rbm24a (LOC106588906)


Basic Information

Item Value
gene id rbm24a
gene name LOC106588906
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58793299 ~ 58808572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953381.1
GGGTGGAGTTATGGGCAGCGCTTTTAGGAATGGGTCCGAAACATATTTAGTTAGTCAAGACAGTTACGGAGAAGAGTTGAAAACACCTGATGATCTCTTGGACAATCCGCTCCATATCTCATTTAAGTGTTAAAAGATAATCTACCTCGAATCTTGATTTTTGTTGAGTTTTGTGTTATTTCTCTGAAGCCTCTCCAGTTGTAAATCTCATATTGCTAATTTTTATAGAAATACTTAAAAATAACGTAACTAGGTGATAAGGAAACATTGCACTATATTTTTAATTGTTTGTATTCTACTATTTTGCACTAAAATATTGGTGAAGATGCACACCACGCAGAAGGACACGACCTACACGAAGATTTTTGTCGGGGGTCTTCCGTATCACACAACGGATTCCAGTCTCAGGAAATATTTTGAAGTGTTCGGAGAAATTGAAGAAGCTGTCGTGATTACCGATCGACAGACCGGCAAATCCAGGGGGTATGGATTTGTGACGATGGCTGACCGCTCGGCTGCAGACAGGGCCTGTAAAGATCCGAACCCCATCATCGACGGCAGGAAAGCCAACGTCAACCTGGCGTACCTGGGGGCCAAGCCACGGGTGATGCAGCCAGGTTTCACCTTTGGTGTTCCACAAATTCATCCTGCCTTTATCCAAAGGCCTTATGGgATCCCTGCTCACTATGTGTACCCTCAGGCCTTCATGCAGCCAAGCACCATGGTCATCCCTCACGGCATGCAGCCCAGTGCCGCCTCTGCCTCCACCGCCTCCTCCCCGTACATCGACTACACTGGAGCAGCCTACGCTCAGTACTCTGCCGCCGCGGCTAGCGCTGCTGCCGCCGCAGCCTACGAGCAGTATCCCTACGCCGCCTCCCCTGCGGCGGCCGGGTACCTAACCGCAGCCGGATATGGCTATGTTCAGCAGCCCCTGGCTACGGCCGCACCGGGTTCAGCCGTCGCTGCGGCCGCAGCCTTCGGTCAGTACCAGCCTCAGCAGCTGCAAGCAGACCGCATGCAATAGCAGCCACTGCAGCCATTGGACACAATGGGATGGGAGGCCCGCGGCCGGCCTCGGCTGATTGGCTGTGAAGAGGAGAGGacgatgaagaggaagagagaggggccgTGTCGGTAAGAgggtgaagatgatgatgatgatggtgaggtGGGAACTCCATACAGTAGCTTTCCAACTTGCTGTGTTTAAACCAAAAACTTTATAAATTCACAAAACTAAGTAAGGAAGGTGGATTTATCCTTatgattattattgttgttattaatataaaTATTACTATCATTATAATTGTAGTAGAGTATTTATTTCTAGAGGAGAAATGCAACAactaatcacagtggttgtagctTGGTGTAAAACATGACTTTATGTTCCATTGCTGTCATTaacataggagagagagagcgttctCTTTATGGGACACTTAGACGTGTCCCGAAGTGCCCTTGCAACCTATATTTACTATCACATTTCGAGGGCTCTTGTCCTTCTGTCTTTTCAAGTGCATTGAAGTAAATTGTCTGATAATCAGGGAAATGTATCAGTTTCCAGTGTGTTAGTAAAGACAACCTCTGCATGTCAGGGAGTAGTTGAAATAACTGTGGAGAAAAGGAGAAGATTTGTAGCTCGTGTCACACGTTAAGAACTACCTTTTTAACTTCCTGATGCTGAATGTCCCTTTTTTGACTCTGTATCTTGACCTCTTGACCTATGCAAAGCAAACAATTTACCAGGAGACAAAAAAACTGCAGGAATAACCGAAAATGTCGTCAACTCTTCAAAGGGCATCACTAACAATATGAAGGCaactcacagagagagaaagaaaagcatGTTTTCAGACAATGAGAAGCACCAAATCAGTTAGTCTCAAACACATGGCTGcatgcaaacacacgcacacacacacacgcatacacagttGCGTACATAGTGGTAAAGGTCAATGGGACCGGTCGTGCTCTCTGCCTCTGTGCAATGGGATctagtcagagagaaagagagagggagggagagggagagagagagggagcagctgGGGAGGGGGCTGGCACAGTTCGCCCAGCGCCACACAGACGGATCACTCTGGAAATAACGCATCACTTGTCCTCATTTGTTGAGCTGTCACATTTTAATCCCAGGGCCCATTTGGGaactgtctcttctctgtcctgcctgcctggccctgtcagcacttccacctctgtcctctatcctctgtcctctgtcctagAGCCGACCGGCTGGGCTGgtgtcaggtacacacacacttccctcctATGCTAACCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACcccctgaccctgtacccactcCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACcccctgaccctgtacccactcCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCATCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGACCCTGTACCCTGGCCCTGTACCCACTCATCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCTGGCCCTGTACCCACATTTCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCTGGGGTGGTGATGGGGGAtgtagagaaggggggggggggggggctgcaggCGCTTGACATATGAATCTATGGGTTCTTAGTGTGCCTTACATTTGTATTGCTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTActatttaaaatatttattttcagaTTGGACTATGTTCTATGCGCTCTAAGGACAGAGAATTAGTGGTGGTACTGTATTCATTTTATTATGTATTCATCTCAAGGTATATAAGTTATTGGGTAGATTTAGttgtattataattattattaacaTACTCAACCAAAAATGTTAATGTAGGATTTATACAAGATACAATTCTGTATGTGCACTGTACAATTATACTTTTTGCCTTTTGAAATCTTAGAATAAATATTGGTTAGTTGAATGCCTTTTCTATGAAACCTTATTTAAATGCAGGCCTGTTTGCGTGCAGACTGTTACTCTTTTGTGTTTAGAACGGTTGGAAAAGACAAACAAAATCCTGACAAAAATGAGCTAATTGCTGCTTTATACATTAGAATGTATAGTTATTGTCATGGTTCGGATAGTTGTGCTTCTATTGCTTTTAATATACATCAGATGAGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAAgggaaaatatgaaaaataaatgacaaaaaaaaacattttaaggaAGCTTTTTATTGTCACTGGATTAAGGCATGTACAGTGTTATTTACTATATTTAAATGCAAAGGTCCTGTTGGTAGTAAAACTGTATTTCAGAATTTCAACACTATTTACTCTAAATTGAAATAAAAGGTTCTATATTTAAAAACAatactgttgttttttttaagatGGATGTTGAATTGATGTTAAGTTGATGTCAAATTGATGTTAAATTGATGTTGAATTGATGTTGTCTTCAGGTTGGGTGTCTTTTTGTGGGCCTTAGTATGGAGGCCTGAGACAATTGATAGTCTGCAGAGCAAATTAGGTATGAAGCTGCCAAAGCTGTTGATGTCTATTAAACACCTATAAACAGA

Function

NR:

description
RNA-binding protein 24

GO:

id name namespace
GO:0003228 atrial cardiac muscle tissue development biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953381.1 True 4266 mRNA 0.47 4 58793299 58808572

Neighbor

gene id symbol gene type direction distance location
LOC110496609 cap2 coding downstream 4285 58739765 ~ 58789014 (-)
LOC110496611 vps28 coding downstream 56031 58725463 ~ 58737268 (-)
LOC110496607 LOC106588901 coding downstream 69541 58708246 ~ 58723758 (-)
LOC110496608 LOC106588904 coding downstream 85280 58676217 ~ 58708019 (-)
LOC110496605 LOC106588900 coding downstream 131833 58641033 ~ 58661466 (-)
LOC110496613 LOC106588909 coding upstream 15639 58824211 ~ 58852541 (-)
ptdss1b LOC106588913 coding upstream 45709 58854281 ~ 58863742 (-)
LOC110496616 lrrc14b coding upstream 65123 58873695 ~ 58876891 (-)
LOC110496617 LOC106588916 coding upstream 69274 58877846 ~ 58906171 (-)
LOC110496620 LOC106588918 coding upstream 106589 58915161 ~ 58918050 (-)
G1567380 NA non-coding downstream 98477 58693972 ~ 58694822 (-)
G1567368 NA non-coding downstream 130412 58662613 ~ 58662887 (-)
G1567353 NA non-coding downstream 204317 58588360 ~ 58588982 (-)
G1567355 NA non-coding downstream 209243 58583826 ~ 58584056 (-)
G1567865 NA non-coding upstream 13607 58822179 ~ 58822505 (-)
G1567871 LOC106588914 non-coding upstream 63284 58870937 ~ 58873691 (-)
G1567880 NA non-coding upstream 77336 58885908 ~ 58892166 (-)
G1567886 NA non-coding upstream 102917 58911489 ~ 58911850 (-)
G1567889 NA non-coding upstream 119292 58927864 ~ 58932641 (-)
G1567080 NA other downstream 382170 58410499 ~ 58411129 (-)
G1566972 NA other downstream 625602 58167384 ~ 58167697 (-)
G1566923 NA other downstream 715153 58074209 ~ 58078146 (-)
G1566899 NA other downstream 765509 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 2055952 56728341 ~ 56737381 (-)
G1567875 NA other upstream 60791 58869363 ~ 58870007 (-)
G1567931 NA other upstream 196273 59004845 ~ 59074648 (-)
G1568017 NA other upstream 346456 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 920607 59712624 ~ 59738593 (-)

Expression


Co-expression Network