ptdss1b (LOC106588913)



Basic Information


Item Value
gene id ptdss1b
gene name LOC106588913
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58854281 ~ 58863742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021572611.2
TCTCCGCCCATCCCCAGTCCTCATCAATTTATTTACAGGCAGATCAACCTGTCCTGTCGAGAACTGCTGACACAGGGAATTTTGTGGAAGAAACTCCTTATCACTCAACCATGGCGCCTGCTTTGGGATCCCATAAATTAAGCACGGATGATGTGAATGACATGTTACACTTTCGGATGATTAACGAGCAACAAGTGGAGGGCATCAGCATTAACTTTTTCTACAAGCCTCACACTCTCACGCTTTTGACGTTCACTGTGGCTAGCTTGATGTACTTCGTCTTTTCCAGGGATGATGCAGATGTTGACAACAACCTTCGAGTGGGTTTCCTGTTGGTTGTCTCCTTCTTCCTCGTCATCAGTGTCCTGGCCTTCCCCAATGGTCCATTCACAAGACCACATCCTGCAATTTGGCGCATGGTATTTGGTCTGAGTGTTCTGTACTTCCTGTTCCTGGTCTTCCTCATCTTCCTGAACTGGGCCCAGGTGAAGAGGCTCATGTACTGGGTGGACCCCAACCTACGCTACGCTACCCGTGAGACTGATGTCATGGAATATGCAGTGAACTGTCACGTGATCACCTGGGAGCGGATCCTGAGCCACTTTGACATCTTTGCGTTTGGGCATTTCGGGGGCTGGGCCATGAAGGCAATGCTCATCCGCAGCTACGCCCTCTGCTGGACCATCAGCATCACCTGGGAGCTCACTGAGctgTTCTTCATGCACCTGCTGCCTAACTTTGCTGAGTGCTGGTGGGACCAGTTGATCCTGGACATCCTCCTGTGTAATGGAGGGGGCATCTGGTTGGGCATGACTGTGTGTCGCTTCCTGGAGATGCGGACCTACCAATGGGCCAGCATCAAAGACATCCACACGACCACAGGGAAGCTGAAGCGGGTTGTGCTCCAGTTCACCCCAGCAAGCTGGACCTACGTACGATGGTTAGACCCCAAGTCCTCCTTCCAGAGGGTGGCAGGGATCTACGTCTTTATGATTCTCTGGCAGCTGACTGAGTTGAACACGTTCTTCCTGAAGCACATCTTCGTGTTCCAGGCATCTCACGCTCTCAGCTGGTGCCGGATTCTCCTTCTTGGAATCATCACAGCCCCTACTGTACGACAGTATTATGCATATCTGACAGACACACAGTGCAAACGAGTGGGAACACAATGCTGGATGTTTGGGGCCATAGCCTTCCTGGAGGCCCTGGCGTGTGTCAAGTTTGGACAGGACGTGTTCTCTAAAACACAAGCTCGGTCTGTGTTCCAGTGGCTTCTGTGTGTGgcttTCATCACACTTCTCTGTCTGTATGGGATGGTGCGGTATGAGCAGAAGTATGAGCCTGAGTTAAAGAGTGTCTCTGAGAGTGATGATGGCAACCTAATAGAGTCATGTGATTATGACATTACAGGTGAGAGAGACTCTCGGAATAACTCAGCCAGTCCATCTAAACAAGGGAGAGGCTCTGCGAGAACCAAAGCTGTCAATGGACACGAAGATTAAAAGCAATGAGAGCCAATGAAGGGACTACGGTACATCCCTACTGCACCCAACAACTCTGTGGGGAGATGGAAGGAAGAGAATTTGGGTAAGGAGGTTCAAGAGGTGGGGATATTACATTGGTTGAAAGGTGGTTAAAGAACATTGATGAGATAAATGAAGCATAAACTGGAGAAGGCTGAGCAGAGAGCTTTACTACATTTAcattagtaatttagcagacgctcttacccaGAGCAACCCCCCACTTCACTGTGTTTGTGAGATCAACAACCAATCAACAAAAGTTGAATTTACCACTTGATGAGGAGGCACCAACTGTTGAGTTTACAATCTTCACAGAATTGACTGAACACCAAGGTGTACCGAATGCATTTTTACTCTTCACACTCTTCCCCCTCTTGTTCAAATGATGACCATAAATATTACAGGATGGATTTTATTTAACTTACAATGAAAATCTAAATTATGTGAAGCTAAAGCCTGAATGTTTTAGATGCCTGGTTTCCCTTTTCTGTATTCAGAGTTTATTATTGCTAATTATTTTAACTCATTCAGTTCAAGCTATATATATTGAAAGTCAGAGTTCACATTTTTCTATGAGAATTTCAAAgataatttaaatacattttacaactgactagtaTTGAAATGGAATTGGTCTCAACCCTGTTTGGACAGATCTGTTTTTAAGATAATTCCAGGCCTTAAatgtttaaaatgttgattatgTCATGACGACTCACTTTGTTTAAGTGAGTGTGTGAAAGGTAATATGATTAACCATTGTTTTTATACAAGCATTAAGAGTGCATTTGTTTTGTATGAATTATGTGAACTGCACACTGTTACAAGATCATTTATATGAATATAGCTTTCtaataaatatttaaaacaggacaaagaa

Function


NR:

description
phosphatidylserine synthase 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021572611.2 True 2406 mRNA 0.45 13 58854281 58863742

Neighbor


gene id symbol gene type direction distance location
LOC110496613 LOC106588909 coding downstream 1740 58824211 ~ 58852541 (-)
rbm24a LOC106588906 coding downstream 45709 58793299 ~ 58808572 (-)
LOC110496609 cap2 coding downstream 65267 58739765 ~ 58789014 (-)
LOC110496611 vps28 coding downstream 117013 58725463 ~ 58737268 (-)
LOC110496607 LOC106588901 coding downstream 130523 58708246 ~ 58723758 (-)
LOC110496616 lrrc14b coding upstream 9953 58873695 ~ 58876891 (-)
LOC110496617 LOC106588916 coding upstream 14104 58877846 ~ 58906171 (-)
LOC110496620 LOC106588918 coding upstream 51419 58915161 ~ 58918050 (-)
si:ch211-57n23.1 LOC106588919 coding upstream 58286 58922028 ~ 58926488 (-)
ago2 LOC106570475 coding upstream 70526 58934268 ~ 58952492 (-)
G1567865 NA non-coding downstream 31776 58822179 ~ 58822505 (-)
G1567380 NA non-coding downstream 159459 58693972 ~ 58694822 (-)
G1567368 NA non-coding downstream 191394 58662613 ~ 58662887 (-)
G1567353 NA non-coding downstream 265299 58588360 ~ 58588982 (-)
G1567871 LOC106588914 non-coding upstream 8114 58870937 ~ 58873691 (-)
G1567880 NA non-coding upstream 22166 58885908 ~ 58892166 (-)
G1567886 NA non-coding upstream 47747 58911489 ~ 58911850 (-)
G1567889 NA non-coding upstream 64122 58927864 ~ 58932641 (-)
G1567913 NA non-coding upstream 114518 58978260 ~ 58978474 (-)
G1567080 NA other downstream 443152 58410499 ~ 58411129 (-)
G1566972 NA other downstream 686584 58167384 ~ 58167697 (-)
G1566923 NA other downstream 776135 58074209 ~ 58078146 (-)
G1566899 NA other downstream 826491 58027511 ~ 58027790 (-)
LOC110496560 LOC106588840 other downstream 2116934 56728341 ~ 56737381 (-)
G1567875 NA other upstream 5621 58869363 ~ 58870007 (-)
G1567931 NA other upstream 141103 59004845 ~ 59074648 (-)
G1568017 NA other upstream 291286 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 865437 59712624 ~ 59738593 (-)

Expression



Co-expression Network