAATCCCGCCCTTCGCTCCCAGGGAGGTGAGAATCACGCCTCCCCATCCAAGAGCCGGAACCCCGGCGGCTCCTCCAACCTAGCGCTTCCCCAGAAACGACCCCCACtgctggagctggagctggaggGGAAGAAATGGAGGGTGGAGTACTTTGACCAGGCTCATGACCTGGTTATCAAGGAGACAGAGCTGAGACAGGTGGCCTATGTCTTCTGCTGCAGCAACTCTACTCTACATATAGAGGGAAAGATCAACTCCATCATTGTGGATAACTGTAAGAAGCTTGGTCTGGTGTTTGACAACATCGTTGGCATTGTGGAAATAATCAACTCAAAGGACATTCAGTTACAGGTGATGGGTAGAGTTCCTACCATCTCCATCAACAAGACAGAGGGATGCCAAGTCTACCTGAGTAAGGACGCTCTGGACTGTGAGATCGTCAGCGCCAAGAGCTCTGAGATGAACATCCTGGTACCACAGGATGACGactatAGGGAGTTCCCAGTTCCTGAGCAGTTCAAGACCGTTTGGGACGGGTCCAAACTGGTGACAGAACCCACAGAGATCGCTGGCTGATTGCTGATACTTCCTCCTCATCGAGATGATCTCTTATCACCCCCATTTATTCCTCATCTATTTTCCCTCTCCGTCAGAGGTTTCACAAACCTTATAGGCTGGTAATAAAAGGGATCCTGTACCACACAAACCAGACAGTGTAACTGACTGGCTAGTAGTGCTGTAGGTCAGTTGATTGTACGCCTGATTGTATGCATTAAGATTACATTATATTGTTTCCTCTGCACTTTGAAATTGTAGATTGTCCTTGAACTGTTTGTTCAGCTTATTTGTTGCAGAGCACTCTCCTTCACAAAACTACTGTACTATCCACAGAGTTATGGTAAGCTTACTATTTAAACATGCAGTATTTTTGTCAGGTTTCTTCGTGTAGAACTTCTGTGTTTGGCAAATAAAGTTGCATTAAAATGAGGAATAGTGAGGAAGTGTAGCCTTTATGTTAATCTGTTAAATCTGTTTATGCAAAATAAGGTAAAGACTCTCAAACAAGTATCTGGCACTTACTTGTGTGTGCCATAACATAAAAGGTGTTTATGCAAGTAGGCTATGTGTACAACATAATTACTTCTTTACAAGTTAACAGCTGAAAGACCTACCCTGATAAGGCAAACCTTGTATTAGGATATATTATGGATGTGTCTTTTGATTGAAGAGAACCTTCAGATTCCATACTGGCAttgtaatgttgttgttttatGCTTTATGCTTTGTTGTGACTTGATTTGAGAGGCAGAAAGTATTGAAGAATGAGGTCGAGTTGACTTTTGATTTGTATGATATGTAGGATGAAGAGAATGTTCCACGGATAAAATTGAATGGCCAGTTTGAAACTATATGGTCAGTTGAGAGGGAGTTGTAGAGTATGTTCCACAAGATGCTGAAGCATATACTGTTTTGGTTTGCTTTAATACTCTGCGATACTAAACTATTCACATCTAGCTGTTCAGTTAACAGTTGTATCATGTTTATACTGCATGCTAGTGttctcccagctagcacatttggttccttggaagttgtgggagcGTATGTTTTTGATTCCACATTTCTGGGAAGGAAGCCATAAGTTTCCTGACCAGTAgaactgattttttttttgtaacattCTGTGAACGGAAGTAAAAATGTTGCCTGTTCTGGGAACttacatttttaggttgcagtgaggttctgagaacattttactatggttccctgaaagttttcctggaaAGGTTTTATTAATGTTCTGAGAATGGTAATGTaatttgaaggtaattaaataatgttctgagaacatgtttcaataagacttctAATAACACCGCTAGCTTAGTTTAACTGGTTTGAACTCCAAACACAGAACAAATTCAAATGTATTTGCTTCGGCATTAATCatacaattgtatttttttattgtggTATGGCGTCAGTGAAATTCAAAA
>TU1793296
GGAGTACTTTGACCAGGCTCATGACCTGGTTATCAAGGAGACAGAGCTGAGACAGGTGGCCTATGTCTTCTGCTGCAGCAACTCTACTCTACATATAGAGGGAAAGATCAACTCCATCATTGTGGATAACTGTAAGAAGCTTGGTCTGGTGTTTGACAACATCGTTGGCATTGTGGAAATAATCAACTCAAAGGACATTCAGTTACAGGTGATGGGTAGAGTTCCTACCATCTCCATCAACAAGACAGAGGGATGCCAAGTCTACCTGAGTAAGGACGCTCTGGACTGTGAGATCGTCAGCGCCAAGAGCTCTGAGATGAACATCCTGGTACCACAGGATGACGactatAGGGAGTTCCCAGTTCCTGAGCAGTTCAAGACCGTTTGGGACGGGTCCAAACTGGTGACAGAACCCACAGAGATCGCTGGCTGATTGCTGATACTTCCTCCTCATCGAGATGATCTCTTATCACCCCCATTTATTCCTCATCTATTTTCCCTCTCCGTCAGAGGTTTCACAAACCTTATAGGCTGGTAATAAAAGGGATCCTGTACCACACAAACCAGACAGTGTAACTGACTGGCTAGTAGTGCTGTAGGTCAGTTGATTGTACGCCTGATTGTATGCATTAAGATTACATTATATTGTTTCCTCTGCACTTTGAAATTGTAGATTGTCCTTGAACTGTTTGTTCAGCTTATTTGTTGCAGAGCACTCTCCTTCACAAAACTACTGTACTATCCACAGAGTTATGGTAAGCTTACTATTTAAACATGCAGTATTTTTGTCAGGTTTCTTCGTGTAGAACTTCTGTGTTTGGCAAATAAAGTTGCATTAAAATGAGGAATAGTGAGGAAGTGTAGCCTTTATGTTAATCTGTTAAATCTGTTTATGCAAAATAAGGTAAAGACTCTCAAACAAGTATCTGGCACTTACTTGTGTGTGCCATAACATAAAAGGTGTTTATGCAAGTAGGCTATGTGTACAACATAATTACTTCTTTACAAGTTAACAGCTGAAAGACCTACCCTGATAAGGCAAACCTTGTATTAGGATATATTATGGATGTGTCTTTTGATTGAAGAGAACCTTCAGATTCCATACTGGCAttgtaatgttgttgttttatGCTTTATGCTTTGTTGTGACTTGATTTGAGAGGCAGAAAGTATTGAAGAATGAGGTCGAGTTGACTTTTGATTTGTATGATATGTAGGATGAAGAGAATGTTCCACGGATAAAATTGAATGGCCAGTTTGAAACTATATGGTCAGTTGAGAGGGAGTTGTAGAGTATGTTCCACAAGATGCTGAAGCATATACTGTTTTGGTTTGCTTTAATACTCTGCGATACTAAACTATTCACATCTAGCTGTTCAGTTAACAGTTGTATCATGTTTATACTGCATGCTAGTGttctcccagctagcacatttggttccttggaagttgtgggagcGTATGTTTTTGATTCCACATTTCTGGGAAGGAAGCCATAAGTTTCCTGACCAGTAgaactgattttttttttgtaacattCTGTGAACGGAAGTAAAAATGTTGCCTGTTCTGGGAACttacatttttaggttgcagtgaggttctgagaacattttactatggttccctgaaagttttcctggaaAGGTTTTATTAATGTTCTGAGAATGGTAATGTaatttgaaggtaattaaataatgttctgagaacatgtttcaataagacttctAATAACACCGCTAGCTTAGTTTAACTGGTTTGAACTCCAAACACAGAACAAATTCAAATGTATTTGCTTCGGCATTAATCatacaattgtatttttttattgtggTATGGCGTCAGTGAAATTCAAAACTATTATCTTCTCTTCTTTATCCATGGAATTATTCCACtacgccaccaggatggagctgaAAGTACTACATTTCCCACCACAGAAACATATAGCTCTCAAAAAATGTGTGAGCTGGGTATCCTGCTCCATTCCtagaaggttgtatgcaaaataaccgtAGGGCAACAACACTCCAAGTGTTTAAAGCCAAGCTTTAACAAACTAATGGTTCTCAGAACTTTGTGCTAGCTGGGGTAGCACTGAATTGGGAGTGGAGTGGGTTTTTAAAAACacgtttaaatatatatatatactagccTATAGTGCATTGACAGCAGACTTAATTGACAAAGTGAAAGATAATAGCAAGATATATCTTAAACTAGTTATCTTATTACTTTTCCTAACCCAAATATATGGTTGTAGCATCACCAATAGATTGCTGTCACCAGCACTGCATAAGCCTTAATATGCTTAGATACAAATCAAGATAGAGAAATGTTTTTCATAATGTTCAATGTCTACTGAACTATTGTCAATATGCATACCTGTTAGTCTGAATACACCAC

Function

symbol description
cap2 Predicted to enable actin binding activity and adenylate cyclase binding activity. Predicted to be involved in cAMP-mediated signaling; cell morphogenesis; and regulation of adenylate cyclase activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; heart; male organism; muscle; and neural tube. Orthologous to human CAP2 (cyclase associated actin cytoskeleton regulatory protein 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572603.2 False 3115 mRNA 0.45 13 58740339 58789013
XM_036953360.1 False 3145 mRNA 0.45 14 58740339 58789014
TU1793296 True 2406 lncRNA 0.38 5 58739765 58742842

Neighbor

gene id symbol gene type direction distance location
LOC110496611 vps28 coding downstream 3071 58725463 ~ 58737268 (-)
LOC110496607 LOC106588901 coding downstream 16581 58708246 ~ 58723758 (-)
LOC110496608 LOC106588904 coding downstream 32320 58676217 ~ 58708019 (-)
LOC110496605 LOC106588900 coding downstream 78873 58641033 ~ 58661466 (-)
si:ch211-13c6.2 LOC106588899 coding downstream 99527 58629316 ~ 58640812 (-)
rbm24a LOC106588906 coding upstream 4285 58793299 ~ 58808572 (-)
LOC110496613 LOC106588909 coding upstream 35197 58824211 ~ 58852541 (-)
ptdss1b LOC106588913 coding upstream 65267 58854281 ~ 58863742 (-)
LOC110496616 lrrc14b coding upstream 84681 58873695 ~ 58876891 (-)
LOC110496617 LOC106588916 coding upstream 88832 58877846 ~ 58906171 (-)
G1567380 NA non-coding downstream 45517 58693972 ~ 58694822 (-)
G1567368 NA non-coding downstream 77452 58662613 ~ 58662887 (-)
G1567353 NA non-coding downstream 151357 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 156283 58583826 ~ 58584056 (-)
G1567348 NA non-coding downstream 162587 58577525 ~ 58577752 (-)
G1567865 NA non-coding upstream 33165 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 82842 58870937 ~ 58873691 (-)
G1567880 NA non-coding upstream 96894 58885908 ~ 58892166 (-)
G1567886 NA non-coding upstream 122475 58911489 ~ 58911850 (-)
G1567889 NA non-coding upstream 138850 58927864 ~ 58932641 (-)
G1567080 NA other downstream 329210 58410499 ~ 58411129 (-)
G1566972 NA other downstream 572642 58167384 ~ 58167697 (-)
G1566923 NA other downstream 662193 58074209 ~ 58078146 (-)
G1566899 NA other downstream 712549 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 2002992 56728341 ~ 56737381 (-)
G1567875 NA other upstream 80349 58869363 ~ 58870007 (-)
G1567931 NA other upstream 215831 59004845 ~ 59074648 (-)
G1568017 NA other upstream 366014 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 940165 59712624 ~ 59738593 (-)

Expression


Co-expression Network