LOC110496620 (LOC106588918)


Basic Information

Item Value
gene id LOC110496620
gene name LOC106588918
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58915161 ~ 58918050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572618.2
AATAACGTTACACTTTTAACTGCTCCAACACGTCACTAACTATCTGAAAGAAGGAAAATACATTTTACGGACAGGTTATCTGTGTTGTTCCTTTAAACATAGCTTTCGATTATTGCTGGTTTTATTTGCATTCTGTATCTGTTTGTCTGCGCGAGCGGACGAGTGGCTCTTTTTTTGTTGCTGATGTTGTTAGCCAGAAAGCAGTTagctaaatagctagctagctagcttctgcATTCATCATTTCACTGGCCAACACGTTCAAGATGCCTCTGGGTTTGAAACCATGTTGCGCTGTCTGCAAAACAAACTCATCGTctatgtggaaaaagggaaaccAAGGAGAGATCCTGTGCAATAACTGCACGGGGAAGAGCACCAGCAGTGGAGCATCTGGACCCTCGGTGTCCTCCAACACACTACAGAATAATGGCGGGGGCAAGCAGTCTAAACAAGAGATCCACAGGAGATCAGCACGGTTGAGGAGCACAAAGTACAAAGCTCCTGCCTCTGAAAAAAAGGTGTCTACCAAAGGAAAAGGCAGAAGACACATATTCAAACTAAAAAATccaatcaaAGCACCAGAATCTGTTTCCACAATCATCACATCAGAATCAGTCTTTTATAAGGGTGTGTATTATCAGATGGGAGACGTCATCAAAGTGACAGACGAGGATGATGGGAGGCCGTACTATGCACAGATCAGAGGTTTCATCCAGGACCAGTACTGTGAGAGGAGTGCCGCGTTGACTTGGTTGATACCAACCCAGGCCAGTCCTCAGGACCTGTTTGATCCAGCCACTTACATTGTTGGTCCAGAGGAGGATCTACCCAGGAAGATGGAGTACTTGGAGTTTGTGTGCCACGCCCCCTCAGAGTACTTCAAGTCCAGGAGCTGCCCCTATCCCACCATTCCTATCCGTCCAGAGAAAGGCTACATCTGGACTCATATTGGACCCACGCCGGCCATCGCTATCAAAGAATAATTTGGCAACAGCAATTAGCCGCTGGGTCAATTAACATGAAGATATTAACTTTGTCTGTTAGTCTGCTAGTACAAGGCACTTGACCcaaattgctccagggtcgccgttgataatggcagaccccgGCCATGACCTACTCGTGAGAGTGGTTCAGGGTGAGTTGGGACATgctaaaaaaacacatttccaattcacacgtgtattaatacacacttgtacatgtatgAAATGGGACAAATATAAACACCCacataataattattattattataatagtcTGAATATTGAAAGTGTTTGTAATTCAACGTTTACAAACCCTTCTAAGTCAAACCCTTCCAACAGTACAGGGACGGACCCATGAAATGATCATCCTGAGGTGACAGTCAGACATGGGATTTACTTTTTTTATTCGGTAATAAATGTGGAAAATACCTTTTTCATAAGCTTTGTACTGGAATGTTTTTCAAACAACATATCATTTTTATTTAGACATCTGTGCAATACATGTTACGTGTTATACctaaaaataaaacaaagtatTTATAAAGATGCTTTTAATAGACTCCCAAGTTCTATCCCTTTTGGTATATATTTTAGACACTTTGTGAAACCTTTATGATCATTTACCTCAGTCAccagtcttttttttttatcaagaaaCTAACTCTTCCTTGATGTCACATTACATGGTTAATATTGAGCTGCATGTGGAAATGTGTGCAGCAAGCCTGAGTCTGATTTAGCCATGTAAATCTATCATTATCTTTGAGACCATTTCAGCTAATCAGTAAAGCCAAATGATTTGGGACATGAAGAAATTCCTATTAAAAGTATGTTCAgcctg

Function

NR:

description
GATA zinc finger domain-containing protein 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23407 GATAD1; GATA zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572618.2 True 1830 mRNA 0.41 5 58915161 58918050

Neighbor

gene id symbol gene type direction distance location
LOC110496617 LOC106588916 coding downstream 8990 58877846 ~ 58906171 (-)
LOC110496616 lrrc14b coding downstream 38270 58873695 ~ 58876891 (-)
ptdss1b LOC106588913 coding downstream 51419 58854281 ~ 58863742 (-)
LOC110496613 LOC106588909 coding downstream 62620 58824211 ~ 58852541 (-)
rbm24a LOC106588906 coding downstream 106589 58793299 ~ 58808572 (-)
si:ch211-57n23.1 LOC106588919 coding upstream 3978 58922028 ~ 58926488 (-)
ago2 LOC106570475 coding upstream 16218 58934268 ~ 58952492 (-)
dlx6a dlx6 coding upstream 44894 58962944 ~ 58966131 (-)
LOC110496627 LOC106588646 coding upstream 142293 59060343 ~ 59060911 (-)
LOC118940999 NA coding upstream 245524 59163574 ~ 59281264 (-)
G1567886 NA non-coding downstream 3311 58911489 ~ 58911850 (-)
G1567880 NA non-coding downstream 22995 58885908 ~ 58892166 (-)
G1567871 LOC106588914 non-coding downstream 42806 58870937 ~ 58873691 (-)
G1567865 NA non-coding downstream 92656 58822179 ~ 58822505 (-)
LOC110496609 cap2 non-coding downstream 172319 58739765 ~ 58789014 (-)
G1567889 NA non-coding upstream 9814 58927864 ~ 58932641 (-)
G1567913 NA non-coding upstream 60210 58978260 ~ 58978474 (-)
G1567944 shfm1 non-coding upstream 106972 59025022 ~ 59035338 (-)
G1567979 NA non-coding upstream 171959 59090009 ~ 59090699 (-)
G1568021 NA non-coding upstream 249897 59167947 ~ 59168189 (-)
G1567875 NA other downstream 45154 58869363 ~ 58870007 (-)
G1567080 NA other downstream 504032 58410499 ~ 58411129 (-)
G1566972 NA other downstream 747464 58167384 ~ 58167697 (-)
G1566923 NA other downstream 837015 58074209 ~ 58078146 (-)
G1567931 NA other upstream 86795 59004845 ~ 59074648 (-)
G1568017 NA other upstream 236978 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 811129 59712624 ~ 59738593 (-)
G1569198 NA other upstream 1323881 60241931 ~ 60251369 (-)
G1569258 NA other upstream 1430726 60348776 ~ 60350759 (-)

Expression


Co-expression Network