LOC110496618 (LOC106588914)


Basic Information

Item Value
gene id LOC110496618
gene name LOC106588914
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58864013 ~ 58873692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572615.2
CGTAATACTTCCGTGAGAGCGCACACATCTCCATCGCTTCAACCTGTATCCAGCTGTGTCAGAGATGTACCTCATTACTGTCAAGGACTGTGGGTATCATCACCCTCCAGTATTCCACTGATGCCCAACATTGCCCTGCAGCCTTCTGGAATTATTTCAGTGTTCCAGTATTGCTTTCCATGCTCTAGAGAAGTCAGAACCCACCTCAGACGCAATAGAGGTGTAAACTATGAGTGCGGAGTTACTGTGAATCTCATGCCAAGGTCCAACCATTTCAAACGAAACGCAGGGATACCGATGGGACTGATATGGTGCCATATCAGAATCCTCTCTCCCATCAACTCAGAAATGTAGGGATGTCGCTGAAGGAGTGGCAGACTGCCTTAGCAGCTACCGGCAGACTCCTGGTCGGCTTCCGTAAATGGTACTACAATGCGGCCGGATTCAACAAAATTGGTCTGATGCGTGATGACACGATCCATGAGGATGGCGATGTGAAAGAAGCCCTGCGGAGGCTCCCAGAGAAAGTGTACAATGACAGGATGTTCAGGCTCAAGAGAGCCCTGGACCTGTCCATGAAGCAGGCAGTTCTGCCTAAGGAACAGTGGACTCAATATGAGGAGGATGTACATTACCTGGAGCCTTACCTGGAAGAGGTCATCCGTGAGAGGAAAGAGGTTGAGGAGTGGTCGAAGAAATGAGATGAATCTGGAGGGCTGCTGTTCTTTCTCTTTGGTCTGGTTCATTGTTGTCCTCTGTTGTAATGTTTAAAATCAAGTTTACCCTATGGGAAGACTGCTTattaaaaatgtacatttttgcaAAA
>XM_021572616.2
ATTAATGGTACTTTTCTACTAGTATGTGAGTGACCTTTATTGTGAAATGTTCCGAAATTCCCTAACTCGGAAGTACTTTCCTAGTGTTGCTGACGAGACGCGGATTCGTTTTACCTTAGACAGAACAACATGGGGTCGAGGGCACCAGCAGCTACCGGCAGACTCCTGGTCGGCTTCCGTAAATGGTACTACAATGCGGCCGGATTCAACAAAATTGGTCTGATGCGTGATGACACGATCCATGAGGATGGCGATGTGAAAGAAGCCCTGCGGAGGCTCCCAGAGAAAGTGTACAATGACAGGATGTTCAGGCTCAAGAGAGCCCTGGACCTGTCCATGAAGCAGGCAGTTCTGCCTAAGGAACAGTGGACTCAATATGAGGAGGATGTACATTACCTGGAGCCTTACCTGGAAGAGGTCATCCGTGAGAGGAAAGAGGTTGAGGAGTGGTCGAAGAAATGAGATGAATCTGGAGGGCTGCTGTTCTTTCTCTTTGGTCTGGTTCATTGTTGTCCTCTGTTGTAATGTTTAAAATCAAGTTTACCCTATGGGAAGACTGCTTattaaaaatgtacatttttgcaAAAGA
>TU1793356
CGAAATTCCCTAACTCGGAAGTACTTTCCTAGTGTTGCTGACGAGACGCGGATTCGTTTTACCTTAGACAGAACAACATGGGGTCGAGGGCACCAGCAGCTACCGGCAGACTCCTGGTCGGCTTCCGTAAATGGTACTACAATGCGGCCGGATTCAACAAAATTGGTCTGATGCGTGATGACACGATCCATGAGGATGGCGATGTGAAAGAAGCCCTGCGGAGGCTCCCAGAGAAAGTGTACAATGACAGGATGTTCAGGCTCAAGAGAGCCCTGGACCTGTCCATGAAGCAGGCAGTTCTGCCTAAGGAACAGTGGACTCAATATGAGGAGGATGTACATTACCTGGAGCCTTACCTGGAAGAGGTCATCCGTGAGAGGAAAGAGGTTGAGGAGTGGTCGAAGAAATGAGATGAATCTGGAGGGCTGCTGTTCTTTCTCTTTGGTCTGGTTCATTGTTGTCCTCTGTTGTAATGTTTAAAATCAAGTTTACCCTATGGGAAGACTGCTTattaaaaatgtacatttttgcaAAA

Function

NR:

description
cytochrome b-c1 complex subunit 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572615.2 False 826 mRNA 0.48 5 58864013 58873690
XM_021572616.2 False 589 mRNA 0.46 4 58870847 58873692
TU1793356 True 535 TUCP 0.48 4 58870899 58873690

Neighbor

gene id symbol gene type direction distance location
nanos2 LOC106588910 coding upstream 40084 58823202 ~ 58823929 (+)
LOC110496610 aunip coding upstream 124446 58737349 ~ 58739567 (+)
LOC118941194 NA coding upstream 478049 58379624 ~ 58386065 (+)
LOC118941196 NA coding upstream 479362 58384103 ~ 58384651 (+)
LOC118941195 NA coding upstream 479963 58383315 ~ 58384050 (+)
LOC110496619 catsper4 coding downstream 32813 58906505 ~ 58915399 (+)
chrc1 chrc1 coding downstream 44627 58918319 ~ 58922019 (+)
trnaa-ugc-140 NA coding downstream 71569 58945261 ~ 58945334 (+)
dlx5a dlx5 coding downstream 83445 58957121 ~ 58959671 (+)
sem1 shfm1 coding downstream 151227 59024919 ~ 59035388 (+)
G1567475 NA non-coding upstream 42457 58821236 ~ 58821556 (+)
G1567397 NA non-coding upstream 122168 58739746 ~ 58741845 (+)
G1567394 NA non-coding upstream 131690 58731680 ~ 58732323 (+)
G1567388 NA non-coding upstream 139588 58724215 ~ 58724425 (+)
G1567233 NA non-coding upstream 156053 58684815 ~ 58707960 (+)
G1567516 NA non-coding downstream 3335 58877027 ~ 58877460 (+)
G1567522 NA non-coding downstream 16711 58890403 ~ 58902491 (+)
G1567505 LOC106588919 non-coding downstream 50609 58924301 ~ 58925552 (+)
G1567503 NA non-coding downstream 55881 58929573 ~ 58930215 (+)
G1567543 NA non-coding downstream 87550 58961242 ~ 58976415 (+)
G1566445 LOC106588893 other upstream 487007 58364256 ~ 58377006 (+)
G1566224 tbc1d5 other upstream 917250 57941097 ~ 57946763 (+)
LOC110496592 LOC106588883 other upstream 943367 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 other upstream 1000967 57851179 ~ 57870361 (+)
LOC110496571 hoxa7aa other upstream 1752050 57109128 ~ 57112335 (+)
G1567716 asb4 other downstream 436292 59309984 ~ 59312723 (+)
G1567804 col1a2 other downstream 627481 59501173 ~ 59585317 (+)
LOC110496636 bet1 other downstream 771021 59644659 ~ 59647881 (+)
G1567515 NA non-coding upstream 889 58869481 ~ 58870010 (+)

Expression


Co-expression Network